Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040673.1

Orthogroup ID

OG0003630

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1004

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040673.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1003 bp

atgctgtgttcagatcttctggaaaacagaaatagtgtgttctctcgcctgagattcaataaccctggatggtgtctggaaaaccttggacatcttggccgcgaggaagatgttaaagacacgtcatcagtggatgaagtcatggaaatgttgagcgagagtcactacccctggatggagagtgaaaaatctataccgcacaagagacgacaaggtaatgtagagaagtctaggaatttgaagcagacagctgtgaagtctgagttggaaatgattccagagaaggcaaacacagcttctgcttcaccaactggagataaagatgatcaaagcagtaaaaagacaccgtttgtggacttcaagcggcggagtgatttgcgaaaagtcaatagcgatactaatggggaaagtgctggaagtgagggattgttaggtgggcagtgcaagagaaggaagttaatcaggcctaacttcagtgagaatgagccacgtgataacaaaagctataatagaagtcattttatgaattcaccaggatcagcccaagaatgccgtagttgtgaagatgctggtggcaagaaaaggaagctggctaagccaaatttcagagagaacgagtcatctcaggaatcatctgcgcaatgttctattggtgaagatgctggtggcaagagaaggaagctggctaggccaaattttagagaaaatgagtcatctttaatatcctcgccacaatgttctgttggtgaagatgctggtggaagttgcgggtcttttgttggaagccaagataagttgttattacaaggtgcagaatcttcacacgacaatgagaagatcgatactgaatgtgtttctaaatatgaaacagaaattatagtagaaagttctgggggttctcccaaaattggagatgatagtgtaaaggggtgtttgcatgcctatcctggaaattcttgtctgaacttacaagcatcagtcgatgaatcttctttttgtgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

334

Amino Acids

36.79

Weight (kDa)

5.73

Isoelectric Point (pI)

