Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003630

Physical Location & Seq

Genomic Coordinates Forward (+)

4993080 .. 4995347

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAGGCTAGGGAAGTAGACGGAAGAAAAACGGCAATAAGTGAGGAGGTCCGTCATTTGACGTTAATGTTTGCACCCTTTGGTTTGGATTTTATTTCACCGGTCAATCGGAAAAAGTTGCGTACTCTTGCAACTTTTGATTCAAGAATGAGTAGTAGCATAGATTTAAAAGCAATCTCACAAGTGAAATGTCTGAGGACCTTAAATTTGAGCGGCACATACATTGAAGAACTTCCAGAAGAGATCGGTAAATTGATACATTTGAGGTACCTCGACTTGTCTGTAAGTTATAATTTGGAGAAACTACCGGACAGTGTGGGAAATTTATACAATTTGCAAACCTTGTGTCTTACTGAATGCTCTAATCTTACAGCACTGCCTGAAAATATGGGGAACTTGATTAATTTAAGACATCTTCATACCTGGGGTTGTAATAGGCTGAGAGGTATGGCGAGATTAACAAGTCTGCAAACACTAAATATTTGTCCCCGACTATCAGTGGAAGTTTTGGACAAAGTGAAGACGGTTGGAGATGAATTTTTAGGAATAACGGGCGCTCAAACATCATCATCATCCTCCTCTGTTTTATTCCCAAAATTGAAACAACTCTACTTCGGTGTCATGAGTGAGTGGAAACAGTGGGAAGGAGTTGGAGGGTGGACAGAAAACGGTGGTGATGAAATTACAATTATGCCGTGCCTTGTTTCCTTCACAATCGAGGACTGCCCTAAGCTGATGAACCTGCCACTCTTCCTGCAAAAGACGCCGGTCAGGAATGTTGTCATCAGGTACTGTCGTCGGAGTATTAGAATGCCTGTCTGGCCCGAGAACTGTGACGTCAAAATTTCTGAAGAGAGGGAGGATCCGGATGTTACTTACTGGGAGTTAAAGGCTTCAGTTTTCAGTTGCAAGGAGTTAGATGATGCTGACGATGTTGATAATGATTGCGGTGATGATGAGCAAGATGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

324

Amino Acids

36.73

Weight (kDa)

4.93

Isoelectric Point (pI)

