Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007444.1

Orthogroup ID

OG0001820

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4374

Gene Structure 4374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007444.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1271 bp

aggaggccctagttttgagcccatcacagtgtctgagggatgctaaggagaaattgggtacggagggcagtgtgtctgcaccaagaagactggtaattgaagaaataactgaagaagtcgagactgtctctgctgccaaccataaaagctcatctacagagtattctatggcaaaaccacaggaaacgagagacattcccaagactccaattgcagccgactctgaggttctgtcaaacaactcagagcatttgcaggctttaaaaaatgacccagcaactctcagatcattccagaattttatctcaaatgctgatccggatactcttgctgctttaagttctggaaaatccgaggaggttcctgctgacatggttaagactgcctcaagcatgatcagcaaaatgtcaccggaagaactgaaaagaatgattgaattggcatcctcatttgagggagataatccattgctcaagaaaggttcaccaaatctgtcaccagatatgtttaaaactgcatctgatatgatgaataaaatgccaccggaggaacttcagaaaatgtttgaaatggcttcaaaagggaagggcttatcttcaacaccagcatctaacttggacaattttaaacctggatcagttccaccaaatttgtctccggatatgcttaaaactgcatctgatatgatgagcaaaatgcctcccgaagagcttcagaaaatgtttgaaatggcatcttctatgacagggagagactcatctccaacaccagcatcattcaatgctaacaggcaaagtacatcgaggtattcagaaagccgtgaaaattctgctgtgaatgtggctcgtgatgaaggtgaaagtggctcccatggaatattgccaaatgtgagaagtactcctcaatcgagcttccctgcctctgctgttgattttcaagaacaaatgagaaaccaaatgaaagatcctgcaatgcggcagatgatgtcatcaatgatgaagaatatgagtccagacatgatggcaaacatgagtgagcaatttggtttgaatctttctcgggaagatgcggaaaaagctcatcaagcaatgtcttctttgtcaccagagtccttggacaaaatgatgcaatggatggataggattcagagaggagtggaaggtgcaaggaagacaaagaattggctgctagggaaatccggtctggtgttggcaatagtaatgctcattctagcagtaatccttcgtcgcttgggctacattggtggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046967 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2

Protein Analysis

422

Amino Acids

46.2

Weight (kDa)

5.45

Isoelectric Point (pI)

