Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001074.1

Orthogroup ID

OG0001820

Physical Location & Seq

Genomic Coordinates Forward (+)

140115 .. 140669

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001074.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgttcaacgggatgaatatgatgcatccagaattgatgaaactcgctcaggaacagatgagtcggatgttgccgaccgatttcgccaggatgcaacaacaggtctcttcttcttcttcaaagtttccatattgttttcctgatcccgtttcgatgatggctaatccagagttgatgaagatggcatcagagagcatgaagaacatgaggcctgaagatttgaaaatggctgcagagaaattgaaacacacacgcccggaagagcaatggcgagcgcgtattgtccttcctcttttgctacgcatatttgaaatgttacttatgagtgcaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046967 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2

Protein Analysis

111

Amino Acids

13.0

Weight (kDa)

8.89

Isoelectric Point (pI)

67.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21990
fragaria_vesca	FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800
malus_domestica	MD03G1160600.v1.1
prunus_persica	Prupe.6G148800_v2.0.a1 Prupe.6G148800_v2.0.a1
pyrus_communis	pycom03g11290
rosa_chinensis	RchiOBHm_Chr1g0344561 RchiOBHm_Chr1g0344771 RchiOBHm_Chr1g0344781 RchiOBHm_Chr1g0344791 RchiOBHm_Chr5g0049211
rosa_laevigata	RLG00000028875 RLG00000028876 RLG00000028883 RLG00000028888 RLG00000034600
rosa_multiflora	Rmu_sc0000141.1_g000005 Rmu_sc0001074.1_g000028 Rmu_sc0004949.1_g000001 Rmu_sc0007444.1_g000001 Rmu_sc0013714.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032520 Rroxscaffold_4G00309640
rosa_rugosa	Rorug01G0174800 Rorug05G0245800 Rorug05G0245900
rosa_samantha	Rh1AG191700 Rh1BG157800 Rh1BG157900 Rh1BG158800 Rh1CG176700 Rh1DG189200 Rh1DG189300 Rh1DG189700 Rh5AG323600 Rh5BG334100 Rh5CG359100 Rh5DG346200
rosa_wichuraiana	Rw1G015740 Rw5G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	277
AclWI	GGATC	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	234
AgsI	TTSAA	5 cut(s)	7, 120, 223, 244, 311
AjnI	CCWGG	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	151, 175
BciT130I	CCWGG	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	109
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	88, 257
BmrFI	CCNGG	2 cut(s)	88, 257
BmsI	GCATC	4 cut(s)	12, 34, 81, 194
Bpu10I	CCTNAGC	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	88
BseGI	GGATG	4 cut(s)	18, 25, 72, 96
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	277
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	211
BsiEI	CGRYCG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	211
Bso31I	GGTCTC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	142
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	272
BssMI	GATC	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	88
Bst6I	CTCTTC	2 cut(s)	112, 255
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	4 cut(s)	18, 25, 72, 96
BstFNI	CGCG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	142
BstMCI	CGRYCG	1 cut(s)	78
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	86, 255
BstSFI	CTRYAG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	211
BtsCI	GGATG	4 cut(s)	18, 25, 72, 96
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	277
CviAII	CATG	2 cut(s)	196, 205
CviJI	RGCY	3 cut(s)	161, 211, 230
CviKI_1	RGCY	3 cut(s)	161, 211, 230
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	112, 255
EarI	CTCTTC	2 cut(s)	112, 255
Eco147I	AGGCCT	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	86
EcoT22I	ATGCAT	1 cut(s)	27
FaeI	CATG	2 cut(s)	199, 208
FaiI	YATR	7 cut(s)	20, 130, 197, 206, 305, 323, 334
FatI	CATG	2 cut(s)	195, 204
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	4 cut(s)	12, 25, 79, 103
Fsp4HI	GCNGC	1 cut(s)	231
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	257
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	199, 208
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	66, 190
Hpy188III	TCNNGA	4 cut(s)	29, 50, 140, 167
HpyAV	CCTTC	1 cut(s)	296
HpyCH4V	TGCA	4 cut(s)	25, 94, 233, 329
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	199, 208
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	142
LguI	GCTCTTC	1 cut(s)	255
LpnPI	CCDG	9 cut(s)	35, 42, 73, 86, 100, 153, 180, 225, 270
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	4 cut(s)	12, 34, 81, 194
MaeIII	GTNAC	1 cut(s)	315
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	8 cut(s)	99, 102, 105, 108, 190, 211, 227, 272
MluCI	AATT	2 cut(s)	32, 239
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	2 cut(s)	201, 300
Mph1103I	ATGCAT	1 cut(s)	27
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	88, 257
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	277
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	199, 208
NsiI	ATGCAT	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PstI	CTGCAG	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	255
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	88, 257
SetI	ASST	1 cut(s)	105
SfaNI	GCATC	4 cut(s)	12, 34, 81, 194
SfcI	CTRYAG	1 cut(s)	231
Sse9I	AATT	2 cut(s)	32, 239
SseBI	AGGCCT	1 cut(s)	211
StuI	AGGCCT	1 cut(s)	211
StyD4I	CCNGG	2 cut(s)	86, 255
TaqI	TCGA	1 cut(s)	152
TaqII	GACCGA	1 cut(s)	92
TasI	AATT	2 cut(s)	32, 239
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	4 cut(s)	29, 53, 191, 212
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.