Rorug05G0245800

Outer envelope protein 61

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
26431149 .. 26434269
3121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0245800.1

Sequence Viewer

Length: 726 bp
ATGACAGCCATTGTTCAAATCTCCATCAATTCCTTAGCTTTCAGGTTGAGCAGTTTGCAAAATGACACATATAACAAACCCATCAAGTATTGCTCTCTACCCAGAACAAAGACTGCTTCTTTGAAGCTCAACAGGTTCAAGTTGAGGGCTTTTTGGGAGGGAGGGTCTATCAGTGGAGATGGGATTTTGGTGAAAGATGAGGGGTGGAATAGGAAGAAGAAAAGAGATGTTGTGGTGAGGTTTAATCAGGGCTTTGGGTTTAATGGTGGAGGTGGTGGTGGGAAAGATGATGGAACTACTGCTAGGGTGTTGGGTAATATAGCTGTGGCTATTGGATTGACTTATCTTTCATTTACTGGGCAGCTGGGTTGGCTTTTGGATGCAATTGTTTCCATTTGGCTCATAGCATTTCTTGTGCCAATTGTTGGTTTGGGTGCTTTTCTGTGGTGGGCAGGACGGGATATGGTTCAAGACAGTTGCCCAAACTGCGGAAATGATTTTCAGATTTTCAAATCTACTTTAAATGATGGTATGCAGCAGTGCCCCTACTGTAGTCAGCCATTCTCTGTGGTGGACAACAAGTTTGTAATGGACCCAGTGAATTTCTCTAATCGATCTACAACATTTGGCCAGGCATTTAATGACTACACACGTTCAAAAACAGGGAAGAAGGATTCTTCTACGGCAGTTGTTGATGTTGAAGCAGAAGTAACGGATGCAGACTGA

Protein Analysis

241

Amino Acids

26.42

Weight (kDa)

8.78

Isoelectric Point (pI)

