Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002012.1

Orthogroup ID

OG0003630

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3227

Gene Structure 3227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002012.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1436 bp

acagctcagacagatacccttgggccttttcttcactatcatccagagtatctgcatcagtacgtagtctccgtctcacctccgccatgatgccttggcccgtcaacttgtgtagtgttaacgagtcaatgttgtgcctctggtcaaagtttgctggagaatgcctcggagggacaggacccttcggttatattgatggtaatactctttgtcctacaaagtatgtgatcactgatagtgagggagtaacaggtgagatcactgcagcctacaaaatatggaagaaaacagataaggctttgcttagtcttcttgttgcaacttcttgttactccctcactataacaggtgagatcactgcagcttacaaaatatggaagaaaacagataaggctttgcttagtcttcttgttgcaactttggacgatgaaataatggacattgtgctcaagattgaccttcaaacaatcaagaaaggaaatgattctattcagaggtacttgattcgtgtgaagcgtgcaagatatcagttagcttttgttggggttactatttcagatgaagacatagttgttgtgactctaaatgggctacctgcagaatatgcaatgattaaaactgtcatttattcccgagatactctcatccctctagaaaatctcaggtctcaattgttagctgctgagagagacattgaaggcattttcctaactcattctcacatgtcagcaatggtaacaagaagcaactctcaaagaactcatttttatgcttctgatgaagtagataacagagagaaatataagaacttgtctggaagtgacaaatgcaatggaagtagcttcaacagttggccttacaattccacattcaattccacatttcaaaacaattgtagcaacaaaggcaattcatttgcaggagaacagaatgtgataaataatggtcaaagtgatgtgcacttgcagttgcctccctatttttcacaagcttcaaataagaatggtctaatagctatggttgctcataataccttttcatctcatcttggttatgttgcaccaattgatgaaagtggaaaggatcttgtacattatgttggtagccaaattgccatcgtcccttccaaagatgatatcctttatacacaagtagactcaaatcataaagaccatatggtgttgtctcgagttggtcatctgcctattcactccaccatgattgaatcatctttgcaacctaagaccaatgctgcaacaagaaatggattctctgaaactgaaaatgacaaagacagaaaactagaggtgctttcaagggatgatgtttctccaaacacaactggtaaaggtggctccaagaagcgaaagtttgattcccctggagtagctgaaaacatctttaatagcgtggctactagcattgagcaggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 gag_pre-integrs rve

Protein Analysis

477

Amino Acids

52.65

Weight (kDa)

