Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001820

Physical Location & Seq

Genomic Coordinates Forward (+)

23810946 .. 23811407

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0174800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGTAACTCCTACAACAAAGTGCATGAGAATTTCATTTCTATGGGTCCAATATATGGTAGAGGAGATGAGAATTTGATCTCAGTGGCTCCGACCTGTGATAAGCATGCTGATAACACTATATCAATGGGTCTGACCTATGACAAGGCTGATTTGAATATTTTACCAATGGGTCCTCCTTATGATAAATCAGATAGAGTTCTACCTATGAGTCACAATTACAATAAGAATGAGAGCAATACCATATCTTTTGGTGGTTTCCATGATGAATCTGAGACAAACCCTTCTAGCGGGATCATCAGTAGCTGTGGTTTGTTGACCTGGAATCAGAACACAACAGCTCATGCATCGGAAGAATCTGGTGTGAGAGATTCTGATCATCCTGTTGAGTCGATGATGGATGCGCGTGTAGATGATGCCGTGAAAGTTGATTCCAAAACTGTTAATATTCCCAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046967 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2

Protein Analysis

153

Amino Acids

16.71

Weight (kDa)

4.83

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21990
fragaria_vesca	FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800
malus_domestica	MD03G1160600.v1.1
prunus_persica	Prupe.6G148800_v2.0.a1 Prupe.6G148800_v2.0.a1
pyrus_communis	pycom03g11290
rosa_chinensis	RchiOBHm_Chr1g0344561 RchiOBHm_Chr1g0344771 RchiOBHm_Chr1g0344781 RchiOBHm_Chr1g0344791 RchiOBHm_Chr5g0049211
rosa_laevigata	RLG00000028875 RLG00000028876 RLG00000028883 RLG00000028888 RLG00000034600
rosa_multiflora	Rmu_sc0000141.1_g000005 Rmu_sc0001074.1_g000028 Rmu_sc0004949.1_g000001 Rmu_sc0007444.1_g000001 Rmu_sc0013714.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032520 Rroxscaffold_4G00309640
rosa_rugosa	Rorug01G0174800 Rorug05G0245800 Rorug05G0245900
rosa_samantha	Rh1AG191700 Rh1BG157800 Rh1BG157900 Rh1BG158800 Rh1CG176700 Rh1DG189200 Rh1DG189300 Rh1DG189700 Rh5AG323600 Rh5BG334100 Rh5CG359100 Rh5DG346200
rosa_wichuraiana	Rw1G015740 Rw5G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	56
AccII	CGCG	1 cut(s)	406
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	2 cut(s)	31, 73
AfiI	CCNNNNNNNGG	2 cut(s)	56, 290
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	306, 341
AluI	AGCT	2 cut(s)	306, 341
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	302
AlwNI	CAGNNNCTG	1 cut(s)	306
ApoI	RAATTY	2 cut(s)	31, 73
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	2 cut(s)	47, 173
AvaII	GGWCC	2 cut(s)	47, 173
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	322
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	322
Bme18I	GGWCC	2 cut(s)	47, 173
BmgT120I	GGNCC	2 cut(s)	47, 173
BmiI	GGNNCC	3 cut(s)	48, 90, 174
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	3 cut(s)	356, 391, 406
BsaBI	GATNNNNATC	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 290
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	379, 406
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	2 cut(s)	56, 290
BseMII	CTCAG	2 cut(s)	96, 264
BseRI	GAGGAG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	406
BslI	CCNNNNNNNGG	2 cut(s)	56, 290
BsmAI	GTCTC	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	78, 294, 376
BspACI	CCGC	1 cut(s)	291
BspCNI	CTCAG	2 cut(s)	95, 265
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	48, 90, 174
BspPI	GGATC	1 cut(s)	302
BssMI	GATC	3 cut(s)	78, 294, 376
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	82, 273
BstF5I	GGATG	2 cut(s)	379, 406
BstFNI	CGCG	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	3 cut(s)	81, 297, 379
