RLG00000034600

Outer envelope protein 61

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
45801114 .. 45807383
6270 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034600

Sequence Viewer

Length: 1902 bp
ATGTTCAACGGGATGAATATGATGGATCCAGAATTGATGAAACTCGCTCAGGAGCAGATGAGTCGGATGTCGCCGGCCGATTTCGCCAGGATACAACAACAGATGATGGCTAATCCAGAATTGATGAAGATGGCATCAGAGAGCATGAAGAACATGAGGCCTGAAGATTTGAAAATGGCTGCAGAGCAATTGAAACACACACGCCCGGAAGAGATTGCTGAGATTGGGGATAAGATGGCTAGTGCGTCGCCTGAAGAGATAGCAGCTATGCATACACGTGTTGATGCCCAAGTCAGTTACAAATTGAATGCCGCTCAGATGCTCAAGAATCAGGGAAATGCACTTCACAGCCAGGGAAAGTTCAACGATGCCTTGCAGAAATACGTACTTGCAAAGACAAACTTGAATGGCCTTCCATCCTCTAAAGGAAGATCGCTTCTGATGGCATGCTCACTCAACTTAATGTCATGTTACTTGAAAACAAGGCAGTATGATGAATGTATAAAAGAAGGTTCTGAGGTACTGGCATATGATGCACAGAATGTGAAAGCTCTCTATCGGAGAGGTCAAGCATATAAAGAATTGGGCCAATTGGAAGATGCTGTCTCTGACCTGAGCACCGCACATGAAGTTTCCCCTGATGATGAAACTATTGCAGATGTTCTAAGGGATGCTAAGGAAAAATTGGGTACGGAGGGCACTGTGTCTGCCCCAAGAAGACTGGTAATTGAAGAAATAACTGAAGAAGTCGAGACTGTCTCTGCTGCCAACCATAAAAGCTCATCTACAGAGTATTCTATGGCAAAACCACAGGAAACGAGAAACATTCCCAAGACTCAAATTGCAACCGACTCTGAGGTTCTGTCAAACAACTCAGAACGTTTGCAGGCTTTAAAAAATGACCCAGCAACTCTCAGATCATTCCAGAATTTTATCTCAAATGCTGATCCGGATACTCTTGCTGCTTTAAGTTCTGGAAAATCCGAGGAGGTTCCTGCTGACATGGTTAAGACTGCCTCAAGCATGATTGGCAAAATGTCACCGGAAGAACTGAAAAGAATGATTGAATTGGCATCCTCATTTGAGGGAGATAATCCATTGCTCAAGAAAGGTTCACCAAATCTGTCGCCAGATATGTTTAAAACTGCATCTGATATGATGAATAAAATGTCACCGGAGGAACTTCAGAAAATGTTTGAAATGGCTTCAAAAGGGAAGGGCTTATCTTCAACACCAGCATCTAACTTGGACAATTTTAAACCAGGATCAGTTCCACCAAATTTGTCTCCGGATATGCTTAAAACTGCATCTGACATGATGAGCAAAATGCCCCCCGAAGAGCTTCAGAAAATGTTTGAAATGGCATCTTCTATGACAGGGAGAGACTCGTCTCCAACACCAGCATCATTCAATGCTAACAGGCAAAGTTCATCAAGGTATTCAGAAAGCCGTGAAAACTCTGCTGTGAATGTGGCTCATGATGAAGGTGAAAGTAGCTCTCATGGAATATTGCCAAATGTGAGAAGTACTCCTCAGTCAAGCTTCCCTGCCTCTGCTGTTGATTTTCAAGAACAAATGAGAAACCAAATGAAAGATCCTGCAATGCGGCAGATGATGTCATCAATGATGAAGAATATGAGTCCAGACATGATGGCAAACATGAGTGAGCAATTTGGTTTGAATCTTTCTCGGGAAGACGCGGAAAAAGCTCATCAAGCAATGTCTTCTTTGTCACCCGAGTCCTTGGACAAAATGATGCAATGGATGGATAGGATTCAAAGAGGAGTGGAAGGTGCAAGGAAGACAAAGAATTGGCTTCTAGGGAAATCCGGTCTGGTGTTGGCAATAGTAATGCTCATTCTAGCAGTAATCCTTCATCGCTTGGGCTACATTGGTGGTTAG

Protein Analysis

634

Amino Acids

69.89

Weight (kDa)

5.5

Isoelectric Point (pI)