27.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 425
AciI CCGC 1 cut(s) 489
AcoI YGGCCR 1 cut(s) 628
AcsI RAATTY 1 cut(s) 601
AfiI CCNNNNNNNGG 2 cut(s) 425, 488
AflIII ACRYGT 1 cut(s) 650
AgsI TTSAA 7 cut(s) 17, 124, 139, 470, 511, 657, 701
AjnI CCWGG 1 cut(s) 630
AluBI AGCT 4 cut(s) 38, 127, 323, 364
AluI AGCT 4 cut(s) 38, 127, 323, 364
AoxI GGCC 1 cut(s) 628
ApeKI GCWGC 2 cut(s) 361, 535
ApoI RAATTY 1 cut(s) 601
ArsI GACNNNNNNTTYG 4 cut(s) 103, 135, 566, 598
AspS9I GGNCC 1 cut(s) 592
AsuHPI GGTGA 2 cut(s) 202, 247
AvaII GGWCC 1 cut(s) 592
BaeGI GKGCMC 1 cut(s) 545
BalI TGGCCA 1 cut(s) 630
BbvI GCAGC 2 cut(s) 373, 547
BccI CCATC 5 cut(s) 32, 89, 173, 284, 521
BceAI ACGGC 1 cut(s) 699
BciT130I CCWGG 1 cut(s) 632
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 550
BisI GCNGC 2 cut(s) 362, 536
BlsI GCNGC 2 cut(s) 363, 537
Bme1390I CCNGG 1 cut(s) 632
Bme18I GGWCC 1 cut(s) 592
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 1 cut(s) 594
BmrFI CCNGG 1 cut(s) 632
BmrI ACTGGG 2 cut(s) 366, 590
BmsI GCATC 2 cut(s) 370, 706
BmuI ACTGGG 2 cut(s) 366, 590
Bpu10I CCTNAGC 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 613
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 488
Bse1I ACTGG 2 cut(s) 361, 596
BseBI CCWGG 1 cut(s) 632
BseCI ATCGAT 1 cut(s) 613
BseGI GGATG 2 cut(s) 385, 721
BseLI CCNNNNNNNGG 2 cut(s) 425, 488
BseNI ACTGG 2 cut(s) 361, 596
BseSI GKGCMC 1 cut(s) 545
BseXI GCAGC 2 cut(s) 373, 547
BseYI CCCAGC 1 cut(s) 364
BshFI GGCC 1 cut(s) 630
BshVI ATCGAT 1 cut(s) 613
BslI CCNNNNNNNGG 2 cut(s) 425, 488
BsnI GGCC 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 1 cut(s) 614
BspACI CCGC 1 cut(s) 489
BspANI GGCC 1 cut(s) 630
BspDI ATCGAT 1 cut(s) 613
BspLI GGNNCC 1 cut(s) 594
BsrI ACTGG 2 cut(s) 361, 596
BssMI GATC 1 cut(s) 614
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 2 cut(s) 476, 551
BstDEI CTNAG 1 cut(s) 34
BstF5I GGATG 2 cut(s) 385, 721
BstKTI GATC 1 cut(s) 617
BstMBI GATC 1 cut(s) 614
BstMWI GCNNNNNNNGC 2 cut(s) 370, 486
BstNI CCWGG 1 cut(s) 632
BstSCI CCNGG 1 cut(s) 630
BstSFI CTRYAG 1 cut(s) 550
BstSLI GKGCMC 1 cut(s) 545
BstV1I GCAGC 2 cut(s) 373, 547
Bsu15I ATCGAT 1 cut(s) 613
BsuRI GGCC 1 cut(s) 630
BsuTUI ATCGAT 1 cut(s) 613
BtsCI GGATG 2 cut(s) 385, 721
BtsI GCAGTG 1 cut(s) 545
BtsIMutI CAGTG 3 cut(s) 178, 545, 603
Cfr13I GGNCC 1 cut(s) 592
ClaI ATCGAT 1 cut(s) 613
DdeI CTNAG 1 cut(s) 34
DpnI GATC 1 cut(s) 616
DpnII GATC 1 cut(s) 614
DraI TTTAAA 1 cut(s) 522
EaeI YGGCCR 1 cut(s) 628
Eco47I GGWCC 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 630
FaiI YATR 6 cut(s) 70, 72, 320, 404, 464, 533
Fnu4HI GCNGC 2 cut(s) 362, 536
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 362, 536
FspBI CTAG 1 cut(s) 303
GluI GCNGC 2 cut(s) 362, 536
GsaI CCCAGC 1 cut(s) 368
HaeIII GGCC 1 cut(s) 630
HinfI GANTC 1 cut(s) 674
HphI GGTGA 2 cut(s) 202, 247
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 1 cut(s) 504
Hpy188III TCNNGA 1 cut(s) 470
Hpy8I GTNNAC 1 cut(s) 574
HpyAV CCTTC 1 cut(s) 664
HpyCH4III ACNGT 2 cut(s) 476, 551
HpyCH4IV ACGT 1 cut(s) 652
HpyCH4V TGCA 4 cut(s) 58, 383, 535, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 370, 486
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 652
Kzo9I GATC 1 cut(s) 614
Lsp1109I GCAGC 2 cut(s) 373, 547
LweI GCATC 2 cut(s) 370, 706
MaeI CTAG 1 cut(s) 303
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 1 cut(s) 709
MalI GATC 1 cut(s) 616
MboI GATC 1 cut(s) 614
MboII GAAGA 4 cut(s) 226, 229, 669, 679
MfeI CAATTG 2 cut(s) 384, 420
MhlI GDGCHC 1 cut(s) 545
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 4 cut(s) 28, 384, 420, 601
MluNI TGGCCA 1 cut(s) 630
MnlI CCTC 6 cut(s) 138, 151, 155, 193, 231, 263
Mox20I TGGCCA 1 cut(s) 630
MscI TGGCCA 1 cut(s) 630
MseI TTAA 4 cut(s) 243, 261, 521, 639
Msp20I TGGCCA 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 632
MunI CAATTG 2 cut(s) 384, 420
MvaI CCWGG 1 cut(s) 632
MwoI GCNNNNNNNGC 2 cut(s) 370, 486
NdeII GATC 1 cut(s) 614
NlaIV GGNNCC 1 cut(s) 594
PfeI GAWTC 1 cut(s) 674
PflMI CCANNNNNTGG 1 cut(s) 425
PkrI GCNGC 2 cut(s) 363, 537
Psp6I CCWGG 1 cut(s) 630
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 1 cut(s) 594
PspPI GGNCC 1 cut(s) 592
PvuII CAGCTG 1 cut(s) 364
SaqAI TTAA 4 cut(s) 243, 261, 521, 639
SatI GCNGC 2 cut(s) 362, 536
Sau3AI GATC 1 cut(s) 614
Sau96I GGNCC 1 cut(s) 592
ScrFI CCNGG 1 cut(s) 632
SduI GDGCHC 1 cut(s) 545
SetI ASST 9 cut(s) 40, 47, 129, 137, 242, 274, 325, 366, 655
SfaNI GCATC 2 cut(s) 370, 706
SfcI CTRYAG 1 cut(s) 550
SinI GGWCC 1 cut(s) 592
Sse9I AATT 4 cut(s) 28, 384, 420, 601
SsiI CCGC 1 cut(s) 489
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 630
TaaI ACNGT 2 cut(s) 476, 551
TaiI ACGT 1 cut(s) 655
TaqI TCGA 1 cut(s) 613
TasI AATT 4 cut(s) 28, 384, 420, 601
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 4 cut(s) 243, 261, 521, 639
Tru9I TTAA 4 cut(s) 243, 261, 521, 639
TscAI CASTG 3 cut(s) 178, 545, 603
TseI GCWGC 2 cut(s) 361, 535
TspDTI ATGAA 1 cut(s) 339
TspRI CASTG 3 cut(s) 178, 545, 603
Van91I CCANNNNNTGG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 592
XapI RAATTY 1 cut(s) 601
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.