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	3 cut(s)	78, 294, 376
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	320
BstUI	CGCG	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	379, 406
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	108
CaiI	CAGNNNCTG	1 cut(s)	306
CfoI	GCGC	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	47, 173
CviAII	CATG	4 cut(s)	26, 107, 263, 344
CviJI	RGCY	4 cut(s)	89, 149, 306, 341
CviKI_1	RGCY	4 cut(s)	89, 149, 306, 341
DdeI	CTNAG	2 cut(s)	82, 273
DpnI	GATC	3 cut(s)	80, 296, 378
DpnII	GATC	3 cut(s)	78, 294, 376
Eco47I	GGWCC	2 cut(s)	47, 173
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	320
EcoT22I	ATGCAT	1 cut(s)	349
FaeI	CATG	4 cut(s)	29, 110, 266, 347
FatI	CATG	4 cut(s)	25, 106, 262, 343
FauI	CCCGC	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	376
FokI	GGATG	2 cut(s)	366, 413
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	405
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	4 cut(s)	29, 110, 266, 347
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	7 cut(s)	211, 269, 325, 356, 371, 389, 431
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	7 cut(s)	93, 135, 193, 274, 330, 352, 376
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4V	TGCA	2 cut(s)	25, 347
HpyF3I	CTNAG	2 cut(s)	82, 273
Hsp92II	CATG	4 cut(s)	29, 110, 266, 347
HspAI	GCGC	1 cut(s)	404
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	78, 294, 376
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	5 cut(s)	109, 307, 334, 345, 396
LweI	GCATC	3 cut(s)	356, 391, 406
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	5, 212
MalI	GATC	3 cut(s)	80, 296, 378
MboI	GATC	3 cut(s)	78, 294, 376
MboII	GAAGA	1 cut(s)	365
MluCI	AATT	3 cut(s)	31, 73, 217
MlyI	GAGTC	2 cut(s)	220, 398
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	2 cut(s)	56, 186
Mph1103I	ATGCAT	1 cut(s)	349
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	406
NdeII	GATC	3 cut(s)	78, 294, 376
NlaIII	CATG	4 cut(s)	29, 110, 266, 347
NlaIV	GGNNCC	3 cut(s)	48, 90, 174
NmuCI	GTSAC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	110
PfeI	GAWTC	5 cut(s)	269, 325, 356, 371, 431
PflMI	CCANNNNNTGG	1 cut(s)	56
PleI	GAGTC	2 cut(s)	219, 397
PpsI	GAGTC	2 cut(s)	219, 397
PpuMI	RGGWCCY	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	48, 90, 174
PspPI	GGNCC	2 cut(s)	47, 173
PspPPI	RGGWCCY	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	306
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	444
Sau3AI	GATC	3 cut(s)	78, 294, 376
Sau96I	GGNCC	2 cut(s)	47, 173
SchI	GAGTC	2 cut(s)	220, 398
ScrFI	CCNGG	1 cut(s)	322
SetI	ASST	6 cut(s)	98, 140, 208, 308, 323, 343
SfaNI	GCATC	3 cut(s)	356, 391, 406
SinI	GGWCC	2 cut(s)	47, 173
SmiMI	CAYNNNNRTG	1 cut(s)	41
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	3 cut(s)	31, 73, 217
SsiI	CCGC	1 cut(s)	291
SspI	AATATT	2 cut(s)	160, 448
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	442
TaqI	TCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	31, 73, 217
TfiI	GAWTC	5 cut(s)	269, 325, 356, 371, 431
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	25, 282
TspRI	CASTG	1 cut(s)	90
Van91I	CCANNNNNTGG	1 cut(s)	56
VpaK11BI	GGWCC	2 cut(s)	47, 173
XapI	RAATTY	2 cut(s)	31, 73
XceI	RCATGY	1 cut(s)	110
XspI	CTAG	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.