69.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21990
fragaria_vesca	FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800
malus_domestica	MD03G1160600.v1.1
prunus_persica	Prupe.6G148800_v2.0.a1 Prupe.6G148800_v2.0.a1
pyrus_communis	pycom03g11290
rosa_chinensis	RchiOBHm_Chr1g0344561 RchiOBHm_Chr1g0344771 RchiOBHm_Chr1g0344781 RchiOBHm_Chr1g0344791 RchiOBHm_Chr5g0049211
rosa_laevigata	RLG00000028875 RLG00000028876 RLG00000028883 RLG00000028888 RLG00000034600
rosa_multiflora	Rmu_sc0000141.1_g000005 Rmu_sc0001074.1_g000028 Rmu_sc0004949.1_g000001 Rmu_sc0007444.1_g000001 Rmu_sc0013714.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032520 Rroxscaffold_4G00309640
rosa_rugosa	Rorug01G0174800 Rorug05G0245800 Rorug05G0245900
rosa_samantha	Rh1AG191700 Rh1BG157800 Rh1BG157900 Rh1BG158800 Rh1CG176700 Rh1DG189200 Rh1DG189300 Rh1DG189700 Rh5AG323600 Rh5BG334100 Rh5CG359100 Rh5DG346200
rosa_wichuraiana	Rw1G015740 Rw5G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	318, 657
AciI	CCGC	2 cut(s)	975, 1069
AclWI	GGATC	3 cut(s)	310, 642, 958
AcsI	RAATTY	3 cut(s)	297, 648, 825
AcuI	CTGAAG	3 cut(s)	131, 538, 697
AfaI	GTAC	3 cut(s)	60, 798, 897
AgsI	TTSAA	9 cut(s)	100, 436, 568, 578, 599, 727, 780, 937, 1050
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	4 cut(s)	149, 711, 911, 1078
AluI	AGCT	4 cut(s)	149, 711, 911, 1078
Alw26I	GTCTC	5 cut(s)	115, 132, 185, 659, 746
AlwI	GGATC	3 cut(s)	310, 642, 958
AlwNI	CAGNNNCTG	1 cut(s)	33
Ama87I	CYCGRG	1 cut(s)	1058
Aor13HI	TCCGGA	2 cut(s)	318, 657
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	4 cut(s)	133, 214, 331, 1185
ApoI	RAATTY	3 cut(s)	297, 648, 825
Asp700I	GAANNNNTTC	1 cut(s)	710
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	5 cut(s)	401, 476, 488, 868, 1094
AvaI	CYCGRG	1 cut(s)	1058
BanII	GRGCYC	1 cut(s)	22
BauI	CACGAG	1 cut(s)	845
BbsI	GAAGAC	3 cut(s)	93, 1085, 1177
BbvI	GCAGC	4 cut(s)	120, 226, 318, 1172
BccI	CCATC	3 cut(s)	30, 1014, 1128
BceAI	ACGGC	1 cut(s)	803
BciT130I	CCWGG	1 cut(s)	632
BciVI	GTATCC	1 cut(s)	315
BclI	TGATCA	1 cut(s)	395
BcoDI	GTCTC	5 cut(s)	115, 132, 185, 659, 746
BfaI	CTAG	3 cut(s)	10, 1189, 1231
BfmI	CTRYAG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	315
BisI	GCNGC	5 cut(s)	134, 215, 332, 976, 1186
BlsI	GCNGC	5 cut(s)	135, 216, 333, 977, 1187
BmcAI	AGTACT	1 cut(s)	897
Bme1390I	CCNGG	1 cut(s)	632
BmeT110I	CYCGRG	1 cut(s)	1058
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	2 cut(s)	362, 867
BmrFI	CCNGG	1 cut(s)	632
BmsI	GCATC	9 cut(s)	30, 451, 526, 616, 685, 742, 781, 1056, 1115
BpiI	GAAGAC	3 cut(s)	93, 1085, 1177
BplI	GAGNNNNNCTC	4 cut(s)	112, 144, 882, 914
Bpu10I	CCTNAGC	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	372, 457
BsaJI	CCNNGG	3 cut(s)	353, 870, 1112
BsaWI	WCCGGW	5 cut(s)	318, 411, 543, 657, 1198
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	4 cut(s)	466, 977, 1094, 1135
BseAI	TCCGGA	2 cut(s)	318, 657
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	3 cut(s)	353, 870, 1112
BseGI	GGATG	3 cut(s)	45, 442, 1139
BseMI	GCAATG	4 cut(s)	466, 977, 1094, 1135
BseMII	CTCAG	4 cut(s)	25, 215, 257, 297
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	3 cut(s)	370, 890, 1166
BseXI	GCAGC	4 cut(s)	120, 226, 318, 1172