54.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	38 - 94	1e-08	Leucine-rich repeat region
LRR_14	PF23598	82 - 166	6.1e-17	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140
fragaria_vesca	FvH4_3g12300 FvH4_3g12300 FvH4_3g12300
malus_domestica	MD04G1011100.v1.1 MD05G1251600.v1.1 MD10G1232100.v1.1
prunus_persica	Prupe.4G112100_v2.0.a1 Prupe.4G112100_v2.0.a1
pyrus_communis	pycom05g22930 pycom05g22940 pycom05g22950 pycom10g19540
rosa_chinensis	RchiOBHm_Chr4g0432061 RchiOBHm_Chr5g0020111
rosa_laevigata	RLG00000032500
rosa_multiflora	Rmu_sc0002012.1_g000001 Rmu_sc0004769.1_g000009 Rmu_sc0040673.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058090
rosa_rugosa	Rorug01G0143900.1 Rorug05G0057000 Rorug05G0057100 Rorug05G0057200
rosa_samantha	Rh5AG147100 Rh5BG146600 Rh5BG416600 Rh5CG158200 Rh5DG146100
rosa_wichuraiana	Rw5G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AatII	GACGTC	1 cut(s)	840
Acc36I	ACCTGC	1 cut(s)	750
Acc65I	GGTACC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	267
AccBSI	CCGCTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	18
AccIII	TCCGGA	1 cut(s)	865
AciI	CCGC	2 cut(s)	213, 948
AclWI	GGATC	2 cut(s)	857, 870
AcsI	RAATTY	4 cut(s)	205, 322, 536, 843
AcuI	CTGAAG	2 cut(s)	870, 879
AcyI	GRCGYC	2 cut(s)	764, 837
AfaI	GTAC	3 cut(s)	124, 269, 791
AgeI	ACCGGT	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	144, 227, 601
AjnI	CCWGG	1 cut(s)	422
AluBI	AGCT	1 cut(s)	733
AluI	AGCT	1 cut(s)	733
AlwI	GGATC	2 cut(s)	857, 870
AlwNI	CAGNNNCTG	1 cut(s)	792
Ama87I	CYCGRG	1 cut(s)	824
Aor13HI	TCCGGA	1 cut(s)	865
AoxI	GGCC	1 cut(s)	821
ApoI	RAATTY	4 cut(s)	205, 322, 536, 843
ArsI	GACNNNNNNTTYG	4 cut(s)	190, 222, 331, 363
AseI	ATTAAT	1 cut(s)	402
AsiGI	ACCGGT	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	231
Asp718I	GGTACC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	557
AspS9I	GGNCC	3 cut(s)	49, 198, 822
AsuHPI	GGTGA	3 cut(s)	90, 686, 962
AvaI	CYCGRG	1 cut(s)	824
AvaII	GGWCC	2 cut(s)	49, 198
BaeI	ACNNNNGTAYC	2 cut(s)	781, 814
BamHI	GGATCC	1 cut(s)	862
BanI	GGYRCC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	527
BceAI	ACGGC	2 cut(s)	48, 679
BciT130I	CCWGG	1 cut(s)	424
BfaI	CTAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	558
BfuAI	ACCTGC	1 cut(s)	750
BglI	GCCNNNNNGGC	1 cut(s)	820
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	424
Bme18I	GGWCC	2 cut(s)	49, 198
BmeT110I	CYCGRG	1 cut(s)	824
BmgT120I	GGNCC	3 cut(s)	49, 198, 822
BmiI	GGNNCC	2 cut(s)	269, 864
BmrFI	CCNGG	1 cut(s)	424
BmrI	ACTGGG	1 cut(s)	889
BmsI	GCATC	1 cut(s)	913
BmuI	ACTGGG	1 cut(s)	889
BoxI	GACNNNNGTC	1 cut(s)	767
BpiI	GAAGAC	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	729
BsaHI	GRCGYC	2 cut(s)	764, 837
BsaJI	CCNNGG	1 cut(s)	423
BsaWI	WCCGGW	3 cut(s)	100, 307, 865
Bse118I	RCCGGY	2 cut(s)	100, 766
Bse1I	ACTGG	1 cut(s)	884
BseAI	TCCGGA	1 cut(s)	865
BseBI	CCWGG	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	2 cut(s)	572, 874
BseMII	CTCAG	2 cut(s)	185, 431
BseNI	ACTGG	1 cut(s)	884
BseRI	GAGGAG	2 cut(s)	59, 568
BshFI	GGCC	1 cut(s)	823
BshNI	GGYRCC	1 cut(s)	267
BshTI	ACCGGT	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	824
BsiSI	CCGG	4 cut(s)	101, 308, 767, 866
BslFI	GGGAC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	471
BsmI	GAATGC	2 cut(s)	362, 816
BsnI	GGCC	1 cut(s)	823
BsoBI	CYCGRG	1 cut(s)	824
Bsp13I	TCCGGA	1 cut(s)	865
Bsp143I	GATC	2 cut(s)	243, 862
BspACI	CCGC	2 cut(s)	213, 948
BspANI	GGCC	1 cut(s)	823
BspCNI	CTCAG	2 cut(s)	186, 432
BspEI	TCCGGA	1 cut(s)	865
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	2 cut(s)	269, 864
BspMI	ACCTGC	1 cut(s)	750
BspPI	GGATC	2 cut(s)	857, 870
BspT107I	GGYRCC	1 cut(s)	267
BsrBI	CCGCTC	1 cut(s)	213
BsrFI	RCCGGY	2 cut(s)	100, 766
BsrI	ACTGG	1 cut(s)	884
BssAI	RCCGGY	2 cut(s)	100, 766
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	2 cut(s)	243, 862
BssNI	GRCGYC	2 cut(s)	764, 837
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	6 cut(s)	314, 526, 639, 671, 794, 833
Bst6I	CTCTTC	3 cut(s)	234, 755, 846
BstACI	GRCGYC	2 cut(s)	764, 837
BstDEI	CTNAG	3 cut(s)	194, 440, 729
BstF5I	GGATG	2 cut(s)	572, 874
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	2 cut(s)	246, 865
BstMBI	GATC	2 cut(s)	243, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	763, 820
BstNI	CCWGG	1 cut(s)	424
BstPAI	GACNNNNGTC	1 cut(s)	767
BstSCI	CCNGG	1 cut(s)	422
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BsuRI	GGCC	1 cut(s)	823