66.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 182 - 215 4.1e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 314
AccII CGCG 1 cut(s) 1700
AccIII TCCGGA 2 cut(s) 949, 1288
AciI CCGC 4 cut(s) 312, 621, 1606, 1700
AclI AACGTT 1 cut(s) 880
AclWI GGATC 5 cut(s) 20, 33, 941, 1273, 1589
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 2 cut(s) 928, 1279
AcuI CTGAAG 5 cut(s) 183, 273, 762, 1169, 1328
AcvI CACGTG 1 cut(s) 278
AfaI GTAC 4 cut(s) 387, 522, 691, 1528
AflIII ACRYGT 2 cut(s) 275, 277
AjnI CCWGG 3 cut(s) 86, 351, 1261
AluBI AGCT 7 cut(s) 266, 551, 780, 1342, 1497, 1542, 1709
AluI AGCT 7 cut(s) 266, 551, 780, 1342, 1497, 1542, 1709
Alw21I GWGCWC 1 cut(s) 620
Alw26I GTCTC 6 cut(s) 610, 746, 763, 1290, 1377, 1395
AlwI GGATC 5 cut(s) 20, 33, 941, 1273, 1589
Ama87I CYCGRG 2 cut(s) 1689, 1736
Aor13HI TCCGGA 2 cut(s) 949, 1288
AoxI GGCC 4 cut(s) 75, 158, 409, 586
ApeKI GCWGC 4 cut(s) 179, 263, 764, 962
ApoI RAATTY 2 cut(s) 928, 1279
Asp700I GAANNNNTTC 1 cut(s) 1341
AspS9I GGNCC 1 cut(s) 586
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 5 cut(s) 1032, 1107, 1164, 1499, 1725
AvaI CYCGRG 2 cut(s) 1689, 1736
BaeGI GKGCMC 1 cut(s) 701
BamHI GGATCC 1 cut(s) 25
BbrPI CACGTG 1 cut(s) 278
BbsI GAAGAC 4 cut(s) 724, 1701, 1716, 1808
Bbv12I GWGCWC 1 cut(s) 620
BbvI GCAGC 4 cut(s) 166, 275, 751, 949
BccI CCATC 8 cut(s) 16, 100, 124, 229, 424, 436, 1645, 1759
BceAI ACGGC 1 cut(s) 1434
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 3 cut(s) 88, 353, 1263
BciVI GTATCC 2 cut(s) 84, 946
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 6 cut(s) 610, 746, 763, 1290, 1377, 1395
BfaI CTAG 3 cut(s) 240, 1820, 1862
BfmI CTRYAG 2 cut(s) 180, 786
BfuI GTATCC 2 cut(s) 84, 946
BisI GCNGC 6 cut(s) 180, 264, 312, 765, 963, 1607
BlsI GCNGC 6 cut(s) 181, 265, 313, 766, 964, 1608
BmcAI AGTACT 1 cut(s) 1528
Bme1390I CCNGG 4 cut(s) 88, 206, 353, 1263
BmeT110I CYCGRG 2 cut(s) 1689, 1736
BmgT120I GGNCC 1 cut(s) 586
BmiI GGNNCC 2 cut(s) 27, 993
BmrFI CCNGG 4 cut(s) 88, 206, 353, 1263
BpiI GAAGAC 4 cut(s) 724, 1701, 1716, 1808
BplI GAGNNNNNCTC 4 cut(s) 743, 775, 1513, 1545
Bpu10I CCTNAGC 3 cut(s) 48, 614, 675
BpuEI CTTGAG 3 cut(s) 308, 1003, 1088
BpuMI CCSGG 1 cut(s) 206
BsaAI YACGTR 2 cut(s) 278, 385
BsaJI CCNNGG 3 cut(s) 352, 984, 1743
BsaWI WCCGGW 5 cut(s) 949, 1042, 1174, 1288, 1829
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 528, 726
Bse3DI GCAATG 4 cut(s) 1097, 1608, 1725, 1766
BseAI TCCGGA 2 cut(s) 949, 1288
BseBI CCWGG 3 cut(s) 88, 353, 1263
BseDI CCNNGG 3 cut(s) 352, 984, 1743
BseGI GGATG 6 cut(s) 18, 72, 416, 676, 1073, 1770
BseMI GCAATG 4 cut(s) 1097, 1608, 1725, 1766
BseMII CTCAG 9 cut(s) 62, 210, 329, 507, 605, 846, 888, 928, 1547
BseNI ACTGG 2 cut(s) 528, 726
BseRI GAGGAG 3 cut(s) 1001, 1521, 1797