BseYI	CCCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	7
BsiHKCI	CYCGRG	1 cut(s)	1058
BsiSI	CCGG	5 cut(s)	319, 412, 544, 658, 1199
BsmAI	GTCTC	5 cut(s)	115, 132, 185, 659, 746
BsnI	GGCC	1 cut(s)	7
BsoBI	CYCGRG	1 cut(s)	1058
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp13I	TCCGGA	2 cut(s)	318, 657
Bsp143I	GATC	5 cut(s)	286, 315, 395, 634, 963
Bsp19I	CCATGG	1 cut(s)	870
BspACI	CCGC	2 cut(s)	975, 1069
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	4 cut(s)	26, 216, 256, 296
BspEI	TCCGGA	2 cut(s)	318, 657
BspLI	GGNNCC	2 cut(s)	362, 867
BspPI	GGATC	3 cut(s)	310, 642, 958
BspQI	GCTCTTC	1 cut(s)	701
BsrDI	GCAATG	4 cut(s)	466, 977, 1094, 1135
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	3 cut(s)	353, 870, 1112
BssMI	GATC	5 cut(s)	286, 315, 395, 634, 963
BssSI	CACGAG	1 cut(s)	845
BssT1I	CCWWGG	2 cut(s)	870, 1112
Bst2BI	CACGAG	1 cut(s)	845
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	2 cut(s)	29, 126
Bst6I	CTCTTC	1 cut(s)	701
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	5 cut(s)	34, 44, 224, 243, 283
BstDSI	CCRYGG	1 cut(s)	870
BstF5I	GGATG	3 cut(s)	45, 442, 1139
BstKTI	GATC	5 cut(s)	289, 318, 398, 637, 966
BstMAI	GTCTC	5 cut(s)	115, 132, 185, 659, 746
BstMBI	GATC	5 cut(s)	286, 315, 395, 634, 963
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 1075, 1084
BstNI	CCWGG	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	630
BstSFI	CTRYAG	1 cut(s)	155
BstV1I	GCAGC	4 cut(s)	120, 226, 318, 1172
BstV2I	GAAGAC	3 cut(s)	93, 1085, 1177
BstX2I	RGATCY	1 cut(s)	963
BstYI	RGATCY	1 cut(s)	963
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	870
BtsCI	GGATG	3 cut(s)	45, 442, 1139
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	34, 75
Cac8I	GCNNGC	1 cut(s)	257
CaiI	CAGNNNCTG	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	6
Csp6I	GTAC	3 cut(s)	59, 797, 896
CspCI	CAANNNNNGTGG	2 cut(s)	632, 667
CviAII	CATG	5 cut(s)	372, 393, 871, 1017, 1029
CviQI	GTAC	3 cut(s)	59, 797, 896
DdeI	CTNAG	5 cut(s)	34, 44, 224, 243, 283
DpnI	GATC	5 cut(s)	288, 317, 397, 636, 965
DpnII	GATC	5 cut(s)	286, 315, 395, 634, 963
DraI	TTTAAA	3 cut(s)	263, 510, 627
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
Eco130I	CCWWGG	2 cut(s)	870, 1112
Eco24I	GRGCYC	1 cut(s)	22
Eco57I	CTGAAG	3 cut(s)	131, 538, 697
Eco88I	CYCGRG	1 cut(s)	1058
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	630
EcoT14I	CCWWGG	2 cut(s)	870, 1112
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	870, 1112
FaeI	CATG	5 cut(s)	375, 396, 874, 1020, 1032
FatI	CATG	5 cut(s)	371, 392, 870, 1016, 1028
FbaI	TGATCA	1 cut(s)	395
Fnu4HI	GCNGC	5 cut(s)	134, 215, 332, 976, 1186
FokI	GGATG	3 cut(s)	52, 429, 1146
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	5 cut(s)	134, 215, 332, 976, 1186
FspBI	CTAG	3 cut(s)	10, 1189, 1231
GluI	GCNGC	5 cut(s)	134, 215, 332, 976, 1186
GsaI	CCCAGC	1 cut(s)	277
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	5 cut(s)	319, 412, 544, 658, 1199
Hin1II	CATG	5 cut(s)	375, 396, 874, 1020, 1032
HinfI	GANTC	7 cut(s)	204, 220, 754, 1008, 1050, 1108, 1143
HpaII	CCGG	5 cut(s)	319, 412, 544, 658, 1199
HphI	GGTGA	5 cut(s)	401, 476, 488, 868, 1094
Hpy166II	GTNNAC	1 cut(s)	484
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	1 cut(s)	1250