6.82

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140
fragaria_vesca	FvH4_3g12300 FvH4_3g12300 FvH4_3g12300
malus_domestica	MD04G1011100.v1.1 MD05G1251600.v1.1 MD10G1232100.v1.1
prunus_persica	Prupe.4G112100_v2.0.a1 Prupe.4G112100_v2.0.a1
pyrus_communis	pycom05g22930 pycom05g22940 pycom05g22950 pycom10g19540
rosa_chinensis	RchiOBHm_Chr4g0432061 RchiOBHm_Chr5g0020111
rosa_laevigata	RLG00000032500
rosa_multiflora	Rmu_sc0002012.1_g000001 Rmu_sc0004769.1_g000009 Rmu_sc0040673.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058090
rosa_rugosa	Rorug01G0143900.1 Rorug05G0057000 Rorug05G0057100 Rorug05G0057200
rosa_samantha	Rh5AG147100 Rh5BG146600 Rh5BG416600 Rh5CG158200 Rh5DG146100
rosa_wichuraiana	Rw5G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	603, 1419
AccI	GTMKAC	1 cut(s)	1154
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	1091
AfaI	GTAC	3 cut(s)	62, 499, 1091
AflIII	ACRYGT	1 cut(s)	722
AgsI	TTSAA	8 cut(s)	463, 697, 846, 873, 886, 995, 1225, 1316
AjnI	CCWGG	1 cut(s)	1380
AluBI	AGCT	8 cut(s)	5, 364, 535, 679, 842, 991, 1015, 1390
AluI	AGCT	8 cut(s)	5, 364, 535, 679, 842, 991, 1015, 1390
Alw21I	GWGCWC	2 cut(s)	449, 962
Alw26I	GTCTC	5 cut(s)	73, 79, 671, 683, 1190
Alw44I	GTGCAC	1 cut(s)	958
AlwI	GGATC	1 cut(s)	1091
Ama87I	CYCGRG	2 cut(s)	632, 1187
AoxI	GGCC	3 cut(s)	23, 97, 853
ApaLI	GTGCAC	1 cut(s)	958
ApeKI	GCWGC	4 cut(s)	265, 361, 679, 1252
Asp700I	GAANNNNTTC	1 cut(s)	483
AspS9I	GGNCC	3 cut(s)	23, 98, 178
AsuHPI	GGTGA	3 cut(s)	69, 265, 361
AvaI	CYCGRG	2 cut(s)	632, 1187
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	962
BbsI	GAAGAC	3 cut(s)	301, 397, 569
Bbv12I	GWGCWC	2 cut(s)	449, 962
BbvI	GCAGC	4 cut(s)	277, 373, 666, 1239
BccI	CCATC	2 cut(s)	190, 1123
BciT130I	CCWGG	1 cut(s)	1382
BclI	TGATCA	1 cut(s)	227
BcoDI	GTCTC	5 cut(s)	73, 79, 671, 683, 1190
BfaI	CTAG	4 cut(s)	652, 1303, 1418, 1434
BfmI	CTRYAG	3 cut(s)	263, 359, 596
BfuAI	ACCTGC	2 cut(s)	603, 1419
BisI	GCNGC	4 cut(s)	266, 362, 680, 1253
BlsI	GCNGC	4 cut(s)	267, 363, 681, 1254
Bme1390I	CCNGG	1 cut(s)	1382
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	2 cut(s)	632, 1187
BmgT120I	GGNCC	3 cut(s)	23, 98, 178
BmiI	GGNNCC	2 cut(s)	180, 1356
BmrFI	CCNGG	1 cut(s)	1382
BmsI	GCATC	2 cut(s)	64, 80
BpiI	GAAGAC	3 cut(s)	301, 397, 569
BplI	GAGNNNNNCTC	4 cut(s)	149, 181, 626, 658
BpmI	CTGGAG	2 cut(s)	176, 1403
BpuEI	CTTGAG	1 cut(s)	433
BsaAI	YACGTR	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	671
BsaJI	CCNNGG	4 cut(s)	19, 94, 165, 1380
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bse1I	ACTGG	1 cut(s)	1347
Bse3DI	GCAATG	3 cut(s)	614, 737, 837
BseBI	CCWGG	1 cut(s)	1382
BseDI	CCNNGG	4 cut(s)	19, 94, 165, 1380
BseGI	GGATG	3 cut(s)	40, 644, 1326
