Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001820

Physical Location & Seq

Genomic Coordinates Reverse (-)

37817443 .. 37818477

Gene Structure 1035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG189200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATCCGCCCCTGCTTCCATCCTCTAAAGGAAGATCACTACTGATGGCGTGCTCACTCAACTTAATGTCATGTTACTTGAAAACAAGGCAGTATGACGAATGTATAAAAGAAGGTTCTGAGGTACTGGCATTTGATGCACAGAATGTGAAAGCTCTCTATCGGAGGGGTCAAGCATATAGCGAATTGGGTCAATTGGAAGATGCTGTCTCTGACCTGAGCATGGCACATGAAGTTTCCCCTGATGATGAAACTATTGCAGATGTTCTAAGGGATGCTAAGGAAAAATTGGGTACAGAGGGCAGTGTGTCTGCACCAAGAAGACTGGTAATTGAAGAAATAACTGAAGAAGTTGAGACTGTCTCTTCTGCCAACCATAATAGCTCATCTACAGAGTATTCTATGGCACAACCACAGGAAACCAGAGACATTCCTAAGACTCAAATTGCAGCTGACTCTGAGGTTCTGTCAAACAATTCAGAGCTTTTTCAGGCTCTAAAAAATGACCCAGCAACTCTCAGAGACTCATCTCCAACACCAACATCATTCTATGCTAACAGACAAGGTTCATCGAAGTATTGCCGTGAAAACTCTGCTGTGAATGTGGCTCATGATGAAGGTGAAAGTAGTTCTCATGGAATATTGCCAAATGTGAGAAGTACTCCTCAGTCGAGCTTCCCTGCCTCTGCTGTTGATTTCCAAGAACAAATGAGAAACCAAATGAAAGATCCTGCAATGCGGAAGATGTTGTCATCAATGATGAAGAATATGAGTCCAGACATGTTGGCAAACATGAGTGAGCAATTTGGTTTGAATCTTTCTCAGGAAGATGCGGAAAAAGCTCATCAAGCAATGTCTTCTTTGTCACCAGAGTCCTTGGACAACATGATGCAATGGATGGATAGGATTCAAAGAGGAGTGGAAGCTGCAAGGAAGACAAAGAATTGGCTGCTGGGGAAATCCAGTTTGATTTTGGCAATAGTAATGCTCATTCTAGCAATAATCCTTCATTGCTTGGGATACATTGGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046967 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2

Protein Analysis

344

Amino Acids

37.94

Weight (kDa)

4.96

Isoelectric Point (pI)

