Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003630

Physical Location & Seq

Genomic Coordinates Forward (+)

4984742 .. 4986004

Gene Structure 1263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0057000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCCGAGGCACTCATTTCCGCGGTTCTGGAACAATTGGTTACAGTTTCTTTTGACCACACAAAAGAAGCTGTGAAACTGATTTTGAATGCTAAGAAAGAGGTCGAAAAATTTAGCAGCAATCTAGAAGCAATTCAAGCTGTGCTCGAGGATGCTGAGAAGCAGCAAGTGGAGAACGCTAGCGTGAGAAATTGGTTGGATAAGCTGAATGATGTCTCTTACGAGATGGTTGACGTGCTAGATGAGTGGAACACTGAAATTCTAAAACAAGAGGTGAAAAAGAAAACCTCCAAGAAGGTATGTTTCTCCATTCCCTCGAATTGCTTTTGTTTTGGCCAAGTCAATAAGGCAACTCATCTTTATAAAATAGCTACCGAGATGAAAGAGTTGAATGAAAAGCTAACTCTGATTACTGCTCAGAAAGATCAGTTTCATTTTCATCAATCCTCAACTCGTAGGAATGATGAACAGCTTAAGCAACAGCCGAAAACTTCATCATTTGTCGATATTTCTAAAATATTTGGCAGAGAAGAAGCAGAAGCTGATTTGTTAAGCAAGTTGTTGAGTGATAGTAGTGAAGAAGGGAAAGGGGTCCTTGTCATCCCTATAGTGGGTATGGGAGGGATGGGCAAAACAACTCTTGCCCAATTAGCCTACAACAATGAAGATGTAAAAACCTATTTTGAAAAGAGAATATGGGTTTGTGTCTCAGATCCTTTTGATGAGGTGAAGATTGCCAAAGCCATTATTAGGGGTGCCGGTAGTAATGAAGACCAGAATTTAACTGAGTTGGAAGAAGTCTTGCAGTGCATGTCTAGATGTATTAAGGAGAAAAAGTGCTTGATTTTTCTAGATGATGTGTGGACCGAAGTCCAAAGAGAGTGGGAAAGTTTAAACTTACCTTTAATAATGGAAAAAAATTGTGCTAAAGGTAGTAAAATAGTGGTGACCACACGAAAAGAGAAAGTTGCTGAGATAATGGGAGCAACCACTCAAATGATCCATTTGGAGAAGCTGAGTGATAAAAATTGTTTGGCATTGTTGAATAGCATTGCATATTTGGGGAGGGAAGAAGATGAGGCTAATGGATTTGGAGCTATAGGTGAGAAAATAGCAAAAAAGTGTAACGGCTTGCCACTTGCTGCAAAAACTTTAGGTGCTCTCATGCGGTATAAGAAGGAAAGGGGAGATTGGCTGGAGGTCTTGGATAGTAAGATATGGCTTCTAAAAGAGGTTGAGCAACAAGTTTTTCAACTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

420

Amino Acids

47.54

Weight (kDa)

5.51

Isoelectric Point (pI)

