Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001820

Physical Location & Seq

Genomic Coordinates Forward (+)

31404713 .. 31406143

Gene Structure 1431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGTTCAACGGGATAAATATGATGGACCCAGAATTGATGAAACTTGCTCAGGAGCAGATGAGTAGGATGTCACCGGTTGATTTCGCCAGGATTCAACAACAGATGATAGCTAATCCAGAATTGATGAAGATGGCATCAGAGAGCATGAAGAATATGAGGCCTGAAGATTTGAAACTGGCTGCAGAGCAACTGAAACAGTCACGTCCAGAAGAGATGGCTGAGATTGGGGAGAAGATGGCTAGTGCATCGCCTGAAGAGATAGCAGCCATGCATGCACGTGTTGATGCCCAAGTCAGTTACAAACTGAATGCATCTCAGATGCTCAAGAATCAGGGAAACGCATTTCACAGCCAGGGAAAGTTCAACGATGCGTTGCAGAAATACGTACTTGCAAAGACAAACTTGAATGGCCTTCCATCCTCTAAAGGAAGATCACTACTGATGGCATGCTCACTCAACTTAATGTCATGTTACTTGAAAACAAGGCAGTATGACGAATGTATAAAAGAAGGTTCTGAGGTACTGGCATTTGATGCACAGAATGTGAAAGCTCTCTATCGGAGGGGTCAAGCATATAGAGAATTGGGTCAATTGGAAGATGCTGTCTCTGACCTAAGCATGGCACATGAAGTTTCCCCTGATGATGAAACTATTGCAGATGTTCTAAGGCATGCTAAGGAAAAATTGGGTACAGAGGGCAGTGTGTCTGCACCAAGAAGACTGGTAATTGAAGAAATAACTGAAGAAGTTGAGACTGTCTCTTCTGCCAACCATAATAACTCATCTACAGAGTATTCTATGGCACAACCACAGGAAACCAGAGACATTCCTAAGACTCAAATTGCAGCTGACTCCGAGGTTCTGTCAAACAATTCAGAGCTTTTGCAGGCTCTAAAAACTGACCCAGAAACTCTCAGAGACTCATCTCCAACACCAGCATCATTCTATGCTAACAGACAAGGTTCATCGAAGTATTGCCGTGAAAACTCTGCTGCGAATGTGGCTCATGATGAAGGTGAAAGTAGTTCTCATGGAATATTGCGAAATGTGAGAAGTACTCCTCAGTCGAGCTTCCCTGCCTCTGCTGTTGATTTCCAAGAACAAATGAGAAACCAAATGAAAGATCCTGCAATGCGGAAGATGTTGTCATCAATGATGAAGAATATGAGTCCAGACATGTTGGCAAACATGAGTGAGCAATTTGGTTTGAATCTTTCTCAGGAAGATGCGGAAAAAGCTCATCAAGCAATGTCTTCTTTGTCACCAGAGTCCTTGGACAACATGATGCAATGGATGGATAGGATTCAAAGAGGAGTTGAAGCTGCAAGGAAGACAAAGAATTGGCTGCTGGGGAAATCCAGTTTGATTTTGGCAATGGTAATGCTCATTCTAGCAGTAATCCTTCATTGCTTGGGATACATTGGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046967 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2

Protein Analysis

476

Amino Acids

52.93

Weight (kDa)

5.41

Isoelectric Point (pI)

