Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001820

Physical Location & Seq

Genomic Coordinates Reverse (-)

37818861 .. 37820233

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG189300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTCAACGGGATGAATATGATGGATCCAGAATTGATGAAACTTGCTCAGGAGCAGATGAGTCGGATGTCACCGGTTGATTTCGCCAGGATTCAACAACAGATGATAGCTAATCCAGAATTGATGAAGATGGCATCAGAGAGCATGAAGAATATGAGGCCTGAAGATTTGAAACTGGCTGCAGAGCAATTGAAACAGACACGTCCAGAAGAGATGGCTGAGATTGGGGAGAAGATGGCTAGTGCATCGCCCGAAGAGATAGCAGCCATGCATGCACGTGTTGATGCCCAAGTCAGTTACAAATTGAATGCATCTCAGATGCTCAAGAATCAGGGAAACGCACTTCACAGCCAGGGAAAGTTCAACGATGCGTTGCAGAAATACAAAAAGCAAAATGGGGCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046967 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2

Protein Analysis

135

Amino Acids

15.24

Weight (kDa)

6.74

Isoelectric Point (pI)

61.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21990
fragaria_vesca	FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800
malus_domestica	MD03G1160600.v1.1
prunus_persica	Prupe.6G148800_v2.0.a1 Prupe.6G148800_v2.0.a1
pyrus_communis	pycom03g11290
rosa_chinensis	RchiOBHm_Chr1g0344561 RchiOBHm_Chr1g0344771 RchiOBHm_Chr1g0344781 RchiOBHm_Chr1g0344791 RchiOBHm_Chr5g0049211
rosa_laevigata	RLG00000028875 RLG00000028876 RLG00000028883 RLG00000028888 RLG00000034600
rosa_multiflora	Rmu_sc0000141.1_g000005 Rmu_sc0001074.1_g000028 Rmu_sc0004949.1_g000001 Rmu_sc0007444.1_g000001 Rmu_sc0013714.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032520 Rroxscaffold_4G00309640
rosa_rugosa	Rorug01G0174800 Rorug05G0245800 Rorug05G0245900
rosa_samantha	Rh1AG191700 Rh1BG157800 Rh1BG157900 Rh1BG158800 Rh1CG176700 Rh1DG189200 Rh1DG189300 Rh1DG189700 Rh5AG323600 Rh5BG334100 Rh5CG359100 Rh5DG346200
rosa_wichuraiana	Rw1G015740 Rw5G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	2 cut(s)	20, 33
AcuI	CTGAAG	1 cut(s)	183
AcvI	CACGTG	1 cut(s)	278
AflIII	ACRYGT	2 cut(s)	200, 277
AgeI	ACCGGT	1 cut(s)	73
AgsI	TTSAA	6 cut(s)	7, 95, 172, 193, 307, 364
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	2 cut(s)	86, 351
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
AlwI	GGATC	2 cut(s)	20, 33
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	179, 263
AsiGI	ACCGGT	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	63
BamHI	GGATCC	1 cut(s)	25
BbrPI	CACGTG	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	166, 275
BccI	CCATC	4 cut(s)	16, 124, 208, 229
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	2 cut(s)	88, 353
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	180, 264
BlsI	GCNGC	2 cut(s)	181, 265
Bme1390I	CCNGG	2 cut(s)	88, 353
BmgBI	CACGTC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	88, 353
BmsI	GCATC	6 cut(s)	143, 254, 274, 309, 320, 358
Bpu10I	CCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	352
BsaWI	WCCGGW	1 cut(s)	73
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	88, 353
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	2 cut(s)	18, 72
BseMII	CTCAG	3 cut(s)	62, 210, 329
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	166, 275
BshFI	GGCC	1 cut(s)	160
BshTI	ACCGGT	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	3 cut(s)	61, 211, 328
BspLI	GGNNCC	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	2 cut(s)	20, 33
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	1 cut(s)	25
Bst2UI	CCWGG	2 cut(s)	88, 353
Bst6I	CTCTTC	2 cut(s)	204, 249
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	3 cut(s)	48, 219, 315
BstF5I	GGATG	2 cut(s)	18, 72
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	88, 353
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	2 cut(s)	86, 351