27.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	8 - 99	4.5e-22	Rx N-terminal domain
NB-ARC	PF00931	185 - 353	3.3e-33	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140
fragaria_vesca	FvH4_3g12300 FvH4_3g12300 FvH4_3g12300
malus_domestica	MD04G1011100.v1.1 MD05G1251600.v1.1 MD10G1232100.v1.1
prunus_persica	Prupe.4G112100_v2.0.a1 Prupe.4G112100_v2.0.a1
pyrus_communis	pycom05g22930 pycom05g22940 pycom05g22950 pycom10g19540
rosa_chinensis	RchiOBHm_Chr4g0432061 RchiOBHm_Chr5g0020111
rosa_laevigata	RLG00000032500
rosa_multiflora	Rmu_sc0002012.1_g000001 Rmu_sc0004769.1_g000009 Rmu_sc0040673.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058090
rosa_rugosa	Rorug01G0143900.1 Rorug05G0057000 Rorug05G0057100 Rorug05G0057200
rosa_samantha	Rh5AG147100 Rh5BG146600 Rh5BG416600 Rh5CG158200 Rh5DG146100
rosa_wichuraiana	Rw5G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	755
AccII	CGCG	1 cut(s)	23
AciI	CCGC	3 cut(s)	21, 23, 1168
AclWI	GGATC	2 cut(s)	707, 994
AcoI	YGGCCR	2 cut(s)	3, 334
AcsI	RAATTY	3 cut(s)	110, 258, 778
AfiI	CCNNNNNNNGG	3 cut(s)	610, 611, 750
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	6 cut(s)	88, 137, 391, 686, 1045, 1253
AjiI	CACGTC	1 cut(s)	235
AluBI	AGCT	9 cut(s)	71, 140, 205, 371, 400, 472, 542, 1015, 1097
AluI	AGCT	9 cut(s)	71, 140, 205, 371, 400, 472, 542, 1015, 1097
Alw21I	GWGCWC	2 cut(s)	147, 1162
Alw26I	GTCTC	2 cut(s)	220, 712
AlwI	GGATC	2 cut(s)	707, 994
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	3, 334
ApeKI	GCWGC	3 cut(s)	117, 163, 1142
ApoI	RAATTY	3 cut(s)	110, 258, 778
Asp700I	GAANNNNTTC	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	592, 864
AsuHPI	GGTGA	4 cut(s)	286, 739, 958, 1115
AsuNHI	GCTAGC	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	592, 864
BalI	TGGCCA	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	777
Bbv12I	GWGCWC	2 cut(s)	147, 1162
BbvI	GCAGC	3 cut(s)	129, 175, 1129
BccI	CCATC	2 cut(s)	220, 619
BceAI	ACGGC	1 cut(s)	1144
BcoDI	GTCTC	2 cut(s)	220, 712
BfaI	CTAG	5 cut(s)	125, 180, 239, 816, 851
BfmI	CTRYAG	2 cut(s)	606, 1098
BfrI	CTTAAG	1 cut(s)	473
BisI	GCNGC	3 cut(s)	118, 164, 1143
BlsI	GCNGC	3 cut(s)	119, 165, 1144
Bme18I	GGWCC	2 cut(s)	592, 864
BmeT110I	CYCGRG	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	592, 864
BmiI	GGNNCC	2 cut(s)	593, 757
BmsI	GCATC	1 cut(s)	142
BmtI	GCTAGC	1 cut(s)	183
BoxI	GACNNNNGTC	1 cut(s)	869
BpiI	GAAGAC	1 cut(s)	777
BpmI	CTGGAG	1 cut(s)	1217
BsaJI	CCNNGG	2 cut(s)	6, 21
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bsc4I	CCNNNNNNNGG	3 cut(s)	610, 611, 750
Bse118I	RCCGGY	1 cut(s)	758
Bse3DI	GCAATG	1 cut(s)	1050
BseDI	CCNNGG	2 cut(s)	6, 21
BseGI	GGATG	3 cut(s)	157, 600, 630
BseLI	CCNNNNNNNGG	3 cut(s)	610, 611, 750
BseMI	GCAATG	1 cut(s)	1050
BseMII	CTCAG	6 cut(s)	147, 431, 723, 777, 963, 1007
BseXI	GCAGC	3 cut(s)	129, 175, 1129
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	5, 336
BshNI	GGYRCC	1 cut(s)	755
BsiHKAI	GWGCWC	2 cut(s)	147, 1162
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	759
BslI	CCNNNNNNNGG	3 cut(s)	610, 611, 750
BsmAI	GTCTC	2 cut(s)	220, 712