63.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	182 - 215	1.7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21990
fragaria_vesca	FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800
malus_domestica	MD03G1160600.v1.1
prunus_persica	Prupe.6G148800_v2.0.a1 Prupe.6G148800_v2.0.a1
pyrus_communis	pycom03g11290
rosa_chinensis	RchiOBHm_Chr1g0344561 RchiOBHm_Chr1g0344771 RchiOBHm_Chr1g0344781 RchiOBHm_Chr1g0344791 RchiOBHm_Chr5g0049211
rosa_laevigata	RLG00000028875 RLG00000028876 RLG00000028883 RLG00000028888 RLG00000034600
rosa_multiflora	Rmu_sc0000141.1_g000005 Rmu_sc0001074.1_g000028 Rmu_sc0004949.1_g000001 Rmu_sc0007444.1_g000001 Rmu_sc0013714.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032520 Rroxscaffold_4G00309640
rosa_rugosa	Rorug01G0174800 Rorug05G0245800 Rorug05G0245900
rosa_samantha	Rh1AG191700 Rh1BG157800 Rh1BG157900 Rh1BG158800 Rh1CG176700 Rh1DG189200 Rh1DG189300 Rh1DG189700 Rh5AG323600 Rh5BG334100 Rh5CG359100 Rh5DG346200
rosa_wichuraiana	Rw1G015740 Rw5G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	1135, 1229
AclWI	GGATC	1 cut(s)	1118
AcuI	CTGAAG	3 cut(s)	183, 273, 762
AcvI	CACGTG	1 cut(s)	278
AfaI	GTAC	4 cut(s)	387, 522, 691, 1057
AfiI	CCNNNNNNNGG	1 cut(s)	619
AflIII	ACRYGT	2 cut(s)	277, 1176
AgeI	ACCGGT	1 cut(s)	73
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	2 cut(s)	86, 351
AluBI	AGCT	7 cut(s)	110, 551, 848, 880, 1071, 1238, 1322
AluI	AGCT	7 cut(s)	110, 551, 848, 880, 1071, 1238, 1322
Alw26I	GTCTC	5 cut(s)	610, 746, 763, 816, 912
AlwI	GGATC	1 cut(s)	1118
AoxI	GGCC	2 cut(s)	158, 409
ApeKI	GCWGC	6 cut(s)	179, 263, 845, 992, 1322, 1345
AsiGI	ACCGGT	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	3 cut(s)	63, 1028, 1254
AvaII	GGWCC	1 cut(s)	25
BaeI	ACNNNNGTAYC	1 cut(s)	1408
BbrPI	CACGTG	1 cut(s)	278
BbsI	GAAGAC	3 cut(s)	724, 1245, 1337
BbvI	GCAGC	6 cut(s)	166, 275, 857, 979, 1309, 1332
BccI	CCATC	7 cut(s)	16, 124, 208, 229, 424, 436, 1288
BceAI	ACGGC	1 cut(s)	963
BciT130I	CCWGG	2 cut(s)	88, 353
BciVI	GTATCC	1 cut(s)	1409
BcoDI	GTCTC	5 cut(s)	610, 746, 763, 816, 912
BfaI	CTAG	2 cut(s)	240, 1391
BfmI	CTRYAG	2 cut(s)	180, 786
BfuI	GTATCC	1 cut(s)	1409
BisI	GCNGC	6 cut(s)	180, 264, 846, 993, 1323, 1346
BlsI	GCNGC	6 cut(s)	181, 265, 847, 994, 1324, 1347
BmcAI	AGTACT	1 cut(s)	1057
Bme1390I	CCNGG	2 cut(s)	88, 353
Bme18I	GGWCC	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	88, 353
BpiI	GAAGAC	3 cut(s)	724, 1245, 1337
BplI	GAGNNNNNCTC	4 cut(s)	743, 775, 1042, 1074
Bpu10I	CCTNAGC	3 cut(s)	48, 614, 675
BpuEI	CTTGAG	1 cut(s)	308
BsaAI	YACGTR	2 cut(s)	278, 385
BsaJI	CCNNGG	3 cut(s)	352, 855, 1272
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	4 cut(s)	180, 528, 726, 1359
Bse3DI	GCAATG	5 cut(s)	1137, 1254, 1295, 1380, 1405
BseBI	CCWGG	2 cut(s)	88, 353
BseDI	CCNNGG	3 cut(s)	352, 855, 1272
BseGI	GGATG	3 cut(s)	72, 416, 1299
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMI	GCAATG	5 cut(s)	1137, 1254, 1295, 1380, 1405
BseMII	CTCAG	7 cut(s)	62, 210, 329, 507, 928, 1076, 1232
BseNI	ACTGG	4 cut(s)	180, 528, 726, 1359
BseRI	GAGGAG	2 cut(s)	1050, 1326
BseXI	GCAGC	6 cut(s)	166, 275, 857, 979, 1309, 1332
