Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001820

Physical Location & Seq

Genomic Coordinates Reverse (-)

48376376 .. 48383861

Gene Structure 7486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG323600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGTACAGTTTCCATAAGATCAGCAGAAGGCATAATGGAAATGCACTTCACAGCCAGGGAAAGTTCAATGATGCCTTGCAGAAATACGTACTCGCAAAGACAAACTTGAATGGCCTTCCATCCTCTAAAGGAAGATCACTTCTGATGGCATGCTCACTCAACTTAATGTCATGTTACTTGAAAACAAGGCAGTATGATGAATGTATAAAAGAAGGTTCTGAGGTACTGGAATATGATGCACAGAATGTGAAAGCTCTCTATCGGAGAGGTCAAGCATATAAAGAATTGGGTCAATTGGAAGATGCTGTCTCTGACCTGAGCACCGCACATGAAGTTTCCCCTGATGATGAAACTATTGCAGATGTTCTAAGGGATGCTAAGGAGAAATTGGGTACGGAGGGCAGTGTGTCTGCACCAAGAAGACTGGTAATTGAAGAAATAACTGAAGAAGTCGATACTGTCTCTGCTGCCAACCATAAAAGCTCATCTACAGAGTATTCTATGGCAAAACCACAGGAAACGAGAGACATTCCCAAGACTCAAATTGCAGCCGACTCTGAGGTTCTGTCAAACAACTCAGAGCATTTGCAGGCTTTAAAAAATGACCCAGCAACTCTCAGATCATTCCAGAATTTTATCTCAAATGCTGATCCGGATACTCTTGCTGCTTTAAGTTCTGGAAAATCCGAGGAGGTTCCTGCTGACATGGTTAAGACTGCCTCAAGCATGATCAGCAAAATGTCACCAGAAGAACTGAAAAGAATGATTGAATTGGCATCCTCATTTGAGGGAGATAATCCATTGCTCAAGAAAGGTTCACCAAATCTGTCACCAGATATGTTTAAAACTGCATCTGATATGATGAATAAAATGCCACCAGAGGAACTTCAGAAAATGTTTGAAATGGCTTCAAAAGGGAAGGGCTTATCTTCAACACCAGCATCTAACTTGGACAATTTTAAACCTGGATCAGTTCCACCAAATTTGTCTCCGGATATGCTTAAAACTGCATCTGATATGATGAGCAAAATGCCCCCCGAAGAGCTTCAGAAAATGTTTGAAATGGCATCTTCTATGACAGGGAGAGACTCATCTCCAACACCAGCATCATTCAATGCTAACAGGCAAAGTTCATCGAGGTATTCAGAAAGCCGTGAAAATTCTGCTGTGAATGTGGCTCGTGATGAAGGTGAAAGTAGCTCTCATGGAATATTGCCAAATGTGAGAAGTACTCCTCAATCGAGCTTCCCTGCCTCTGCTGTTGATTTTCAAGAACAAATGAGAAACCAAATGAAAGATCCTGCAATGCGGCAGATGATGTCATCAATGATGAAGAATATGAGTCCAGACATGATGGCAAACATGAGTGAACAATTTGGTTTGAATCTTTCTCGGGAAGATGCGGAAAAAGCTCATCAAGCAATGTCTTCTTTGTCACCAGAGTCCTTGGACAAAATGATGCAATGGATGGATAGGATTCAGAGAGGAGTGGAAGGTGCAAGGAAGACAAAGAATTGGCTGCTAGGGAAATCCGGTCTGGTGTTGGCAATAGTAATGCTCATTCTAGCAGTAATCCTTCGTCGCTTGGGCTACATTGGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046967 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2

Protein Analysis

534

Amino Acids

58.89

Weight (kDa)

5.8

Isoelectric Point (pI)