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	5, 336
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	147, 1162
Bsp143I	GATC	3 cut(s)	424, 712, 999
BspACI	CCGC	3 cut(s)	21, 23, 1168
BspANI	GGCC	2 cut(s)	5, 336
BspCNI	CTCAG	6 cut(s)	148, 430, 722, 778, 964, 1008
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	593, 757
BspOI	GCTAGC	1 cut(s)	183
BspPI	GGATC	2 cut(s)	707, 994
BspT107I	GGYRCC	1 cut(s)	755
BspTI	CTTAAG	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	1050
BsrFI	RCCGGY	1 cut(s)	758
BssAI	RCCGGY	1 cut(s)	758
BssECI	CCNNGG	2 cut(s)	6, 21
BssMI	GATC	3 cut(s)	424, 712, 999
Bst4CI	ACNGT	2 cut(s)	46, 1257
BstAFI	CTTAAG	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	181, 1133
BstDEI	CTNAG	7 cut(s)	93, 156, 417, 709, 786, 972, 1016
BstDSI	CCRYGG	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	946
BstF5I	GGATG	3 cut(s)	157, 600, 630
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	3 cut(s)	427, 715, 1002
BstMAI	GTCTC	2 cut(s)	220, 712
BstMBI	GATC	3 cut(s)	424, 712, 999
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 650
BstNSI	RCATGY	1 cut(s)	814
BstPAI	GACNNNNGTC	1 cut(s)	869
BstPI	GGTNACC	1 cut(s)	946
BstSFI	CTRYAG	2 cut(s)	606, 1098
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	3 cut(s)	129, 175, 1129
BstV2I	GAAGAC	1 cut(s)	777
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BsuRI	GGCC	2 cut(s)	5, 336
BtgI	CCRYGG	1 cut(s)	21
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	157, 600, 630
BtsI	GCAGTG	1 cut(s)	812
BtsIMutI	CAGTG	2 cut(s)	252, 812
Cac8I	GCNNGC	2 cut(s)	181, 1133
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr10I	RCCGGY	1 cut(s)	758
Cfr13I	GGNCC	2 cut(s)	592, 864
Cfr42I	CCGCGG	1 cut(s)	24
CspCI	CAANNNNNGTGG	2 cut(s)	863, 898
CviAII	CATG	2 cut(s)	811, 1165
DdeI	CTNAG	7 cut(s)	93, 156, 417, 709, 786, 972, 1016
DpnI	GATC	3 cut(s)	426, 714, 1001
DpnII	GATC	3 cut(s)	424, 712, 999
DraI	TTTAAA	1 cut(s)	894
EaeI	YGGCCR	2 cut(s)	3, 334
Eco47I	GGWCC	2 cut(s)	592, 864
Eco88I	CYCGRG	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	946
EcoO109I	RGGNCCY	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	946
FaeI	CATG	2 cut(s)	814, 1168
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	2 cut(s)	810, 1164
Fnu4HI	GCNGC	3 cut(s)	118, 164, 1143
FokI	GGATG	3 cut(s)	164, 587, 637
Fsp4HI	GCNGC	3 cut(s)	118, 164, 1143
FspBI	CTAG	5 cut(s)	125, 180, 239, 816, 851
GluI	GCNGC	3 cut(s)	118, 164, 1143
GsuI	CTGGAG	1 cut(s)	1217
HaeIII	GGCC	2 cut(s)	5, 336
HapII	CCGG	1 cut(s)	759
Hin1II	CATG	2 cut(s)	814, 1168
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	759
HphI	GGTGA	4 cut(s)	286, 739, 958, 1115
Hpy166II	GTNNAC	2 cut(s)	232, 864
Hpy188I	TCNGA	3 cut(s)	408, 420, 712
Hpy188III	TCNNGA	4 cut(s)	29, 125, 816, 851
Hpy8I	GTNNAC	2 cut(s)	232, 864
HpyAV	CCTTC	3 cut(s)	289, 575, 1171
HpyCH4III	ACNGT	2 cut(s)	46, 1257
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	4 cut(s)	805, 810, 1055, 1145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 650
HpyF3I	CTNAG	7 cut(s)	93, 156, 417, 709, 786, 972, 1016
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	814, 1168
