Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003630

Physical Location & Seq

Genomic Coordinates Forward (+)

67558041 .. 67574558

Gene Structure 16518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG416600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGTTGCTCATAATAGCTTCAATAACTTTGAGGTTACATTATTACACTCGAGCTCATCTCATCTTGATTCTGTTGCACCAATTGATGCTCAAAGATTTCCAACATCCAAAATGGAAATTAAACTAGAAAGCTCTGGGGAATCTTTCACAATTGCAGATGAAAGTGGAAAAGATCCTGTGCATGATGTTGGCAGCCAAATTGTCGTTGTCCCTTCCAAAGATGGTATCCTTTATGCACAAGAAGACTCAGATCATAAGGAGCCTATGGTGTTGTCTCGAGATGGTCATGAGCTCAGTCAGTCCACCATACTAGAGTCAGCTTTGCAACCTAGGACAAATGCTGCAACAAGAAATGGATTTTCTGAAATTGAAAATGACAAAGAAGAGTGGGAATATTACACGTGTTGCTTGAGGGGTTATGATCCTGAAAACAGCCCCAACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

148

Amino Acids

16.44

Weight (kDa)

4.56

Isoelectric Point (pI)

62.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140
fragaria_vesca	FvH4_3g12300 FvH4_3g12300 FvH4_3g12300
malus_domestica	MD04G1011100.v1.1 MD05G1251600.v1.1 MD10G1232100.v1.1
prunus_persica	Prupe.4G112100_v2.0.a1 Prupe.4G112100_v2.0.a1
pyrus_communis	pycom05g22930 pycom05g22940 pycom05g22950 pycom10g19540
rosa_chinensis	RchiOBHm_Chr4g0432061 RchiOBHm_Chr5g0020111
rosa_laevigata	RLG00000032500
rosa_multiflora	Rmu_sc0002012.1_g000001 Rmu_sc0004769.1_g000009 Rmu_sc0040673.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058090
rosa_rugosa	Rorug01G0143900.1 Rorug05G0057000 Rorug05G0057100 Rorug05G0057200
rosa_samantha	Rh5AG147100 Rh5BG146600 Rh5BG416600 Rh5CG158200 Rh5DG146100
rosa_wichuraiana	Rw5G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	167, 416
AcvI	CACGTG	1 cut(s)	402
AflIII	ACRYGT	2 cut(s)	399, 401
AgsI	TTSAA	2 cut(s)	22, 371
AluBI	AGCT	5 cut(s)	18, 54, 132, 292, 320
AluI	AGCT	5 cut(s)	18, 54, 132, 292, 320
Alw21I	GWGCWC	2 cut(s)	56, 294
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	2 cut(s)	167, 416
Ama87I	CYCGRG	2 cut(s)	49, 276
ApeKI	GCWGC	2 cut(s)	192, 341
AspA2I	CCTAGG	1 cut(s)	329
AvaI	CYCGRG	2 cut(s)	49, 276
AvrII	CCTAGG	1 cut(s)	329
BanII	GRGCYC	2 cut(s)	56, 294
BbrPI	CACGTG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	56, 294
BbvI	GCAGC	2 cut(s)	204, 328
BccI	CCATC	2 cut(s)	215, 275
BciVI	GTATCC	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	3 cut(s)	125, 311, 330
BfuI	GTATCC	1 cut(s)	236
BisI	GCNGC	2 cut(s)	193, 342
BlnI	CCTAGG	1 cut(s)	329
BlsI	GCNGC	2 cut(s)	194, 343
BmeT110I	CYCGRG	2 cut(s)	49, 276
BmiI	GGNNCC	1 cut(s)	261
BmsI	GCATC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
BpuEI	CTTGAG	1 cut(s)	430
BsaAI	YACGTR	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	261, 307
BseXI	GCAGC	2 cut(s)	204, 328
BsiHKAI	GWGCWC	2 cut(s)	56, 294
BsiHKCI	CYCGRG	2 cut(s)	49, 276
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	194
BsoBI	CYCGRG	2 cut(s)	49, 276
Bsp1286I	GDGCHC	2 cut(s)	56, 294
Bsp143I	GATC	3 cut(s)	172, 250, 421
BspCNI	CTCAG	2 cut(s)	260, 306
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	167, 416
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	3 cut(s)	172, 250, 421
BssT1I	CCWWGG	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	247, 293
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	3 cut(s)	175, 253, 424
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	3 cut(s)	172, 250, 421
BstV1I	GCAGC	2 cut(s)	204, 328
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuI	GTATCC	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	104
CciI	TCATGA	1 cut(s)	286
CviAII	CATG	2 cut(s)	182, 287