66.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	83 - 116	3.3e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21990
fragaria_vesca	FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800
malus_domestica	MD03G1160600.v1.1
prunus_persica	Prupe.6G148800_v2.0.a1 Prupe.6G148800_v2.0.a1
pyrus_communis	pycom03g11290
rosa_chinensis	RchiOBHm_Chr1g0344561 RchiOBHm_Chr1g0344771 RchiOBHm_Chr1g0344781 RchiOBHm_Chr1g0344791 RchiOBHm_Chr5g0049211
rosa_laevigata	RLG00000028875 RLG00000028876 RLG00000028883 RLG00000028888 RLG00000034600
rosa_multiflora	Rmu_sc0000141.1_g000005 Rmu_sc0001074.1_g000028 Rmu_sc0004949.1_g000001 Rmu_sc0007444.1_g000001 Rmu_sc0013714.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032520 Rroxscaffold_4G00309640
rosa_rugosa	Rorug01G0174800 Rorug05G0245800 Rorug05G0245900
rosa_samantha	Rh1AG191700 Rh1BG157800 Rh1BG157900 Rh1BG158800 Rh1CG176700 Rh1DG189200 Rh1DG189300 Rh1DG189700 Rh5AG323600 Rh5BG334100 Rh5CG359100 Rh5DG346200
rosa_wichuraiana	Rw1G015740 Rw5G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	652, 991
AciI	CCGC	3 cut(s)	324, 1309, 1403
AclWI	GGATC	3 cut(s)	644, 976, 1292
AcsI	RAATTY	3 cut(s)	631, 982, 1159
AcuI	CTGAAG	3 cut(s)	465, 872, 1031
AfaI	GTAC	5 cut(s)	5, 90, 225, 394, 1231
AjnI	CCWGG	2 cut(s)	54, 964
AluBI	AGCT	6 cut(s)	254, 483, 1045, 1200, 1245, 1412
AluI	AGCT	6 cut(s)	254, 483, 1045, 1200, 1245, 1412
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	5 cut(s)	313, 466, 519, 993, 1080
AlwI	GGATC	3 cut(s)	644, 976, 1292
Ama87I	CYCGRG	1 cut(s)	1392
Aor13HI	TCCGGA	2 cut(s)	652, 991
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	4 cut(s)	467, 548, 665, 1519
ApoI	RAATTY	3 cut(s)	631, 982, 1159
Asp700I	GAANNNNTTC	1 cut(s)	1044
AsuHPI	GGTGA	5 cut(s)	735, 810, 822, 1202, 1428
AvaI	CYCGRG	1 cut(s)	1392
BauI	CACGAG	1 cut(s)	1179
BbsI	GAAGAC	3 cut(s)	427, 1419, 1511
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	4 cut(s)	454, 560, 652, 1506
BccI	CCATC	4 cut(s)	127, 139, 1348, 1462
BceAI	ACGGC	1 cut(s)	1137
BciT130I	CCWGG	2 cut(s)	56, 966
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	1 cut(s)	729
BcoDI	GTCTC	5 cut(s)	313, 466, 519, 993, 1080
BfaI	CTAG	2 cut(s)	1523, 1565
BfmI	CTRYAG	1 cut(s)	489
BfuI	GTATCC	1 cut(s)	649
BisI	GCNGC	5 cut(s)	468, 549, 666, 1310, 1520
BlsI	GCNGC	5 cut(s)	469, 550, 667, 1311, 1521
BmcAI	AGTACT	1 cut(s)	1231
Bme1390I	CCNGG	2 cut(s)	56, 966
BmeT110I	CYCGRG	1 cut(s)	1392
BmiI	GGNNCC	1 cut(s)	696