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	166, 275
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	160
BtgZI	GCGATG	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	18, 72
Cac8I	GCNNGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	73
CspAI	ACCGGT	1 cut(s)	73
CviAII	CATG	3 cut(s)	145, 268, 272
CviJI	RGCY	7 cut(s)	110, 160, 179, 218, 239, 266, 351
CviKI_1	RGCY	7 cut(s)	110, 160, 179, 218, 239, 266, 351
DdeI	CTNAG	3 cut(s)	48, 219, 315
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	204, 249
EarI	CTCTTC	2 cut(s)	204, 249
Eco147I	AGGCCT	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	183
Eco72I	CACGTG	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	86, 351
EcoT22I	ATGCAT	2 cut(s)	273, 313
FaeI	CATG	3 cut(s)	148, 271, 275
FaiI	YATR	5 cut(s)	20, 146, 155, 269, 273
FatI	CATG	3 cut(s)	144, 267, 271
Fnu4HI	GCNGC	2 cut(s)	180, 264
FokI	GGATG	2 cut(s)	25, 79
Fsp4HI	GCNGC	2 cut(s)	180, 264
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	2 cut(s)	180, 264
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	74
Hin1II	CATG	3 cut(s)	148, 271, 275
HinfI	GANTC	3 cut(s)	61, 91, 328
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	1 cut(s)	63
Hpy188I	TCNGA	3 cut(s)	66, 139, 318
Hpy188III	TCNNGA	5 cut(s)	29, 50, 116, 206, 325
HpyCH4IV	ACGT	2 cut(s)	202, 277
HpyCH4V	TGCA	6 cut(s)	182, 245, 271, 275, 311, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	48, 219, 315
HpySE526I	ACGT	2 cut(s)	202, 277
Hsp92II	CATG	3 cut(s)	148, 271, 275
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	2 cut(s)	166, 275
LweI	GCATC	6 cut(s)	143, 254, 274, 309, 320, 358
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	202, 277
MaeIII	GTNAC	2 cut(s)	69, 296
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	6 cut(s)	139, 160, 176, 221, 244, 266
MfeI	CAATTG	1 cut(s)	188
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	4 cut(s)	32, 119, 188, 302
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	1 cut(s)	150
Mph1103I	ATGCAT	2 cut(s)	273, 313
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	88, 353
MunI	CAATTG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	2 cut(s)	88, 353
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	148, 271, 275
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	69
NsiI	ATGCAT	2 cut(s)	273, 313
NspI	RCATGY	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	160
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	91, 328
PinAI	ACCGGT	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	181, 265
PleI	GAGTC	1 cut(s)	69
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	69
Ppu21I	YACGTR	1 cut(s)	278
Psp6I	CCWGG	2 cut(s)	86, 351
PspCI	CACGTG	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	86, 351
PspN4I	GGNNCC	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	276
SatI	GCNGC	2 cut(s)	180, 264
Sau3AI	GATC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	88, 353
SetI	ASST	3 cut(s)	112, 205, 280
SfaNI	GCATC	6 cut(s)	143, 254, 274, 309, 320, 358
SfcI	CTRYAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	4 cut(s)	32, 119, 188, 302
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	401
SspMI	CTAG	1 cut(s)	240
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	86, 351
TaiI	ACGT	2 cut(s)	205, 280
TasI	AATT	4 cut(s)	32, 119, 188, 302
TfiI	GAWTC	2 cut(s)	91, 328
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	2 cut(s)	179, 263
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	4 cut(s)	29, 53, 140, 161
XceI	RCATGY	1 cut(s)	275
XspI	CTAG	1 cut(s)	240
Zsp2I	ATGCAT	2 cut(s)	273, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.