BtsCI	GGATG	2 cut(s)	572, 874
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	4 cut(s)	319, 374, 504, 644
BveI	ACCTGC	1 cut(s)	750
CaiI	CAGNNNCTG	1 cut(s)	792
CciI	TCATGA	1 cut(s)	621
CfoI	GCGC	1 cut(s)	557
Cfr10I	RCCGGY	2 cut(s)	100, 766
Cfr13I	GGNCC	3 cut(s)	49, 198, 822
CseI	GACGC	1 cut(s)	772
Csp6I	GTAC	3 cut(s)	123, 268, 790
CspAI	ACCGGT	1 cut(s)	100
CviAII	CATG	1 cut(s)	622
CviJI	RGCY	5 cut(s)	8, 439, 733, 823, 893
CviKI_1	RGCY	5 cut(s)	8, 439, 733, 823, 893
CviQI	GTAC	3 cut(s)	123, 268, 790
DdeI	CTNAG	3 cut(s)	194, 440, 729
DpnI	GATC	2 cut(s)	245, 864
DpnII	GATC	2 cut(s)	243, 862
DraI	TTTAAA	1 cut(s)	168
Eam1104I	CTCTTC	3 cut(s)	234, 755, 846
EarI	CTCTTC	3 cut(s)	234, 755, 846
Eco47I	GGWCC	2 cut(s)	49, 198
Eco57I	CTGAAG	2 cut(s)	870, 879
Eco88I	CYCGRG	1 cut(s)	824
EcoO109I	RGGNCCY	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	422
FaeI	CATG	1 cut(s)	625
FaiI	YATR	9 cut(s)	161, 220, 291, 328, 389, 420, 449, 623, 692
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	1 cut(s)	621
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	2 cut(s)	559, 881
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	1 cut(s)	214
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	823
HapII	CCGG	4 cut(s)	101, 308, 767, 866
HgaI	GACGC	1 cut(s)	772
HhaI	GCGC	1 cut(s)	557
Hin1I	GRCGYC	2 cut(s)	764, 837
Hin1II	CATG	1 cut(s)	625
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	4 cut(s)	101, 308, 767, 866
HphI	GGTGA	3 cut(s)	90, 686, 962
Hpy166II	GTNNAC	2 cut(s)	19, 660
Hpy188I	TCNGA	4 cut(s)	111, 195, 801, 850
Hpy188III	TCNNGA	5 cut(s)	144, 236, 622, 772, 866
Hpy8I	GTNNAC	2 cut(s)	19, 660
Hpy99I	CGWCG	1 cut(s)	801
HpyAV	CCTTC	2 cut(s)	638, 718
HpyCH4III	ACNGT	6 cut(s)	314, 526, 639, 671, 794, 833
HpyCH4IV	ACGT	2 cut(s)	62, 837
HpyCH4V	TGCA	6 cut(s)	74, 131, 337, 469, 757, 909
HpyF10VI	GCNNNNNNNGC	2 cut(s)	763, 820
HpyF3I	CTNAG	3 cut(s)	194, 440, 729
HpySE526I	ACGT	2 cut(s)	62, 837
Hsp92I	GRCGYC	2 cut(s)	764, 837
Hsp92II	CATG	1 cut(s)	625
HspAI	GCGC	1 cut(s)	555
Kpn2I	TCCGGA	1 cut(s)	865
KpnI	GGTACC	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	243, 862
LweI	GCATC	1 cut(s)	913
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	2 cut(s)	62, 837
MaeIII	GTNAC	2 cut(s)	833, 871
MalI	GATC	2 cut(s)	245, 864
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	2 cut(s)	243, 862
MboII	GAAGA	7 cut(s)	36, 239, 251, 407, 532, 742, 863
MflI	RGATCY	1 cut(s)	862
MmeI	TCCRAC	3 cut(s)	508, 631, 779
MroI	TCCGGA	1 cut(s)	865
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	7 cut(s)	65, 167, 203, 402, 407, 458, 887
MspI	CCGG	4 cut(s)	101, 308, 767, 866
MspR9I	CCNGG	1 cut(s)	424
Mva1269I	GAATGC	2 cut(s)	362, 816
MvaI	CCWGG	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	763, 820
NdeII	GATC	2 cut(s)	243, 862
NlaIII	CATG	1 cut(s)	625
NlaIV	GGNNCC	2 cut(s)	269, 864
NmuCI	GTSAC	1 cut(s)	833
PagI	TCATGA	1 cut(s)	621
PctI	GAATGC	2 cut(s)	362, 816
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	140
PinAI	ACCGGT	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	198
PshAI	GACNNNNGTC	1 cut(s)	767
PshBI	ATTAAT	1 cut(s)	402
PsiI	TTATAA	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	269, 864
PspPI	GGNCC	3 cut(s)	49, 198, 822
PspPPI	RGGWCCY	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	792
PsuI	RGATCY	1 cut(s)	862
RsaI	GTAC	3 cut(s)	124, 269, 791
RsaNI	GTAC	3 cut(s)	123, 268, 790
SaqAI	TTAA	7 cut(s)	65, 167, 203, 402, 407, 458, 887
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	2 cut(s)	243, 862
Sau96I	GGNCC	3 cut(s)	49, 198, 822
ScrFI	CCNGG	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	913
SinI	GGWCC	2 cut(s)	49, 198
SsiI	CCGC	2 cut(s)	213, 948
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	422
TaaI	ACNGT	6 cut(s)	314, 526, 639, 671, 794, 833
TaiI	ACGT	2 cut(s)	65, 840
TaqI	TCGA	2 cut(s)	273, 717
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	7 cut(s)	65, 167, 203, 402, 407, 458, 887
Tru9I	TTAA	7 cut(s)	65, 167, 203, 402, 407, 458, 887
TscAI	CASTG	4 cut(s)	319, 381, 504, 644
TseFI	GTSAC	1 cut(s)	833
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	4 cut(s)	407, 549, 693, 752
TspGWI	ACGGA	2 cut(s)	36, 41
TspRI	CASTG	4 cut(s)	319, 381, 504, 644
VpaK11BI	GGWCC	2 cut(s)	49, 198
VspI	ATTAAT	1 cut(s)	402
XapI	RAATTY	4 cut(s)	205, 322, 536, 843
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	1 cut(s)	9
ZraI	GACGTC	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.