Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001820

Physical Location & Seq

Genomic Coordinates Forward (+)

29573441 .. 29573856

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCATCAGAGAGCATGAAGAACATGAGGCCTGAAGATTTGAAACTGGCTGCAGAGCAATTGAAACACACACATCCAGAAGAGATAGCAGACATGCATGCACGTGTTGACGCCGAAGTCAGTTACAAATTGAATGCATCTCAGATGCTCAAGAATCAAGGAAATGCACTTCACAGCCAGGGAAAGTTCAACGATGCCTTGCAGAAGAAGATCACTGCTGATGGCATGCTCACTCAACCTAATGTCAAAACAAGGCAGTATGAAGCATATAAAGAATTGGGTCAATTGGAAGATGCTGTCTCTGACCTGAGCATGGCACATGAAGTTTCCCCTGAGGCCCTGACGATGAAACTATTACAAATGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006810 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0012505 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0046967 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2

Protein Analysis

123

Amino Acids

13.73

Weight (kDa)

5.69

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21990
fragaria_vesca	FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800 FvH4_3g26800
malus_domestica	MD03G1160600.v1.1
prunus_persica	Prupe.6G148800_v2.0.a1 Prupe.6G148800_v2.0.a1
pyrus_communis	pycom03g11290
rosa_chinensis	RchiOBHm_Chr1g0344561 RchiOBHm_Chr1g0344771 RchiOBHm_Chr1g0344781 RchiOBHm_Chr1g0344791 RchiOBHm_Chr5g0049211
rosa_laevigata	RLG00000028875 RLG00000028876 RLG00000028883 RLG00000028888 RLG00000034600
rosa_multiflora	Rmu_sc0000141.1_g000005 Rmu_sc0001074.1_g000028 Rmu_sc0004949.1_g000001 Rmu_sc0007444.1_g000001 Rmu_sc0013714.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032520 Rroxscaffold_4G00309640
rosa_rugosa	Rorug01G0174800 Rorug05G0245800 Rorug05G0245900
rosa_samantha	Rh1AG191700 Rh1BG157800 Rh1BG157900 Rh1BG158800 Rh1CG176700 Rh1DG189200 Rh1DG189300 Rh1DG189700 Rh5AG323600 Rh5BG334100 Rh5CG359100 Rh5DG346200
rosa_wichuraiana	Rw1G015740 Rw5G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	54
AcvI	CACGTG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	313
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	43, 64, 133, 190
AjnI	CCWGG	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	304
AoxI	GGCC	2 cut(s)	29, 336
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	337
AxyI	CCTNAGG	1 cut(s)	333
BbrPI	CACGTG	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	304
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	5 cut(s)	14, 135, 146, 184, 283
Bpu10I	CCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	3 cut(s)	155, 299, 324
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	2 cut(s)	31, 338
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	31, 338
Bsp143I	GATC	1 cut(s)	210
BspANI	GGCC	2 cut(s)	31, 338
BspCNI	CTCAG	3 cut(s)	154, 300, 325
BspMAI	CTGCAG	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	1 cut(s)	210
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	99, 227
BstDEI	CTNAG	3 cut(s)	141, 308, 333
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	210
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	3 cut(s)	97, 101, 229
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	37
Bsu36I	CCTNAGG	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	31, 338
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	99, 227
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	1 cut(s)	119
CviAII	CATG	7 cut(s)	16, 25, 94, 98, 226, 313, 320
CviJI	RGCY	4 cut(s)	31, 50, 177, 338
CviKI_1	RGCY	4 cut(s)	31, 50, 177, 338
DdeI	CTNAG	3 cut(s)	141, 308, 333
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	54
Eco72I	CACGTG	1 cut(s)	104
Eco81I	CCTNAGG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	177
EcoT22I	ATGCAT	2 cut(s)	99, 139
FaeI	CATG	7 cut(s)	19, 28, 97, 101, 229, 316, 323
FatI	CATG	7 cut(s)	15, 24, 93, 97, 225, 312, 319
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	31, 338
HgaI	GACGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	7 cut(s)	19, 28, 97, 101, 229, 316, 323
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	10, 144, 304
Hpy188III	TCNNGA	2 cut(s)	77, 151
Hpy8I	GTNNAC	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	6 cut(s)	53, 97, 101, 137, 167, 202
HpyF3I	CTNAG	3 cut(s)	141, 308, 333
HpySE526I	ACGT	1 cut(s)	103
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	7 cut(s)	19, 28, 97, 101, 229, 316, 323
Kzo9I	GATC	1 cut(s)	210
LpnPI	CCDG	8 cut(s)	32, 45, 90, 164, 191, 320, 345, 353
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	5 cut(s)	14, 135, 146, 184, 283
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	6 cut(s)	31, 47, 92, 217, 220, 302
MfeI	CAATTG	2 cut(s)	59, 284
MluCI	AATT	4 cut(s)	59, 128, 275, 284
MnlI	CCTC	2 cut(s)	21, 328
Mph1103I	ATGCAT	2 cut(s)	99, 139
MslI	CAYNNNNRTG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	179
MunI	CAATTG	2 cut(s)	59, 284
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	179
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	7 cut(s)	19, 28, 97, 101, 229, 316, 323
NsiI	ATGCAT	2 cut(s)	99, 139
NspI	RCATGY	3 cut(s)	97, 101, 229
PaeI	GCATGC	2 cut(s)	101, 229
PceI	AGGCCT	1 cut(s)	31
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	52
PmaCI	CACGTG	1 cut(s)	104
PmlI	CACGTG	1 cut(s)	104
Ppu21I	YACGTR	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	102
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	3 cut(s)	106, 241, 309
SfaNI	GCATC	5 cut(s)	14, 135, 146, 184, 283
SfcI	CTRYAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SphI	GCATGC	2 cut(s)	101, 229
Sse9I	AATT	4 cut(s)	59, 128, 275, 284
SseBI	AGGCCT	1 cut(s)	31
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	177
TaiI	ACGT	1 cut(s)	106
TasI	AATT	4 cut(s)	59, 128, 275, 284
TfiI	GAWTC	1 cut(s)	154
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	4 cut(s)	32, 276, 336, 362
TspRI	CASTG	1 cut(s)	220
XceI	RCATGY	3 cut(s)	97, 101, 229
Zsp2I	ATGCAT	2 cut(s)	99, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.