BseSI GKGCMC 1 cut(s) 701
BseX3I CGGCCG 1 cut(s) 75
BseXI GCAGC 4 cut(s) 166, 275, 751, 949
BseYI CCCAGC 1 cut(s) 904
Bsh1236I CGCG 1 cut(s) 1700
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 4 cut(s) 77, 160, 411, 588
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 620
BsiHKCI CYCGRG 2 cut(s) 1689, 1736
BsiSI CCGG 7 cut(s) 74, 206, 950, 1043, 1175, 1289, 1830
BsmAI GTCTC 6 cut(s) 610, 746, 763, 1290, 1377, 1395
BsmBI CGTCTC 1 cut(s) 1395
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 4 cut(s) 77, 160, 411, 588
BsoBI CYCGRG 2 cut(s) 1689, 1736
Bsp1286I GDGCHC 2 cut(s) 620, 701
Bsp13I TCCGGA 2 cut(s) 949, 1288
Bsp143I GATC 6 cut(s) 25, 431, 917, 946, 1265, 1594
BspACI CCGC 4 cut(s) 312, 621, 1606, 1700
BspANI GGCC 4 cut(s) 77, 160, 411, 588
BspCNI CTCAG 9 cut(s) 61, 211, 328, 508, 606, 847, 887, 927, 1546
BspEI TCCGGA 2 cut(s) 949, 1288
BspFNI CGCG 1 cut(s) 1700
BspHI TCATGA 1 cut(s) 1477
BspLI GGNNCC 2 cut(s) 27, 993
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 5 cut(s) 20, 33, 941, 1273, 1589
BspQI GCTCTTC 1 cut(s) 1332
BsrBI CCGCTC 1 cut(s) 314
BsrDI GCAATG 4 cut(s) 1097, 1608, 1725, 1766
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 2 cut(s) 528, 726
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 3 cut(s) 352, 984, 1743
BssMI GATC 6 cut(s) 25, 431, 917, 946, 1265, 1594
BssT1I CCWWGG 1 cut(s) 1743
Bst2UI CCWGG 3 cut(s) 88, 353, 1263
Bst4CI ACNGT 2 cut(s) 703, 757
Bst6I CTCTTC 3 cut(s) 204, 249, 1332
BstAPI GCANNNNNTGC 1 cut(s) 533
BstBAI YACGTR 2 cut(s) 278, 385
BstC8I GCNNGC 3 cut(s) 75, 448, 888
BstF5I GGATG 6 cut(s) 18, 72, 416, 676, 1073, 1770
BstFNI CGCG 1 cut(s) 1700
BstKTI GATC 6 cut(s) 28, 434, 920, 949, 1268, 1597
BstMAI GTCTC 6 cut(s) 610, 746, 763, 1290, 1377, 1395
BstMBI GATC 6 cut(s) 25, 431, 917, 946, 1265, 1594
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 5 cut(s) 83, 533, 1029, 1706, 1715
BstNI CCWGG 3 cut(s) 88, 353, 1263
BstNSI RCATGY 1 cut(s) 450
BstSCI CCNGG 4 cut(s) 86, 204, 351, 1261
BstSFI CTRYAG 2 cut(s) 180, 786
BstSLI GKGCMC 1 cut(s) 701
BstSNI TACGTA 1 cut(s) 385
BstUI CGCG 1 cut(s) 1700
BstV1I GCAGC 4 cut(s) 166, 275, 751, 949
BstV2I GAAGAC 4 cut(s) 724, 1701, 1716, 1808
BstX2I RGATCY 2 cut(s) 25, 1594
BstYI RGATCY 2 cut(s) 25, 1594
BstZI CGGCCG 1 cut(s) 75
BsuI GTATCC 2 cut(s) 84, 946
BsuRI GGCC 4 cut(s) 77, 160, 411, 588
BtgZI GCGATG 1 cut(s) 1862
BtsCI GGATG 6 cut(s) 18, 72, 416, 676, 1073, 1770
BtsIMutI CAGTG 1 cut(s) 699
Cac8I GCNNGC 3 cut(s) 75, 448, 888
CciI TCATGA 1 cut(s) 1477
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 586
CseI GACGC 2 cut(s) 234, 1706
Csp6I GTAC 4 cut(s) 386, 521, 690, 1527
CspCI CAANNNNNGTGG 2 cut(s) 1263, 1298
CviQI GTAC 4 cut(s) 386, 521, 690, 1527
DpnI GATC 6 cut(s) 27, 433, 919, 948, 1267, 1596