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	424, 712, 999
LmnI	GCTCC	2 cut(s)	983, 1094
LpnPI	CCDG	4 cut(s)	14, 772, 788, 1181
Lsp1109I	GCAGC	3 cut(s)	129, 175, 1129
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	5 cut(s)	125, 180, 239, 816, 851
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	3 cut(s)	40, 946, 1124
MalI	GATC	3 cut(s)	426, 714, 1001
MboI	GATC	3 cut(s)	424, 712, 999
MboII	GAAGA	8 cut(s)	542, 590, 677, 742, 782, 806, 1082, 1085
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	2 cut(s)	147, 1162
MlsI	TGGCCA	1 cut(s)	336
MluNI	TGGCCA	1 cut(s)	336
MmeI	TCCRAC	2 cut(s)	177, 771
Mox20I	TGGCCA	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	336
MseI	TTAA	6 cut(s)	474, 551, 782, 825, 893, 905
MslI	CAYNNNNRTG	1 cut(s)	995
Msp20I	TGGCCA	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	1 cut(s)	759
MssI	GTTTAAAC	1 cut(s)	894
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	94
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	137, 650
NdeII	GATC	3 cut(s)	424, 712, 999
NheI	GCTAGC	1 cut(s)	179
NlaIII	CATG	2 cut(s)	814, 1168
NlaIV	GGNNCC	2 cut(s)	593, 757
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	946
NspI	RCATGY	1 cut(s)	814
PaeR7I	CTCGAG	1 cut(s)	146
PctI	GAATGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	119, 165, 1144
PmeI	GTTTAAAC	1 cut(s)	894
PpuMI	RGGWCCY	1 cut(s)	592
PshAI	GACNNNNGTC	1 cut(s)	869
PsiI	TTATAA	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	592
PspEI	GGTNACC	1 cut(s)	946
PspN4I	GGNNCC	2 cut(s)	593, 757
PspPI	GGNCC	2 cut(s)	592, 864
PspPPI	RGGWCCY	1 cut(s)	592
PspXI	VCTCGAGB	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	712
RseI	CAYNNNNRTG	1 cut(s)	995
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	6 cut(s)	474, 551, 782, 825, 893, 905
SatI	GCNGC	3 cut(s)	118, 164, 1143
Sau3AI	GATC	3 cut(s)	424, 712, 999
Sau96I	GGNCC	2 cut(s)	592, 864
SduI	GDGCHC	2 cut(s)	147, 1162
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	2 cut(s)	606, 1098
Sfr274I	CTCGAG	1 cut(s)	146
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	2 cut(s)	592, 864
SlaI	CTCGAG	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	995
SmlI	CTYRAG	2 cut(s)	146, 473
SmoI	CTYRAG	2 cut(s)	146, 473
SsiI	CCGC	3 cut(s)	21, 23, 1168
SspI	AATATT	1 cut(s)	519
SspMI	CTAG	5 cut(s)	125, 180, 239, 816, 851
TaaI	ACNGT	2 cut(s)	46, 1257
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	4 cut(s)	105, 147, 317, 504
TaqII	GACCGA	1 cut(s)	881
Tru1I	TTAA	6 cut(s)	474, 551, 782, 825, 893, 905
Tru9I	TTAA	6 cut(s)	474, 551, 782, 825, 893, 905
TscAI	CASTG	2 cut(s)	259, 812
TseFI	GTSAC	1 cut(s)	946
TseI	GCWGC	3 cut(s)	117, 163, 1142
Tsp45I	GTSAC	1 cut(s)	946
TspDTI	ATGAA	8 cut(s)	395, 408, 422, 428, 480, 483, 678, 783
TspRI	CASTG	2 cut(s)	259, 812
Vha464I	CTTAAG	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	592, 864
XapI	RAATTY	3 cut(s)	110, 258, 778
XbaI	TCTAGA	3 cut(s)	124, 815, 850
XceI	RCATGY	1 cut(s)	814
XhoI	CTCGAG	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	5 cut(s)	125, 180, 239, 816, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.