BseMI	GCAATG	3 cut(s)	614, 737, 837
BseMII	CTCAG	3 cut(s)	20, 674, 675
BseNI	ACTGG	1 cut(s)	1347
BseSI	GKGCMC	1 cut(s)	962
BseXI	GCAGC	4 cut(s)	277, 373, 666, 1239
BshFI	GGCC	3 cut(s)	25, 99, 855
BsiHKAI	GWGCWC	2 cut(s)	449, 962
BsiHKCI	CYCGRG	2 cut(s)	632, 1187
BslFI	GGGAC	2 cut(s)	186, 1105
BsmAI	GTCTC	5 cut(s)	73, 79, 671, 683, 1190
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	2 cut(s)	186, 1105
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	3 cut(s)	25, 99, 855
Bso31I	GGTCTC	1 cut(s)	671
BsoBI	CYCGRG	2 cut(s)	632, 1187
Bsp1286I	GDGCHC	2 cut(s)	449, 962
Bsp1407I	TGTACA	1 cut(s)	1089
Bsp143I	GATC	4 cut(s)	227, 257, 353, 1083
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	3 cut(s)	25, 99, 855
BspCNI	CTCAG	3 cut(s)	19, 674, 675
BspLI	GGNNCC	2 cut(s)	180, 1356
BspMAI	CTGCAG	3 cut(s)	267, 363, 600
BspMI	ACCTGC	2 cut(s)	603, 1419
BspPI	GGATC	1 cut(s)	1091
BspTNI	GGTCTC	1 cut(s)	671
BsrDI	GCAATG	3 cut(s)	614, 737, 837
BsrGI	TGTACA	1 cut(s)	1089
BsrI	ACTGG	1 cut(s)	1347
BssECI	CCNNGG	4 cut(s)	19, 94, 165, 1380
BssMI	GATC	4 cut(s)	227, 257, 353, 1083
BssT1I	CCWWGG	2 cut(s)	19, 94
Bst2UI	CCWGG	1 cut(s)	1382
Bst4CI	ACNGT	2 cut(s)	621, 850
BstAPI	GCANNNNNTGC	1 cut(s)	604
BstAUI	TGTACA	1 cut(s)	1089
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	6 cut(s)	6, 304, 400, 661, 683, 1241
BstF5I	GGATG	3 cut(s)	40, 644, 1326
BstKTI	GATC	4 cut(s)	230, 260, 356, 1086
BstMAI	GTCTC	5 cut(s)	73, 79, 671, 683, 1190
BstMBI	GATC	4 cut(s)	227, 257, 353, 1083
BstMWI	GCNNNNNNNGC	3 cut(s)	604, 905, 1021
BstNI	CCWGG	1 cut(s)	1382
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	1 cut(s)	1380
BstSFI	CTRYAG	3 cut(s)	263, 359, 596
BstSLI	GKGCMC	1 cut(s)	962
BstSNI	TACGTA	1 cut(s)	64
BstV1I	GCAGC	4 cut(s)	277, 373, 666, 1239
BstV2I	GAAGAC	3 cut(s)	301, 397, 569
BstX2I	RGATCY	1 cut(s)	1083
BstYI	RGATCY	1 cut(s)	1083
BsuRI	GGCC	3 cut(s)	25, 99, 855
BtsCI	GGATG	3 cut(s)	40, 644, 1326
BtsI	GCAGTG	2 cut(s)	260, 356
BtsIMutI	CAGTG	3 cut(s)	230, 260, 356
BveI	ACCTGC	2 cut(s)	603, 1419
Cac8I	GCNNGC	1 cut(s)	518
Cfr13I	GGNCC	3 cut(s)	23, 98, 178
Csp6I	GTAC	3 cut(s)	61, 498, 1090
CspCI	CAANNNNNGTGG	2 cut(s)	1203, 1238
CviAII	CATG	3 cut(s)	87, 723, 1218
CviQI	GTAC	3 cut(s)	61, 498, 1090
DdeI	CTNAG	6 cut(s)	6, 304, 400, 661, 683, 1241
DpnI	GATC	4 cut(s)	229, 259, 355, 1085
DpnII	GATC	4 cut(s)	227, 257, 353, 1083
EciI	GGCGGA	1 cut(s)	72
Eco105I	TACGTA	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	19, 94
Eco31I	GGTCTC	1 cut(s)	671
Eco32I	GATATC	2 cut(s)	526, 1137
Eco47I	GGWCC	1 cut(s)	178
Eco88I	CYCGRG	2 cut(s)	632, 1187
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	1380
EcoRV	GATATC	2 cut(s)	526, 1137
EcoT14I	CCWWGG	2 cut(s)	19, 94
ErhI	CCWWGG	2 cut(s)	19, 94