63.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140
fragaria_vesca	FvH4_3g12300 FvH4_3g12300 FvH4_3g12300
malus_domestica	MD04G1011100.v1.1 MD05G1251600.v1.1 MD10G1232100.v1.1
prunus_persica	Prupe.4G112100_v2.0.a1 Prupe.4G112100_v2.0.a1
pyrus_communis	pycom05g22930 pycom05g22940 pycom05g22950 pycom10g19540
rosa_chinensis	RchiOBHm_Chr4g0432061 RchiOBHm_Chr5g0020111
rosa_laevigata	RLG00000032500
rosa_multiflora	Rmu_sc0002012.1_g000001 Rmu_sc0004769.1_g000009 Rmu_sc0040673.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058090
rosa_rugosa	Rorug01G0143900.1 Rorug05G0057000 Rorug05G0057100 Rorug05G0057200
rosa_samantha	Rh5AG147100 Rh5BG146600 Rh5BG416600 Rh5CG158200 Rh5DG146100
rosa_wichuraiana	Rw5G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	639
AccII	CGCG	1 cut(s)	102
AciI	CCGC	5 cut(s)	100, 197, 364, 367, 768
AclWI	GGATC	1 cut(s)	544
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	5 cut(s)	235, 526, 601, 694, 952
AcuI	CTGAAG	1 cut(s)	457
AcvI	CACGTG	1 cut(s)	491
AfiI	CCNNNNNNNGG	2 cut(s)	175, 908
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	58, 241, 361
AjiI	CACGTC	1 cut(s)	123
AjnI	CCWGG	4 cut(s)	64, 170, 532, 946
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	5 cut(s)	251, 296, 504, 589, 682
AluI	AGCT	5 cut(s)	251, 296, 504, 589, 682
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	544
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	3 cut(s)	97, 464, 689
ApoI	RAATTY	5 cut(s)	235, 526, 601, 694, 952
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	640
AsuHPI	GGTGA	4 cut(s)	297, 522, 665, 758
BbrPI	CACGTG	1 cut(s)	491
BccI	CCATC	2 cut(s)	63, 169
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	4 cut(s)	66, 172, 534, 948
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	231, 687
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	2 cut(s)	100, 365
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	2 cut(s)	101, 366
Bme1390I	CCNGG	4 cut(s)	66, 172, 534, 948
BmgBI	CACGTC	1 cut(s)	123
BmrFI	CCNGG	4 cut(s)	66, 172, 534, 948
BmsI	GCATC	4 cut(s)	556, 649, 742, 983
BpmI	CTGGAG	1 cut(s)	333
Bpu1102I	GCTNAGC	1 cut(s)	594
Bsa29I	ATCGAT	1 cut(s)	840
BsaAI	YACGTR	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	64, 85, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 908
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	647
BseBI	CCWGG	4 cut(s)	66, 172, 534, 948
BseCI	ATCGAT	1 cut(s)	840
BseDI	CCNNGG	3 cut(s)	64, 85, 170
BseGI	GGATG	3 cut(s)	74, 139, 180
BseLI	CCNNNNNNNGG	2 cut(s)	175, 908
BseMI	GCAATG	1 cut(s)	647
BseMII	CTCAG	3 cut(s)	41, 252, 638
BseNI	ACTGG	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	831
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	99, 466, 691
BshVI	ATCGAT	1 cut(s)	840
BslI	CCNNNNNNNGG	2 cut(s)	175, 908
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	3 cut(s)	99, 466, 691
Bsp143I	GATC	4 cut(s)	13, 325, 536, 837
Bsp1720I	GCTNAGC	1 cut(s)	594
BspACI	CCGC	5 cut(s)	100, 197, 364, 367, 768
BspANI	GGCC	3 cut(s)	99, 466, 691
BspCNI	CTCAG	3 cut(s)	42, 253, 637
BspDI	ATCGAT	1 cut(s)	840
BspFNI	CGCG	1 cut(s)	102
BspPI	GGATC	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	647
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	3 cut(s)	64, 85, 170
BssMI	GATC	4 cut(s)	13, 325, 536, 837
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	4 cut(s)	66, 172, 534, 948
Bst4CI	ACNGT	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	491
BstC8I	GCNNGC	3 cut(s)	591, 684, 939
BstDEI	CTNAG	4 cut(s)	50, 261, 594, 624
BstF5I	GGATG	3 cut(s)	74, 139, 180
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	640
BstKTI	GATC	4 cut(s)	16, 328, 539, 840
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	4 cut(s)	13, 325, 536, 837
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 595, 688
BstNI	CCWGG	4 cut(s)	66, 172, 534, 948
BstNSI	RCATGY	1 cut(s)	941
BstSCI	CCNGG	4 cut(s)	64, 170, 532, 946
BstUI	CGCG	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
Bsu15I	ATCGAT	1 cut(s)	840
BsuRI	GGCC	3 cut(s)	99, 466, 691
BsuTUI	ATCGAT	1 cut(s)	840
BtrI	CACGTC	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	74, 139, 180
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	3 cut(s)	135, 446, 481
Cac8I	GCNNGC	3 cut(s)	591, 684, 939
CaiI	CAGNNNCTG	1 cut(s)	299
CfoI	GCGC	1 cut(s)	640
ClaI	ATCGAT	1 cut(s)	840