HpyAV	CCTTC	4 cut(s)	579, 847, 1153, 1252
HpyCH4III	ACNGT	2 cut(s)	29, 126
HpyCH4V	TGCA	8 cut(s)	79, 214, 255, 517, 676, 970, 1128, 1165
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 1075, 1084
HpyF3I	CTNAG	5 cut(s)	34, 44, 224, 243, 283
Hsp92II	CATG	5 cut(s)	375, 396, 874, 1020, 1032
Kpn2I	TCCGGA	2 cut(s)	318, 657
Ksp22I	TGATCA	1 cut(s)	395
Kzo9I	GATC	5 cut(s)	286, 315, 395, 634, 963
LguI	GCTCTTC	1 cut(s)	701
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	4 cut(s)	120, 226, 318, 1172
LweI	GCATC	9 cut(s)	30, 451, 526, 616, 685, 742, 781, 1056, 1115
MaeI	CTAG	3 cut(s)	10, 1189, 1231
MaeIII	GTNAC	3 cut(s)	407, 494, 1100
MalI	GATC	5 cut(s)	288, 317, 397, 636, 965
MboI	GATC	5 cut(s)	286, 315, 395, 634, 963
MfeI	CAATTG	1 cut(s)	209
MflI	RGATCY	1 cut(s)	963
MhlI	GDGCHC	1 cut(s)	22
MlyI	GAGTC	5 cut(s)	198, 214, 748, 1017, 1117
MmeI	TCCRAC	1 cut(s)	787
MroI	TCCGGA	2 cut(s)	318, 657
MroXI	GAANNNNTTC	1 cut(s)	710
MseI	TTAA	6 cut(s)	262, 337, 377, 509, 626, 668
MslI	CAYNNNNRTG	1 cut(s)	27
MspI	CCGG	5 cut(s)	319, 412, 544, 658, 1199
MspR9I	CCNGG	1 cut(s)	632
MunI	CAATTG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	632
MwoI	GCNNNNNNNGC	3 cut(s)	398, 1075, 1084
NcoI	CCATGG	1 cut(s)	870
NdeII	GATC	5 cut(s)	286, 315, 395, 634, 963
NlaIII	CATG	5 cut(s)	375, 396, 874, 1020, 1032
NlaIV	GGNNCC	2 cut(s)	362, 867
NmuCI	GTSAC	3 cut(s)	407, 494, 1100
PciSI	GCTCTTC	1 cut(s)	701
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	2 cut(s)	1050, 1143
PkrI	GCNGC	5 cut(s)	135, 216, 333, 977, 1187
PleI	GAGTC	5 cut(s)	198, 214, 748, 1016, 1116
PpsI	GAGTC	5 cut(s)	198, 214, 748, 1016, 1116
Psp6I	CCWGG	1 cut(s)	630
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	2 cut(s)	362, 867
PspPI	GGNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	963
RsaI	GTAC	3 cut(s)	60, 798, 897
RsaNI	GTAC	3 cut(s)	59, 797, 896
RseI	CAYNNNNRTG	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	701
SaqAI	TTAA	6 cut(s)	262, 337, 377, 509, 626, 668
SatI	GCNGC	5 cut(s)	134, 215, 332, 976, 1186
Sau3AI	GATC	5 cut(s)	286, 315, 395, 634, 963
Sau96I	GGNCC	1 cut(s)	6
ScaI	AGTACT	1 cut(s)	897
SchI	GAGTC	5 cut(s)	198, 214, 748, 1017, 1117
ScrFI	CCNGG	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	22
SfaNI	GCATC	9 cut(s)	30, 451, 526, 616, 685, 742, 781, 1056, 1115
SfcI	CTRYAG	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	2 cut(s)	387, 472
SmoI	CTYRAG	2 cut(s)	387, 472
SsiI	CCGC	2 cut(s)	975, 1069
SspI	AATATT	1 cut(s)	878
SspMI	CTAG	3 cut(s)	10, 1189, 1231
StyD4I	CCNGG	1 cut(s)	630
StyI	CCWWGG	2 cut(s)	870, 1112
TaaI	ACNGT	2 cut(s)	29, 126
TaqI	TCGA	3 cut(s)	119, 802, 907
TatI	WGTACW	2 cut(s)	796, 895
TauI	GCSGC	1 cut(s)	978
TfiI	GAWTC	2 cut(s)	1050, 1143
Tru1I	TTAA	6 cut(s)	262, 337, 377, 509, 626, 668
Tru9I	TTAA	6 cut(s)	262, 337, 377, 509, 626, 668
TscAI	CASTG	2 cut(s)	34, 75
TseFI	GTSAC	3 cut(s)	407, 494, 1100
TseI	GCWGC	4 cut(s)	133, 214, 331, 1185
Tsp45I	GTSAC	3 cut(s)	407, 494, 1100
TspDTI	ATGAA	4 cut(s)	544, 866, 973, 1012
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	2 cut(s)	34, 75
XapI	RAATTY	3 cut(s)	297, 648, 825
XmnI	GAANNNNTTC	1 cut(s)	710
XspI	CTAG	3 cut(s)	10, 1189, 1231
ZrmI	AGTACT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.