63.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	50 - 83	1.9e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21990
fragaria_vesca	FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800
malus_domestica	MD03G1160600.v1.1
prunus_persica	Prupe.6G148800_v2.0.a1 Prupe.6G148800_v2.0.a1
pyrus_communis	pycom03g11290
rosa_chinensis	RchiOBHm_Chr1g0344561 RchiOBHm_Chr1g0344771 RchiOBHm_Chr1g0344781 RchiOBHm_Chr1g0344791 RchiOBHm_Chr5g0049211
rosa_laevigata	RLG00000028875 RLG00000028876 RLG00000028883 RLG00000028888 RLG00000034600
rosa_multiflora	Rmu_sc0000141.1_g000005 Rmu_sc0001074.1_g000028 Rmu_sc0004949.1_g000001 Rmu_sc0007444.1_g000001 Rmu_sc0013714.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032520 Rroxscaffold_4G00309640
rosa_rugosa	Rorug01G0174800 Rorug05G0245800 Rorug05G0245900
rosa_samantha	Rh1AG191700 Rh1BG157800 Rh1BG157900 Rh1BG158800 Rh1CG176700 Rh1DG189200 Rh1DG189300 Rh1DG189700 Rh5AG323600 Rh5BG334100 Rh5CG359100 Rh5DG346200
rosa_wichuraiana	Rw1G015740 Rw5G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	8, 739, 833
AclWI	GGATC	2 cut(s)	12, 722
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	3 cut(s)	126, 295, 661
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	780
AgsI	TTSAA	4 cut(s)	82, 335, 814, 911
AluBI	AGCT	7 cut(s)	155, 384, 452, 484, 675, 842, 926
AluI	AGCT	7 cut(s)	155, 384, 452, 484, 675, 842, 926
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	5 cut(s)	214, 350, 367, 420, 516
AlwI	GGATC	2 cut(s)	12, 722
ApeKI	GCWGC	3 cut(s)	449, 926, 949
AsuHPI	GGTGA	2 cut(s)	632, 858
BaeI	ACNNNNGTAYC	1 cut(s)	1012
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	3 cut(s)	328, 849, 941
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	461, 913, 936
BccI	CCATC	3 cut(s)	28, 40, 892
BceAI	ACGGC	1 cut(s)	567
BciVI	GTATCC	1 cut(s)	1013
BcoDI	GTCTC	5 cut(s)	214, 350, 367, 420, 516
BfaI	CTAG	1 cut(s)	995
BfmI	CTRYAG	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	1013
BisI	GCNGC	3 cut(s)	450, 927, 950
BlsI	GCNGC	3 cut(s)	451, 928, 951
BmcAI	AGTACT	1 cut(s)	661
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	5 cut(s)	127, 193, 265, 820, 879
BpiI	GAAGAC	3 cut(s)	328, 849, 941
BplI	GAGNNNNNCTC	4 cut(s)	347, 379, 646, 678
Bpu10I	CCTNAGC	2 cut(s)	218, 279
BsaJI	CCNNGG	1 cut(s)	876
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	3 cut(s)	132, 330, 963
Bse3DI	GCAATG	4 cut(s)	741, 858, 899, 1009
BseDI	CCNNGG	1 cut(s)	876
BseGI	GGATG	3 cut(s)	20, 280, 903
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	4 cut(s)	741, 858, 899, 1009
BseMII	CTCAG	6 cut(s)	111, 209, 450, 532, 680, 836
BseNI	ACTGG	3 cut(s)	132, 330, 963
BseRI	GAGGAG	2 cut(s)	654, 930
BseXI	GCAGC	3 cut(s)	461, 913, 936
BseYI	CCCAGC	2 cut(s)	508, 952
BsgI	GTGCAG	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	5 cut(s)	214, 350, 367, 420, 516
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	4, 35, 727
BspACI	CCGC	3 cut(s)	8, 739, 833
BspCNI	CTCAG	6 cut(s)	112, 210, 451, 531, 679, 835
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	12, 722
BsrDI	GCAATG	4 cut(s)	741, 858, 899, 1009
BsrI	ACTGG	3 cut(s)	132, 330, 963
BssECI	CCNNGG	1 cut(s)	876
BssMI	GATC	3 cut(s)	4, 35, 727
BssT1I	CCWWGG	1 cut(s)	876
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	370
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	9 cut(s)	120, 218, 269, 279, 435, 459, 518, 666, 822
BstF5I	GGATG	3 cut(s)	20, 280, 903
BstKTI	GATC	3 cut(s)	7, 38, 730
BstMAI	GTCTC	5 cut(s)	214, 350, 367, 420, 516
BstMBI	GATC	3 cut(s)	4, 35, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 839, 848
BstNSI	RCATGY	1 cut(s)	784
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	3 cut(s)	461, 913, 936
BstV2I	GAAGAC	3 cut(s)	328, 849, 941