CviAII	CATG	2 cut(s)	142, 938
DdeI	CTNAG	4 cut(s)	50, 261, 594, 624
DpnI	GATC	4 cut(s)	15, 327, 538, 839
DpnII	GATC	4 cut(s)	13, 325, 536, 837
EaeI	YGGCCR	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	382
Eco130I	CCWWGG	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	457
Eco72I	CACGTG	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	526
EcoRII	CCWGG	4 cut(s)	64, 170, 532, 946
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	2 cut(s)	145, 941
FaiI	YATR	7 cut(s)	143, 194, 507, 524, 864, 878, 939
FatI	CATG	2 cut(s)	141, 937
FauI	CCCGC	1 cut(s)	761
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	100, 365
FokI	GGATG	3 cut(s)	81, 146, 187
Fsp4HI	GCNGC	2 cut(s)	100, 365
FspBI	CTAG	2 cut(s)	231, 687
FspI	TGCGCA	1 cut(s)	639
GlaI	GCGC	1 cut(s)	639
GluI	GCNGC	2 cut(s)	100, 365
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	99, 466, 691
HhaI	GCGC	1 cut(s)	640
Hin1II	CATG	2 cut(s)	145, 941
Hin6I	GCGC	1 cut(s)	638
HinP1I	GCGC	1 cut(s)	638
HinfI	GANTC	8 cut(s)	54, 160, 274, 617, 629, 710, 815, 986
HphI	GGTGA	4 cut(s)	297, 522, 665, 758
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	4 cut(s)	13, 262, 608, 963
Hpy188III	TCNNGA	4 cut(s)	20, 77, 278, 626
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	3 cut(s)	277, 444, 669
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	2 cut(s)	122, 490
HpyCH4V	TGCA	3 cut(s)	444, 812, 937
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 595, 688
HpyF3I	CTNAG	4 cut(s)	50, 261, 594, 624
HpySE526I	ACGT	2 cut(s)	122, 490
Hsp92II	CATG	2 cut(s)	145, 941
HspAI	GCGC	1 cut(s)	638
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	13, 325, 536, 837
LweI	GCATC	4 cut(s)	556, 649, 742, 983
MaeI	CTAG	2 cut(s)	231, 687
MaeII	ACGT	2 cut(s)	122, 490
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	4 cut(s)	15, 327, 538, 839
MboI	GATC	4 cut(s)	13, 325, 536, 837
MboII	GAAGA	8 cut(s)	8, 119, 575, 668, 761, 810, 847, 981
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	7 cut(s)	235, 526, 601, 694, 873, 906, 952
MlyI	GAGTC	3 cut(s)	169, 626, 719
MmeI	TCCRAC	2 cut(s)	246, 760
MnlI	CCTC	3 cut(s)	97, 415, 736
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	3 cut(s)	114, 458, 719
MslI	CAYNNNNRTG	2 cut(s)	146, 828
MspA1I	CMGCKG	1 cut(s)	251
MspR9I	CCNGG	4 cut(s)	66, 172, 534, 948
Mva1269I	GAATGC	1 cut(s)	554
MvaI	CCWGG	4 cut(s)	66, 172, 534, 948
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	3 cut(s)	293, 595, 688
NdeII	GATC	4 cut(s)	13, 325, 536, 837
NlaIII	CATG	2 cut(s)	145, 941
NmuCI	GTSAC	1 cut(s)	161
NsbI	TGCGCA	1 cut(s)	639
NspI	RCATGY	1 cut(s)	941
PaeI	GCATGC	1 cut(s)	941
PceI	AGGCCT	1 cut(s)	466
PctI	GAATGC	1 cut(s)	554
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	5 cut(s)	54, 274, 629, 815, 986
PfoI	TCCNGGA	1 cut(s)	946
PkrI	GCNGC	2 cut(s)	101, 366
PleI	GAGTC	3 cut(s)	168, 625, 718
PmaCI	CACGTG	1 cut(s)	491
PmlI	CACGTG	1 cut(s)	491
PpsI	GAGTC	3 cut(s)	168, 625, 718
Ppu21I	YACGTR	1 cut(s)	491
Psp6I	CCWGG	4 cut(s)	64, 170, 532, 946
PspCI	CACGTG	1 cut(s)	491
PspGI	CCWGG	4 cut(s)	64, 170, 532, 946
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	251
RseI	CAYNNNNRTG	2 cut(s)	146, 828
SaqAI	TTAA	3 cut(s)	114, 458, 719
SatI	GCNGC	2 cut(s)	100, 365
Sau3AI	GATC	4 cut(s)	13, 325, 536, 837
SchI	GAGTC	3 cut(s)	169, 626, 719
ScrFI	CCNGG	4 cut(s)	66, 172, 534, 948
SfaNI	GCATC	4 cut(s)	556, 649, 742, 983
SmiMI	CAYNNNNRTG	2 cut(s)	146, 828
SphI	GCATGC	1 cut(s)	941
Sse9I	AATT	7 cut(s)	235, 526, 601, 694, 873, 906, 952
SseBI	AGGCCT	1 cut(s)	466
SsiI	CCGC	5 cut(s)	100, 197, 364, 367, 768
SspMI	CTAG	2 cut(s)	231, 687
StuI	AGGCCT	1 cut(s)	466
StyD4I	CCNGG	4 cut(s)	64, 170, 532, 946
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	2 cut(s)	125, 493
TaqI	TCGA	2 cut(s)	840, 981
TasI	AATT	7 cut(s)	235, 526, 601, 694, 873, 906, 952
TauI	GCSGC	2 cut(s)	102, 367
TfiI	GAWTC	5 cut(s)	54, 274, 629, 815, 986
Tru1I	TTAA	3 cut(s)	114, 458, 719
Tru9I	TTAA	3 cut(s)	114, 458, 719
TscAI	CASTG	3 cut(s)	135, 446, 481
TseFI	GTSAC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	4 cut(s)	150, 539, 879, 999
TspRI	CASTG	3 cut(s)	135, 446, 481
XapI	RAATTY	5 cut(s)	235, 526, 601, 694, 952
XceI	RCATGY	1 cut(s)	941
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	2 cut(s)	231, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.