BseYI	CCCAGC	1 cut(s)	1348
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	2 cut(s)	160, 411
BshTI	ACCGGT	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmAI	GTCTC	5 cut(s)	610, 746, 763, 816, 912
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	160, 411
Bsp143I	GATC	2 cut(s)	431, 1123
BspACI	CCGC	2 cut(s)	1135, 1229
BspANI	GGCC	2 cut(s)	160, 411
BspCNI	CTCAG	7 cut(s)	61, 211, 328, 508, 927, 1075, 1231
BspHI	TCATGA	1 cut(s)	1006
BspLI	GGNNCC	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	1118
BsrDI	GCAATG	5 cut(s)	1137, 1254, 1295, 1380, 1405
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	4 cut(s)	180, 528, 726, 1359
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	3 cut(s)	352, 855, 1272
BssMI	GATC	2 cut(s)	431, 1123
BssT1I	CCWWGG	1 cut(s)	1272
Bst2UI	CCWGG	2 cut(s)	88, 353
Bst4CI	ACNGT	2 cut(s)	198, 757
Bst6I	CTCTTC	3 cut(s)	204, 249, 766
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstBAI	YACGTR	2 cut(s)	278, 385
BstC8I	GCNNGC	4 cut(s)	273, 448, 672, 888
BstF5I	GGATG	3 cut(s)	72, 416, 1299
BstKTI	GATC	2 cut(s)	434, 1126
BstMAI	GTCTC	5 cut(s)	610, 746, 763, 816, 912
BstMBI	GATC	2 cut(s)	431, 1123
BstMWI	GCNNNNNNNGC	5 cut(s)	272, 533, 1001, 1235, 1244
BstNI	CCWGG	2 cut(s)	88, 353
BstNSI	RCATGY	4 cut(s)	275, 450, 674, 1180
BstSCI	CCNGG	2 cut(s)	86, 351
BstSFI	CTRYAG	2 cut(s)	180, 786
BstSNI	TACGTA	1 cut(s)	385
BstV1I	GCAGC	6 cut(s)	166, 275, 857, 979, 1309, 1332
BstV2I	GAAGAC	3 cut(s)	724, 1245, 1337
BstX2I	RGATCY	1 cut(s)	1123
BstYI	RGATCY	1 cut(s)	1123
BsuI	GTATCC	1 cut(s)	1409
BsuRI	GGCC	2 cut(s)	160, 411
BtgZI	GCGATG	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	203
BtsCI	GGATG	3 cut(s)	72, 416, 1299
BtsI	GCAGTG	1 cut(s)	706
BtsIMutI	CAGTG	1 cut(s)	706
Cac8I	GCNNGC	4 cut(s)	273, 448, 672, 888
CciI	TCATGA	1 cut(s)	1006
Cfr10I	RCCGGY	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	4 cut(s)	386, 521, 690, 1056
CspAI	ACCGGT	1 cut(s)	73
CviQI	GTAC	4 cut(s)	386, 521, 690, 1056
DpnI	GATC	2 cut(s)	433, 1125
DpnII	GATC	2 cut(s)	431, 1123
Eam1104I	CTCTTC	3 cut(s)	204, 249, 766
EarI	CTCTTC	3 cut(s)	204, 249, 766
Eco105I	TACGTA	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	1272
Eco147I	AGGCCT	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	25
Eco57I	CTGAAG	3 cut(s)	183, 273, 762
Eco72I	CACGTG	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	86, 351
EcoT14I	CCWWGG	1 cut(s)	1272
EcoT22I	ATGCAT	2 cut(s)	273, 313
ErhI	CCWWGG	1 cut(s)	1272
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
Fnu4HI	GCNGC	6 cut(s)	180, 264, 846, 993, 1323, 1346
FokI	GGATG	3 cut(s)	79, 403, 1306
Fsp4HI	GCNGC	6 cut(s)	180, 264, 846, 993, 1323, 1346
FspBI	CTAG	2 cut(s)	240, 1391
GluI	GCNGC	6 cut(s)	180, 264, 846, 993, 1323, 1346
GsaI	CCCAGC	1 cut(s)	1352
HaeIII	GGCC	2 cut(s)	160, 411
HapII	CCGG	1 cut(s)	74
HinfI	GANTC	9 cut(s)	91, 328, 835, 851, 920, 1168, 1210, 1268, 1303
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	3 cut(s)	63, 1028, 1254
Hpy188I	TCNGA	8 cut(s)	139, 318, 517, 561, 610, 856, 877, 917
Hpy188III	TCNNGA	7 cut(s)	50, 116, 206, 325, 1007, 1172, 1220
HpyAV	CCTTC	4 cut(s)	422, 503, 1007, 1412
