Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001820

Physical Location & Seq

Genomic Coordinates Reverse (-)

37086331 .. 37086810

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCATGCACGTGTTGATGCCGAAGTCAGTTACAAATTGAATGCATCTCAGATGCTCAAGAATCAGGGAAATGAACTTCACAGCCAGGGAAAGTTCAACGATGCCATGCAGAAGTACGTACTTGCAAAGACAAATTTGAATGGCCTTCCATCCTCTAAAGGAAGATCACTACTGATGGCATGCTCACTCAATTTAATGTCATGTTACTTGAAAACAAGGCAGTATTATGAATGTATAAAAGAAGGTTCTGAGGTACTGGCATGTGATGCACAGAATGTGAAAGCTCTCTATCGGAGAGGTCAAGCATGTAAAGAATGTGGTCAATTGGAAGATGCTGTCTATGACCTGAGCATGGCACATGAAGTTTCCCCTGATGATGAAACTATTGCGGATGTTCTAAGGGAAGCTAAGGAAAACTTCGGTACAGAGGGCAGTGTGTCAGCAGTTCTGCACCAAGAAGACTGGTTATTGAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046967 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2

Protein Analysis

159

Amino Acids

17.77

Weight (kDa)

5.82

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21990
fragaria_vesca	FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800
malus_domestica	MD03G1160600.v1.1
prunus_persica	Prupe.6G148800_v2.0.a1 Prupe.6G148800_v2.0.a1
pyrus_communis	pycom03g11290
rosa_chinensis	RchiOBHm_Chr1g0344561 RchiOBHm_Chr1g0344771 RchiOBHm_Chr1g0344781 RchiOBHm_Chr1g0344791 RchiOBHm_Chr5g0049211
rosa_laevigata	RLG00000028875 RLG00000028876 RLG00000028883 RLG00000028888 RLG00000034600
rosa_multiflora	Rmu_sc0000141.1_g000005 Rmu_sc0001074.1_g000028 Rmu_sc0004949.1_g000001 Rmu_sc0007444.1_g000001 Rmu_sc0013714.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032520 Rroxscaffold_4G00309640
rosa_rugosa	Rorug01G0174800 Rorug05G0245800 Rorug05G0245900
rosa_samantha	Rh1AG191700 Rh1BG157800 Rh1BG157900 Rh1BG158800 Rh1CG176700 Rh1DG189200 Rh1DG189300 Rh1DG189700 Rh5AG323600 Rh5BG334100 Rh5CG359100 Rh5DG346200
rosa_wichuraiana	Rw1G015740 Rw5G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	133
AcvI	CACGTG	1 cut(s)	11
AfaI	GTAC	4 cut(s)	116, 120, 255, 424
AfiI	CCNNNNNNNGG	1 cut(s)	352
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	5 cut(s)	40, 97, 139, 211, 472
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	2 cut(s)	284, 407
AluI	AGCT	2 cut(s)	284, 407
AoxI	GGCC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	133
BbrPI	CACGTG	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	465
BccI	CCATC	2 cut(s)	157, 169
BciT130I	CCWGG	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	6 cut(s)	7, 42, 53, 91, 256, 322
BpiI	GAAGAC	1 cut(s)	465
Bpu10I	CCTNAGC	2 cut(s)	347, 408
BpuEI	CTTGAG	1 cut(s)	41
BsaAI	YACGTR	2 cut(s)	11, 118
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	2 cut(s)	261, 467
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	149, 397
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	3 cut(s)	62, 240, 338
BseNI	ACTGG	2 cut(s)	261, 467
BsgI	GTGCAG	1 cut(s)	434
BshFI	GGCC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	164
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	3 cut(s)	61, 241, 339
BsrI	ACTGG	2 cut(s)	261, 467
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstBAI	YACGTR	2 cut(s)	11, 118
BstC8I	GCNNGC	2 cut(s)	6, 181
BstDEI	CTNAG	5 cut(s)	48, 249, 347, 398, 408