DpnII GATC 6 cut(s) 25, 431, 917, 946, 1265, 1594
DraI TTTAAA 3 cut(s) 894, 1141, 1258
EaeI YGGCCR 1 cut(s) 75
EagI CGGCCG 1 cut(s) 75
Eam1104I CTCTTC 3 cut(s) 204, 249, 1332
EarI CTCTTC 3 cut(s) 204, 249, 1332
EclXI CGGCCG 1 cut(s) 75
Eco105I TACGTA 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 1743
Eco147I AGGCCT 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 75
Eco57I CTGAAG 5 cut(s) 183, 273, 762, 1169, 1328
Eco72I CACGTG 1 cut(s) 278
Eco88I CYCGRG 2 cut(s) 1689, 1736
EcoRII CCWGG 3 cut(s) 86, 351, 1261
EcoT14I CCWWGG 1 cut(s) 1743
EcoT22I ATGCAT 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 1743
Esp3I CGTCTC 1 cut(s) 1395
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FauNDI CATATG 1 cut(s) 529
Fnu4HI GCNGC 6 cut(s) 180, 264, 312, 765, 963, 1607
FokI GGATG 6 cut(s) 25, 79, 403, 683, 1060, 1777
Fsp4HI GCNGC 6 cut(s) 180, 264, 312, 765, 963, 1607
FspBI CTAG 3 cut(s) 240, 1820, 1862
GluI GCNGC 6 cut(s) 180, 264, 312, 765, 963, 1607
GsaI CCCAGC 1 cut(s) 908
HaeIII GGCC 4 cut(s) 77, 160, 411, 588
HapII CCGG 7 cut(s) 74, 206, 950, 1043, 1175, 1289, 1830
HgaI GACGC 2 cut(s) 234, 1706
HindIII AAGCTT 1 cut(s) 1540
HinfI GANTC 9 cut(s) 61, 328, 835, 851, 1385, 1639, 1681, 1739, 1774
HpaII CCGG 7 cut(s) 74, 206, 950, 1043, 1175, 1289, 1830
HphI GGTGA 5 cut(s) 1032, 1107, 1164, 1499, 1725
Hpy166II GTNNAC 1 cut(s) 1115
Hpy8I GTNNAC 1 cut(s) 1115
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 6 cut(s) 422, 503, 1210, 1478, 1784, 1883
HpyCH4III ACNGT 2 cut(s) 703, 757
HpyCH4IV ACGT 3 cut(s) 277, 384, 880
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 533, 1029, 1706, 1715
HpySE526I ACGT 3 cut(s) 277, 384, 880
Kpn2I TCCGGA 2 cut(s) 949, 1288
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Kzo9I GATC 6 cut(s) 25, 431, 917, 946, 1265, 1594
LguI GCTCTTC 1 cut(s) 1332
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 4 cut(s) 166, 275, 751, 949
MaeI CTAG 3 cut(s) 240, 1820, 1862
MaeII ACGT 3 cut(s) 277, 384, 880
MaeIII GTNAC 5 cut(s) 296, 470, 1038, 1170, 1731
MalI GATC 6 cut(s) 27, 433, 919, 948, 1267, 1596
MbiI CCGCTC 1 cut(s) 314
MboI GATC 6 cut(s) 25, 431, 917, 946, 1265, 1594
MfeI CAATTG 2 cut(s) 188, 590
MflI RGATCY 2 cut(s) 25, 1594
MhlI GDGCHC 2 cut(s) 620, 701
MlyI GAGTC 6 cut(s) 70, 829, 845, 1379, 1648, 1748
MmeI TCCRAC 2 cut(s) 44, 1418
Mph1103I ATGCAT 1 cut(s) 273
MroI TCCGGA 2 cut(s) 949, 1288
MroNI GCCGGC 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 1341
MseI TTAA 7 cut(s) 461, 893, 968, 1008, 1140, 1257, 1299
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 7 cut(s) 74, 206, 950, 1043, 1175, 1289, 1830
MspR9I CCNGG 4 cut(s) 88, 206, 353, 1263
MunI CAATTG 2 cut(s) 188, 590
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 3 cut(s) 88, 353, 1263