HpyCH4III	ACNGT	2 cut(s)	198, 757
HpyCH4IV	ACGT	3 cut(s)	202, 277, 384
HpyF10VI	GCNNNNNNNGC	5 cut(s)	272, 533, 1001, 1235, 1244
HpySE526I	ACGT	3 cut(s)	202, 277, 384
Kzo9I	GATC	2 cut(s)	431, 1123
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	6 cut(s)	166, 275, 857, 979, 1309, 1332
MaeI	CTAG	2 cut(s)	240, 1391
MaeII	ACGT	3 cut(s)	202, 277, 384
MaeIII	GTNAC	5 cut(s)	69, 198, 296, 470, 1260
MalI	GATC	2 cut(s)	433, 1125
MboI	GATC	2 cut(s)	431, 1123
MfeI	CAATTG	1 cut(s)	590
MflI	RGATCY	1 cut(s)	1123
MlyI	GAGTC	5 cut(s)	829, 845, 914, 1177, 1277
MmeI	TCCRAC	1 cut(s)	953
MnlI	CCTC	9 cut(s)	150, 430, 511, 555, 688, 850, 1071, 1090, 1304
Mph1103I	ATGCAT	2 cut(s)	273, 313
MseI	TTAA	1 cut(s)	461
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	848
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	88, 353
MunI	CAATTG	1 cut(s)	590
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	2 cut(s)	88, 353
MwoI	GCNNNNNNNGC	5 cut(s)	272, 533, 1001, 1235, 1244
NdeII	GATC	2 cut(s)	431, 1123
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	3 cut(s)	69, 198, 1260
NsiI	ATGCAT	2 cut(s)	273, 313
NspI	RCATGY	4 cut(s)	275, 450, 674, 1180
PaeI	GCATGC	3 cut(s)	275, 450, 674
PagI	TCATGA	1 cut(s)	1006
PceI	AGGCCT	1 cut(s)	160
PciI	ACATGT	1 cut(s)	1176
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	4 cut(s)	91, 328, 1210, 1303
PinAI	ACCGGT	1 cut(s)	73
PkrI	GCNGC	6 cut(s)	181, 265, 847, 994, 1324, 1347
PleI	GAGTC	5 cut(s)	829, 845, 914, 1176, 1276
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
PpsI	GAGTC	5 cut(s)	829, 845, 914, 1176, 1276
Ppu21I	YACGTR	2 cut(s)	278, 385
PscI	ACATGT	1 cut(s)	1176
Psp6I	CCWGG	2 cut(s)	86, 351
PspCI	CACGTG	1 cut(s)	278
PspFI	CCCAGC	1 cut(s)	1348
PspGI	CCWGG	2 cut(s)	86, 351
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	1123
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	4 cut(s)	387, 522, 691, 1057
RsaNI	GTAC	4 cut(s)	386, 521, 690, 1056
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	6 cut(s)	180, 264, 846, 993, 1323, 1346
Sau3AI	GATC	2 cut(s)	431, 1123
Sau96I	GGNCC	1 cut(s)	25
ScaI	AGTACT	1 cut(s)	1057
SchI	GAGTC	5 cut(s)	829, 845, 914, 1177, 1277
ScrFI	CCNGG	2 cut(s)	88, 353
SfcI	CTRYAG	2 cut(s)	180, 786
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SnaBI	TACGTA	1 cut(s)	385
SphI	GCATGC	3 cut(s)	275, 450, 674
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	1135, 1229
SspI	AATATT	1 cut(s)	1038
SspMI	CTAG	2 cut(s)	240, 1391
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	86, 351
StyI	CCWWGG	1 cut(s)	1272
TaaI	ACNGT	2 cut(s)	198, 757
TaiI	ACGT	3 cut(s)	205, 280, 387
TaqI	TCGA	2 cut(s)	968, 1067
TatI	WGTACW	1 cut(s)	1055
TfiI	GAWTC	4 cut(s)	91, 328, 1210, 1303
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	3 cut(s)	69, 198, 1260
TseI	GCWGC	6 cut(s)	179, 263, 845, 992, 1322, 1345
Tsp45I	GTSAC	3 cut(s)	69, 198, 1260
TspRI	CASTG	1 cut(s)	706
VpaK11BI	GGWCC	1 cut(s)	25
XceI	RCATGY	4 cut(s)	275, 450, 674, 1180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1366
XspI	CTAG	2 cut(s)	240, 1391
ZrmI	AGTACT	1 cut(s)	1057
Zsp2I	ATGCAT	2 cut(s)	273, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.