BmrFI	CCNGG	2 cut(s)	56, 966
BpiI	GAAGAC	3 cut(s)	427, 1419, 1511
BplI	GAGNNNNNCTC	2 cut(s)	1216, 1248
Bpu10I	CCTNAGC	2 cut(s)	317, 378
BpuEI	CTTGAG	2 cut(s)	706, 791
BsaAI	YACGTR	1 cut(s)	88
BsaJI	CCNNGG	3 cut(s)	55, 687, 1446
BsaWI	WCCGGW	3 cut(s)	652, 991, 1532
Bse1I	ACTGG	2 cut(s)	231, 429
Bse3DI	GCAATG	4 cut(s)	800, 1311, 1428, 1469
BseAI	TCCGGA	2 cut(s)	652, 991
BseBI	CCWGG	2 cut(s)	56, 966
BseDI	CCNNGG	3 cut(s)	55, 687, 1446
BseGI	GGATG	4 cut(s)	119, 379, 776, 1473
BseMI	GCAATG	4 cut(s)	800, 1311, 1428, 1469
BseMII	CTCAG	5 cut(s)	210, 308, 549, 591, 631
BseNI	ACTGG	2 cut(s)	231, 429
BseRI	GAGGAG	3 cut(s)	704, 1224, 1500
BseXI	GCAGC	4 cut(s)	454, 560, 652, 1506
BseYI	CCCAGC	1 cut(s)	607
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	323
BsiHKCI	CYCGRG	1 cut(s)	1392
BsiSI	CCGG	3 cut(s)	653, 992, 1533
BsmAI	GTCTC	5 cut(s)	313, 466, 519, 993, 1080
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	1392
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp13I	TCCGGA	2 cut(s)	652, 991
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	7 cut(s)	18, 134, 620, 649, 729, 968, 1297
BspACI	CCGC	3 cut(s)	324, 1309, 1403
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	5 cut(s)	211, 309, 550, 590, 630
BspEI	TCCGGA	2 cut(s)	652, 991
BspLI	GGNNCC	1 cut(s)	696
BspPI	GGATC	3 cut(s)	644, 976, 1292
BspQI	GCTCTTC	1 cut(s)	1035
BsrDI	GCAATG	4 cut(s)	800, 1311, 1428, 1469
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	231, 429
BssECI	CCNNGG	3 cut(s)	55, 687, 1446
BssMI	GATC	7 cut(s)	18, 134, 620, 649, 729, 968, 1297
BssSI	CACGAG	1 cut(s)	1179
BssT1I	CCWWGG	1 cut(s)	1446
Bst2BI	CACGAG	1 cut(s)	1179
Bst2UI	CCWGG	2 cut(s)	56, 966
Bst4CI	ACNGT	2 cut(s)	8, 460
Bst6I	CTCTTC	1 cut(s)	1035
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	151, 591
BstDEI	CTNAG	7 cut(s)	219, 317, 368, 378, 558, 577, 617
BstF5I	GGATG	4 cut(s)	119, 379, 776, 1473
BstKTI	GATC	7 cut(s)	21, 137, 623, 652, 732, 971, 1300
BstMAI	GTCTC	5 cut(s)	313, 466, 519, 993, 1080
BstMBI	GATC	7 cut(s)	18, 134, 620, 649, 729, 968, 1297
BstMWI	GCNNNNNNNGC	3 cut(s)	732, 1409, 1418
BstNI	CCWGG	2 cut(s)	56, 966
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	2 cut(s)	54, 964
BstSFI	CTRYAG	1 cut(s)	489
BstSNI	TACGTA	1 cut(s)	88
BstV1I	GCAGC	4 cut(s)	454, 560, 652, 1506
BstV2I	GAAGAC	3 cut(s)	427, 1419, 1511
BstX2I	RGATCY	1 cut(s)	1297
BstYI	RGATCY	1 cut(s)	1297
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	4 cut(s)	119, 379, 776, 1473