BstF5I	GGATG	2 cut(s)	149, 397
BstKTI	GATC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	4 cut(s)	8, 183, 264, 309
BstSCI	CCNGG	1 cut(s)	84
BstSNI	TACGTA	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	149, 397
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	6, 181
Csp6I	GTAC	4 cut(s)	115, 119, 254, 423
CviAII	CATG	8 cut(s)	5, 106, 180, 201, 261, 306, 352, 359
CviJI	RGCY	4 cut(s)	84, 144, 284, 407
CviKI_1	RGCY	4 cut(s)	84, 144, 284, 407
CviQI	GTAC	4 cut(s)	115, 119, 254, 423
DdeI	CTNAG	5 cut(s)	48, 249, 347, 398, 408
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
Eco105I	TACGTA	1 cut(s)	118
Eco72I	CACGTG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	84
EcoT22I	ATGCAT	2 cut(s)	6, 46
FaeI	CATG	8 cut(s)	8, 109, 183, 204, 264, 309, 355, 362
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	8 cut(s)	4, 105, 179, 200, 260, 305, 351, 358
FokI	GGATG	2 cut(s)	136, 404
HaeIII	GGCC	1 cut(s)	144
Hin1II	CATG	8 cut(s)	8, 109, 183, 204, 264, 309, 355, 362
HinfI	GANTC	1 cut(s)	61
Hpy188I	TCNGA	3 cut(s)	51, 250, 294
Hpy188III	TCNNGA	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	155, 236
HpyCH4IV	ACGT	2 cut(s)	10, 117
HpyCH4V	TGCA	7 cut(s)	4, 8, 44, 109, 125, 269, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	5 cut(s)	48, 249, 347, 398, 408
HpySE526I	ACGT	2 cut(s)	10, 117
Hsp92II	CATG	8 cut(s)	8, 109, 183, 204, 264, 309, 355, 362
Kzo9I	GATC	1 cut(s)	164
LpnPI	CCDG	7 cut(s)	50, 71, 98, 242, 359, 384, 448
LweI	GCATC	6 cut(s)	7, 42, 53, 91, 256, 322
MaeII	ACGT	2 cut(s)	10, 117
MaeIII	GTNAC	2 cut(s)	29, 203
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MboII	GAAGA	3 cut(s)	174, 341, 470
MfeI	CAATTG	1 cut(s)	323
MluCI	AATT	4 cut(s)	35, 133, 190, 323
MnlI	CCTC	4 cut(s)	163, 244, 290, 421
Mph1103I	ATGCAT	2 cut(s)	6, 46
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	86
MunI	CAATTG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	8 cut(s)	8, 109, 183, 204, 264, 309, 355, 362
NsiI	ATGCAT	2 cut(s)	6, 46
NspI	RCATGY	4 cut(s)	8, 183, 264, 309
PaeI	GCATGC	2 cut(s)	8, 183
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	61
PmaCI	CACGTG	1 cut(s)	11
PmlI	CACGTG	1 cut(s)	11
Ppu21I	YACGTR	2 cut(s)	11, 118
Psp6I	CCWGG	1 cut(s)	84
PspCI	CACGTG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	84
RsaI	GTAC	4 cut(s)	116, 120, 255, 424
RsaNI	GTAC	4 cut(s)	115, 119, 254, 423
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	8 cut(s)	13, 120, 247, 255, 286, 301, 348, 409
SfaNI	GCATC	6 cut(s)	7, 42, 53, 91, 256, 322
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SnaBI	TACGTA	1 cut(s)	118
SphI	GCATGC	2 cut(s)	8, 183
Sse9I	AATT	4 cut(s)	35, 133, 190, 323
SsiI	CCGC	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	84
TaiI	ACGT	2 cut(s)	13, 120
TasI	AATT	4 cut(s)	35, 133, 190, 323
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	439
TspDTI	ATGAA	4 cut(s)	87, 243, 375, 393
TspRI	CASTG	1 cut(s)	439
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	4 cut(s)	8, 183, 264, 309
Zsp2I	ATGCAT	2 cut(s)	6, 46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.