MvnI CGCG 1 cut(s) 1700
MwoI GCNNNNNNNGC 5 cut(s) 83, 533, 1029, 1706, 1715
NaeI GCCGGC 1 cut(s) 75
NciI CCSGG 1 cut(s) 206
NdeI CATATG 1 cut(s) 529
NdeII GATC 6 cut(s) 25, 431, 917, 946, 1265, 1594
NgoMIV GCCGGC 1 cut(s) 73
NlaIV GGNNCC 2 cut(s) 27, 993
NmuCI GTSAC 3 cut(s) 1038, 1170, 1731
NsiI ATGCAT 1 cut(s) 273
NspI RCATGY 1 cut(s) 450
PaeI GCATGC 1 cut(s) 450
PagI TCATGA 1 cut(s) 1477
PceI AGGCCT 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 1332
PctI GAATGC 1 cut(s) 313
PdiI GCCGGC 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 1341
PfeI GAWTC 3 cut(s) 328, 1681, 1774
PkrI GCNGC 6 cut(s) 181, 265, 313, 766, 964, 1608
PleI GAGTC 6 cut(s) 69, 829, 845, 1379, 1647, 1747
PmaCI CACGTG 1 cut(s) 278
PmlI CACGTG 1 cut(s) 278
PpsI GAGTC 6 cut(s) 69, 829, 845, 1379, 1647, 1747
Ppu21I YACGTR 2 cut(s) 278, 385
Psp1406I AACGTT 1 cut(s) 880
Psp6I CCWGG 3 cut(s) 86, 351, 1261
PspCI CACGTG 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 904
PspGI CCWGG 3 cut(s) 86, 351, 1261
PspN4I GGNNCC 2 cut(s) 27, 993
PspPI GGNCC 1 cut(s) 586
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 2 cut(s) 25, 1594
RsaI GTAC 4 cut(s) 387, 522, 691, 1528
RsaNI GTAC 4 cut(s) 386, 521, 690, 1527
RseI CAYNNNNRTG 1 cut(s) 276
SapI GCTCTTC 1 cut(s) 1332
SaqAI TTAA 7 cut(s) 461, 893, 968, 1008, 1140, 1257, 1299
SatI GCNGC 6 cut(s) 180, 264, 312, 765, 963, 1607
Sau3AI GATC 6 cut(s) 25, 431, 917, 946, 1265, 1594
Sau96I GGNCC 1 cut(s) 586
ScaI AGTACT 1 cut(s) 1528
SchI GAGTC 6 cut(s) 70, 829, 845, 1379, 1648, 1748
ScrFI CCNGG 4 cut(s) 88, 206, 353, 1263
SduI GDGCHC 2 cut(s) 620, 701
SfcI CTRYAG 2 cut(s) 180, 786
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 3 cut(s) 323, 1018, 1103
SmoI CTYRAG 3 cut(s) 323, 1018, 1103
SnaBI TACGTA 1 cut(s) 385
SphI GCATGC 1 cut(s) 450
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 4 cut(s) 312, 621, 1606, 1700
SspI AATATT 1 cut(s) 1509
SspMI CTAG 3 cut(s) 240, 1820, 1862
StuI AGGCCT 1 cut(s) 160
StyD4I CCNGG 4 cut(s) 86, 204, 351, 1261
StyI CCWWGG 1 cut(s) 1743
TaaI ACNGT 2 cut(s) 703, 757
TaiI ACGT 3 cut(s) 280, 387, 883
TaqI TCGA 1 cut(s) 750
TatI WGTACW 1 cut(s) 1526
TauI GCSGC 2 cut(s) 314, 1609
TfiI GAWTC 3 cut(s) 328, 1681, 1774
Tru1I TTAA 7 cut(s) 461, 893, 968, 1008, 1140, 1257, 1299
Tru9I TTAA 7 cut(s) 461, 893, 968, 1008, 1140, 1257, 1299
TscAI CASTG 1 cut(s) 706
TseFI GTSAC 3 cut(s) 1038, 1170, 1731
TseI GCWGC 4 cut(s) 179, 263, 764, 962
Tsp45I GTSAC 3 cut(s) 1038, 1170, 1731
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 1 cut(s) 706
XapI RAATTY 2 cut(s) 928, 1279
XceI RCATGY 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 1341
XspI CTAG 3 cut(s) 240, 1820, 1862
ZrmI AGTACT 1 cut(s) 1528
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.