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	151, 591
Csp6I	GTAC	5 cut(s)	4, 89, 224, 393, 1230
CspCI	CAANNNNNGTGG	2 cut(s)	966, 1001
CviAII	CATG	8 cut(s)	150, 171, 329, 706, 727, 1205, 1351, 1363
CviQI	GTAC	5 cut(s)	4, 89, 224, 393, 1230
DdeI	CTNAG	7 cut(s)	219, 317, 368, 378, 558, 577, 617
DpnI	GATC	7 cut(s)	20, 136, 622, 651, 731, 970, 1299
DpnII	GATC	7 cut(s)	18, 134, 620, 649, 729, 968, 1297
DraI	TTTAAA	3 cut(s)	597, 844, 961
Eam1104I	CTCTTC	1 cut(s)	1035
EarI	CTCTTC	1 cut(s)	1035
Eco105I	TACGTA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	1446
Eco57I	CTGAAG	3 cut(s)	465, 872, 1031
Eco88I	CYCGRG	1 cut(s)	1392
EcoRII	CCWGG	2 cut(s)	54, 964
EcoT14I	CCWWGG	1 cut(s)	1446
ErhI	CCWWGG	1 cut(s)	1446
FaeI	CATG	8 cut(s)	153, 174, 332, 709, 730, 1208, 1354, 1366
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FatI	CATG	8 cut(s)	149, 170, 328, 705, 726, 1204, 1350, 1362
FbaI	TGATCA	1 cut(s)	729
Fnu4HI	GCNGC	5 cut(s)	468, 549, 666, 1310, 1520
FokI	GGATG	4 cut(s)	106, 386, 763, 1480
Fsp4HI	GCNGC	5 cut(s)	468, 549, 666, 1310, 1520
FspBI	CTAG	2 cut(s)	1523, 1565
GluI	GCNGC	5 cut(s)	468, 549, 666, 1310, 1520
GsaI	CCCAGC	1 cut(s)	611
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	3 cut(s)	653, 992, 1533
Hin1II	CATG	8 cut(s)	153, 174, 332, 709, 730, 1208, 1354, 1366
HinfI	GANTC	7 cut(s)	538, 554, 1088, 1342, 1384, 1442, 1477
HpaII	CCGG	3 cut(s)	653, 992, 1533
HphI	GGTGA	5 cut(s)	735, 810, 822, 1202, 1428
Hpy166II	GTNNAC	2 cut(s)	818, 1370
Hpy188III	TCNNGA	9 cut(s)	628, 653, 678, 808, 992, 1181, 1271, 1346, 1394
Hpy8I	GTNNAC	2 cut(s)	818, 1370
Hpy99I	CGWCG	1 cut(s)	1584
HpyAV	CCTTC	7 cut(s)	21, 125, 206, 913, 1181, 1487, 1586
HpyCH4III	ACNGT	2 cut(s)	8, 460
HpyCH4IV	ACGT	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	3 cut(s)	732, 1409, 1418
HpyF3I	CTNAG	7 cut(s)	219, 317, 368, 378, 558, 577, 617
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	8 cut(s)	153, 174, 332, 709, 730, 1208, 1354, 1366
Kpn2I	TCCGGA	2 cut(s)	652, 991
Ksp22I	TGATCA	1 cut(s)	729
Kzo9I	GATC	7 cut(s)	18, 134, 620, 649, 729, 968, 1297
LguI	GCTCTTC	1 cut(s)	1035
Lsp1109I	GCAGC	4 cut(s)	454, 560, 652, 1506
MaeI	CTAG	2 cut(s)	1523, 1565
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	4 cut(s)	173, 741, 828, 1434
MalI	GATC	7 cut(s)	20, 136, 622, 651, 731, 970, 1299
MboI	GATC	7 cut(s)	18, 134, 620, 649, 729, 968, 1297
MfeI	CAATTG	1 cut(s)	293
MflI	RGATCY	1 cut(s)	1297
MhlI	GDGCHC	1 cut(s)	323