CviJI	RGCY	8 cut(s)	18, 54, 132, 195, 262, 292, 320, 435
CviKI_1	RGCY	8 cut(s)	18, 54, 132, 195, 262, 292, 320, 435
DdeI	CTNAG	2 cut(s)	247, 293
DpnI	GATC	3 cut(s)	174, 252, 423
DpnII	GATC	3 cut(s)	172, 250, 421
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Ecl136II	GAGCTC	2 cut(s)	54, 292
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	2 cut(s)	56, 294
Eco53kI	GAGCTC	2 cut(s)	54, 292
Eco72I	CACGTG	1 cut(s)	402
Eco88I	CYCGRG	2 cut(s)	49, 276
EcoICRI	GAGCTC	2 cut(s)	54, 292
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	2 cut(s)	56, 294
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	2 cut(s)	185, 290
FaiI	YATR	8 cut(s)	12, 183, 234, 255, 266, 288, 308, 420
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	181, 286
Fnu4HI	GCNGC	2 cut(s)	193, 342
FokI	GGATG	1 cut(s)	91
FriOI	GRGCYC	2 cut(s)	56, 294
Fsp4HI	GCNGC	2 cut(s)	193, 342
FspBI	CTAG	3 cut(s)	125, 311, 330
GluI	GCNGC	2 cut(s)	193, 342
Hin1II	CATG	2 cut(s)	185, 290
HinfI	GANTC	4 cut(s)	68, 140, 245, 314
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	2 cut(s)	250, 364
Hpy188III	TCNNGA	5 cut(s)	65, 276, 278, 287, 425
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	1 cut(s)	222
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	6 cut(s)	77, 155, 181, 236, 325, 344
HpyF3I	CTNAG	2 cut(s)	247, 293
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	2 cut(s)	185, 290
Kzo9I	GATC	3 cut(s)	172, 250, 421
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	3 cut(s)	120, 189, 438
Lsp1109I	GCAGC	2 cut(s)	204, 328
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	3 cut(s)	125, 311, 330
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	174, 252, 423
MboI	GATC	3 cut(s)	172, 250, 421
MboII	GAAGA	2 cut(s)	254, 395
MfeI	CAATTG	2 cut(s)	81, 150
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	2 cut(s)	56, 294
MluCI	AATT	5 cut(s)	81, 117, 150, 198, 366
MlyI	GAGTC	2 cut(s)	239, 323
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	2 cut(s)	25, 405
MseI	TTAA	2 cut(s)	120, 445
MunI	CAATTG	2 cut(s)	81, 150
NdeII	GATC	3 cut(s)	172, 250, 421
NlaIII	CATG	2 cut(s)	185, 290
NlaIV	GGNNCC	1 cut(s)	261
PaeR7I	CTCGAG	2 cut(s)	49, 276
PagI	TCATGA	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	68, 140
PkrI	GCNGC	2 cut(s)	194, 343
PleI	GAGTC	2 cut(s)	239, 322
PmaCI	CACGTG	1 cut(s)	402
PmlI	CACGTG	1 cut(s)	402
PpsI	GAGTC	2 cut(s)	239, 322
Ppu21I	YACGTR	1 cut(s)	402
Psp124BI	GAGCTC	2 cut(s)	56, 294
PspCI	CACGTG	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	261
PspXI	VCTCGAGB	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	172
SacI	GAGCTC	2 cut(s)	56, 294
SaqAI	TTAA	2 cut(s)	120, 445
SatI	GCNGC	2 cut(s)	193, 342
Sau3AI	GATC	3 cut(s)	172, 250, 421
SchI	GAGTC	2 cut(s)	239, 323
SduI	GDGCHC	2 cut(s)	56, 294
SetI	ASST	8 cut(s)	20, 36, 56, 134, 294, 322, 331, 404
SfaNI	GCATC	1 cut(s)	76
Sfr274I	CTCGAG	2 cut(s)	49, 276
SlaI	CTCGAG	2 cut(s)	49, 276
SmlI	CTYRAG	3 cut(s)	49, 276, 409
SmoI	CTYRAG	3 cut(s)	49, 276, 409
Sse9I	AATT	5 cut(s)	81, 117, 150, 198, 366
SspI	AATATT	1 cut(s)	395
SspMI	CTAG	3 cut(s)	125, 311, 330
SstI	GAGCTC	2 cut(s)	56, 294
StyI	CCWWGG	1 cut(s)	329
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	2 cut(s)	50, 277
TasI	AATT	5 cut(s)	81, 117, 150, 198, 366
TfiI	GAWTC	2 cut(s)	68, 140
Tru1I	TTAA	2 cut(s)	120, 445
Tru9I	TTAA	2 cut(s)	120, 445
TseI	GCWGC	2 cut(s)	192, 341
TspDTI	ATGAA	1 cut(s)	174
XhoI	CTCGAG	2 cut(s)	49, 276
XmaJI	CCTAGG	1 cut(s)	329
XspI	CTAG	3 cut(s)	125, 311, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.