BstX2I	RGATCY	2 cut(s)	4, 727
BstYI	RGATCY	2 cut(s)	4, 727
BsuI	GTATCC	1 cut(s)	1013
BtsCI	GGATG	3 cut(s)	20, 280, 903
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	52
CciI	TCATGA	1 cut(s)	610
Csp6I	GTAC	3 cut(s)	125, 294, 660
CviAII	CATG	8 cut(s)	72, 223, 230, 611, 635, 781, 793, 886
CviQI	GTAC	3 cut(s)	125, 294, 660
DdeI	CTNAG	9 cut(s)	120, 218, 269, 279, 435, 459, 518, 666, 822
DpnI	GATC	3 cut(s)	6, 37, 729
DpnII	GATC	3 cut(s)	4, 35, 727
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	876
Eco57I	CTGAAG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	876
ErhI	CCWWGG	1 cut(s)	876
FaeI	CATG	8 cut(s)	75, 226, 233, 614, 638, 784, 796, 889
FatI	CATG	8 cut(s)	71, 222, 229, 610, 634, 780, 792, 885
Fnu4HI	GCNGC	3 cut(s)	450, 927, 950
FokI	GGATG	3 cut(s)	7, 287, 910
Fsp4HI	GCNGC	3 cut(s)	450, 927, 950
FspBI	CTAG	1 cut(s)	995
GluI	GCNGC	3 cut(s)	450, 927, 950
GsaI	CCCAGC	2 cut(s)	512, 956
Hin1II	CATG	8 cut(s)	75, 226, 233, 614, 638, 784, 796, 889
HinfI	GANTC	7 cut(s)	439, 455, 524, 772, 814, 872, 907
HphI	GGTGA	2 cut(s)	632, 858
Hpy188I	TCNGA	6 cut(s)	121, 165, 214, 460, 481, 521
Hpy188III	TCNNGA	3 cut(s)	611, 776, 824
HpyAV	CCTTC	3 cut(s)	107, 611, 1016
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	7 cut(s)	140, 260, 314, 449, 734, 892, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 839, 848
HpyF3I	CTNAG	9 cut(s)	120, 218, 269, 279, 435, 459, 518, 666, 822
Hsp92II	CATG	8 cut(s)	75, 226, 233, 614, 638, 784, 796, 889
Kzo9I	GATC	3 cut(s)	4, 35, 727
Lsp1109I	GCAGC	3 cut(s)	461, 913, 936
LweI	GCATC	5 cut(s)	127, 193, 265, 820, 879
MaeI	CTAG	1 cut(s)	995
MaeIII	GTNAC	2 cut(s)	74, 864
MalI	GATC	3 cut(s)	6, 37, 729
MboI	GATC	3 cut(s)	4, 35, 727
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	2 cut(s)	4, 727
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	8 cut(s)	185, 194, 287, 330, 444, 475, 803, 943
MlyI	GAGTC	5 cut(s)	433, 449, 518, 781, 881
MmeI	TCCRAC	1 cut(s)	557
MnlI	CCTC	8 cut(s)	34, 115, 159, 292, 454, 675, 694, 908
MseI	TTAA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	452
MunI	CAATTG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	137, 839, 848
NdeII	GATC	3 cut(s)	4, 35, 727
NlaIII	CATG	8 cut(s)	75, 226, 233, 614, 638, 784, 796, 889
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	864
NspI	RCATGY	1 cut(s)	784
PagI	TCATGA	1 cut(s)	610
PciI	ACATGT	1 cut(s)	780
PfeI	GAWTC	2 cut(s)	814, 907
PkrI	GCNGC	3 cut(s)	451, 928, 951
PleI	GAGTC	5 cut(s)	433, 449, 518, 780, 880
PpsI	GAGTC	5 cut(s)	433, 449, 518, 780, 880
PscI	ACATGT	1 cut(s)	780
PspFI	CCCAGC	2 cut(s)	508, 952
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	4, 727
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	3 cut(s)	126, 295, 661
RsaNI	GTAC	3 cut(s)	125, 294, 660
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	3 cut(s)	450, 927, 950
Sau3AI	GATC	3 cut(s)	4, 35, 727
ScaI	AGTACT	1 cut(s)	661
SchI	GAGTC	5 cut(s)	433, 449, 518, 781, 881
SduI	GDGCHC	1 cut(s)	56
SfaNI	GCATC	5 cut(s)	127, 193, 265, 820, 879
SfcI	CTRYAG	1 cut(s)	390
Sse9I	AATT	8 cut(s)	185, 194, 287, 330, 444, 475, 803, 943
SsiI	CCGC	3 cut(s)	8, 739, 833
SspI	AATATT	1 cut(s)	642
SspMI	CTAG	1 cut(s)	995
StyI	CCWWGG	1 cut(s)	876
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	2 cut(s)	572, 671
TasI	AATT	8 cut(s)	185, 194, 287, 330, 444, 475, 803, 943
TatI	WGTACW	1 cut(s)	659
TfiI	GAWTC	2 cut(s)	814, 907
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	864
TseI	GCWGC	3 cut(s)	449, 926, 949
Tsp45I	GTSAC	1 cut(s)	864
TspDTI	ATGAA	7 cut(s)	246, 264, 558, 630, 737, 776, 998
TspRI	CASTG	1 cut(s)	310
XceI	RCATGY	1 cut(s)	784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	970
XspI	CTAG	1 cut(s)	995
ZrmI	AGTACT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.