MlyI	GAGTC	5 cut(s)	532, 548, 1082, 1351, 1451
MmeI	TCCRAC	1 cut(s)	1121
MroI	TCCGGA	2 cut(s)	652, 991
MroXI	GAANNNNTTC	1 cut(s)	1044
MseI	TTAA	7 cut(s)	164, 596, 671, 711, 843, 960, 1002
MspI	CCGG	3 cut(s)	653, 992, 1533
MspR9I	CCNGG	2 cut(s)	56, 966
MunI	CAATTG	1 cut(s)	293
MvaI	CCWGG	2 cut(s)	56, 966
MwoI	GCNNNNNNNGC	3 cut(s)	732, 1409, 1418
NdeII	GATC	7 cut(s)	18, 134, 620, 649, 729, 968, 1297
NlaIII	CATG	8 cut(s)	153, 174, 332, 709, 730, 1208, 1354, 1366
NlaIV	GGNNCC	1 cut(s)	696
NmuCI	GTSAC	3 cut(s)	741, 828, 1434
NspI	RCATGY	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	1035
PdmI	GAANNNNTTC	1 cut(s)	1044
PfeI	GAWTC	2 cut(s)	1384, 1477
PkrI	GCNGC	5 cut(s)	469, 550, 667, 1311, 1521
PleI	GAGTC	5 cut(s)	532, 548, 1082, 1350, 1450
PpsI	GAGTC	5 cut(s)	532, 548, 1082, 1350, 1450
Ppu21I	YACGTR	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	54, 964
PspFI	CCCAGC	1 cut(s)	607
PspGI	CCWGG	2 cut(s)	54, 964
PspN4I	GGNNCC	1 cut(s)	696
PsuI	RGATCY	1 cut(s)	1297
RsaI	GTAC	5 cut(s)	5, 90, 225, 394, 1231
RsaNI	GTAC	5 cut(s)	4, 89, 224, 393, 1230
SapI	GCTCTTC	1 cut(s)	1035
SaqAI	TTAA	7 cut(s)	164, 596, 671, 711, 843, 960, 1002
SatI	GCNGC	5 cut(s)	468, 549, 666, 1310, 1520
Sau3AI	GATC	7 cut(s)	18, 134, 620, 649, 729, 968, 1297
ScaI	AGTACT	1 cut(s)	1231
SchI	GAGTC	5 cut(s)	532, 548, 1082, 1351, 1451
ScrFI	CCNGG	2 cut(s)	56, 966
SduI	GDGCHC	1 cut(s)	323
SfcI	CTRYAG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	721, 806
SmoI	CTYRAG	2 cut(s)	721, 806
SnaBI	TACGTA	1 cut(s)	88
SphI	GCATGC	1 cut(s)	153
SsiI	CCGC	3 cut(s)	324, 1309, 1403
SspI	AATATT	1 cut(s)	1212
SspMI	CTAG	2 cut(s)	1523, 1565
StyD4I	CCNGG	2 cut(s)	54, 964
StyI	CCWWGG	1 cut(s)	1446
TaaI	ACNGT	2 cut(s)	8, 460
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	3 cut(s)	453, 1136, 1241
TatI	WGTACW	2 cut(s)	3, 1229
TauI	GCSGC	1 cut(s)	1312
TfiI	GAWTC	2 cut(s)	1384, 1477
Tru1I	TTAA	7 cut(s)	164, 596, 671, 711, 843, 960, 1002
Tru9I	TTAA	7 cut(s)	164, 596, 671, 711, 843, 960, 1002
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	3 cut(s)	741, 828, 1434
TseI	GCWGC	4 cut(s)	467, 548, 665, 1519
Tsp45I	GTSAC	3 cut(s)	741, 828, 1434
TspDTI	ATGAA	8 cut(s)	213, 345, 363, 878, 1122, 1200, 1307, 1346
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	409
XapI	RAATTY	3 cut(s)	631, 982, 1159
XceI	RCATGY	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	1044
XspI	CTAG	2 cut(s)	1523, 1565
ZrmI	AGTACT	1 cut(s)	1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.