MD04G1011100.v1.1

DCD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0003630
Physical Location & Seq
Forward (+)
1221782 .. 1222018
237 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1011100.v1.1.491

Sequence Viewer

Length: 237 bp
ATGGAGTCAGACGAGGAGGAGGATTGTTTTCGCGGGTTATATCCGGAGTATGGTGCAATTTTCATGTCAAGCAGTGCAACGATAGATGAGTGTTTTGAACGGAGACTGTTTGGCCTTCCATCTTCACAAGGCCAATTTGTGAAGCAGATTAAAACTGGAATGATTTTGTTTCTGTTTGAATTCGAGATGAGAGAACTTCATGGTGTTTTTTTCAAGCATGCTCTGATGGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dev_Cell_Death

Protein Analysis

79

Amino Acids

9.13

Weight (kDa)

4.88

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dev_Cell_Death PF10539 18 - 70 1.5e-19 Development and cell death domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 43
AciI CCGC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 3 cut(s) 98, 179, 214
Alw26I GTCTC 1 cut(s) 97
Aor13HI TCCGGA 1 cut(s) 43
AoxI GGCC 2 cut(s) 112, 130
ApoI RAATTY 1 cut(s) 179
BccI CCATC 2 cut(s) 127, 220
BcoDI GTCTC 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 160
BseAI TCCGGA 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 2 cut(s) 29, 32
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 2 cut(s) 114, 132
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 97
BsnI GGCC 2 cut(s) 114, 132
Bsp13I TCCGGA 1 cut(s) 43
BspACI CCGC 1 cut(s) 33
BspANI GGCC 2 cut(s) 114, 132
BspEI TCCGGA 1 cut(s) 43
BspFNI CGCG 1 cut(s) 33
BsrI ACTGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 219
BstFNI CGCG 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 221
BstUI CGCG 1 cut(s) 33
BsuRI GGCC 2 cut(s) 114, 132
BtsI GCAGTG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 219
CviAII CATG 3 cut(s) 64, 200, 218
CviJI RGCY 2 cut(s) 114, 132
CviKI_1 RGCY 2 cut(s) 114, 132
EcoRI GAATTC 1 cut(s) 179
FaeI CATG 3 cut(s) 67, 203, 221
FaiI YATR 5 cut(s) 40, 51, 65, 201, 219
FatI CATG 3 cut(s) 63, 199, 217
FauI CCCGC 1 cut(s) 26
HaeIII GGCC 2 cut(s) 114, 132
HapII CCGG 1 cut(s) 44
Hin1II CATG 3 cut(s) 67, 203, 221
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 10, 225
Hpy188III TCNNGA 2 cut(s) 44, 184
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 56, 77
Hsp92II CATG 3 cut(s) 67, 203, 221
Kpn2I TCCGGA 1 cut(s) 43
LpnPI CCDG 2 cut(s) 57, 141
MboII GAAGA 1 cut(s) 114
MluCI AATT 3 cut(s) 57, 134, 179
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 7, 10, 13
MroI TCCGGA 1 cut(s) 43
MseI TTAA 1 cut(s) 150
MspI CCGG 1 cut(s) 44
MvnI CGCG 1 cut(s) 33
NlaIII CATG 3 cut(s) 67, 203, 221
NspI RCATGY 1 cut(s) 221
PaeI GCATGC 1 cut(s) 221
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 150
SchI GAGTC 1 cut(s) 14
SphI GCATGC 1 cut(s) 221
Sse9I AATT 3 cut(s) 57, 134, 179
SsiI CCGC 1 cut(s) 33
TaaI ACNGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 183
TasI AATT 3 cut(s) 57, 134, 179
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 52, 188
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 1 cut(s) 79
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.