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	3 cut(s)	90, 726, 1221
FaqI	GGGAC	2 cut(s)	186, 1105
FatI	CATG	3 cut(s)	86, 722, 1217
FauNDI	CATATG	1 cut(s)	1175
FbaI	TGATCA	1 cut(s)	227
FblI	GTMKAC	1 cut(s)	1154
Fnu4HI	GCNGC	4 cut(s)	266, 362, 680, 1253
FokI	GGATG	3 cut(s)	27, 631, 1333
Fsp4HI	GCNGC	4 cut(s)	266, 362, 680, 1253
FspBI	CTAG	4 cut(s)	652, 1303, 1418, 1434
GluI	GCNGC	4 cut(s)	266, 362, 680, 1253
GsuI	CTGGAG	2 cut(s)	176, 1403
HaeIII	GGCC	3 cut(s)	25, 99, 855
Hin1II	CATG	3 cut(s)	90, 726, 1221
HincII	GTYRAC	2 cut(s)	105, 120
HindII	GTYRAC	2 cut(s)	105, 120
HindIII	AAGCTT	1 cut(s)	989
HinfI	GANTC	8 cut(s)	124, 484, 504, 579, 1156, 1225, 1268, 1375
HpaI	GTTAAC	1 cut(s)	120
HphI	GGTGA	3 cut(s)	69, 265, 361
Hpy166II	GTNNAC	4 cut(s)	105, 120, 960, 1155
Hpy188I	TCNGA	6 cut(s)	9, 169, 494, 558, 777, 1275
Hpy188III	TCNNGA	7 cut(s)	44, 450, 471, 632, 652, 815, 1187
Hpy8I	GTNNAC	4 cut(s)	105, 120, 960, 1155
HpyAV	CCTTC	4 cut(s)	192, 469, 691, 1133
HpyCH4III	ACNGT	2 cut(s)	621, 850
HpyCH4IV	ACGT	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	3 cut(s)	604, 905, 1021
HpyF3I	CTNAG	6 cut(s)	6, 304, 400, 661, 683, 1241
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	90, 726, 1221
Ksp22I	TGATCA	1 cut(s)	227
KspAI	GTTAAC	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	227, 257, 353, 1083
LmnI	GCTCC	1 cut(s)	1360
Lsp1109I	GCAGC	4 cut(s)	277, 373, 666, 1239
LweI	GCATC	2 cut(s)	64, 80
MaeI	CTAG	4 cut(s)	652, 1303, 1418, 1434
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	6 cut(s)	246, 328, 546, 576, 735, 820
MalI	GATC	4 cut(s)	229, 259, 355, 1085
MboI	GATC	4 cut(s)	227, 257, 353, 1083
MboII	GAAGA	6 cut(s)	23, 294, 301, 390, 397, 574
MfeI	CAATTG	3 cut(s)	670, 891, 1064
MflI	RGATCY	1 cut(s)	1083
MhlI	GDGCHC	2 cut(s)	449, 962
MluCI	AATT	7 cut(s)	670, 861, 873, 891, 909, 1064, 1109
MlyI	GAGTC	3 cut(s)	133, 573, 1150
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	3 cut(s)	119, 614, 1403
MslI	CAYNNNNRTG	1 cut(s)	767
MspR9I	CCNGG	1 cut(s)	1382
MunI	CAATTG	3 cut(s)	670, 891, 1064
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	1382
MwoI	GCNNNNNNNGC	3 cut(s)	604, 905, 1021
NdeI	CATATG	1 cut(s)	1175
NdeII	GATC	4 cut(s)	227, 257, 353, 1083
NlaIII	CATG	3 cut(s)	90, 726, 1221
NlaIV	GGNNCC	2 cut(s)	180, 1356
NmuCI	GTSAC	2 cut(s)	576, 820
NspI	RCATGY	1 cut(s)	726
PaeR7I	CTCGAG	1 cut(s)	1187
PciI	ACATGT	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 513
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	5 cut(s)	484, 504, 1225, 1268, 1375
PkrI	GCNGC	4 cut(s)	267, 363, 681, 1254
PleI	GAGTC	3 cut(s)	132, 573, 1150
PpsI	GAGTC	3 cut(s)	132, 573, 1150
Ppu21I	YACGTR	1 cut(s)	64
PpuMI	RGGWCCY	1 cut(s)	178
PscI	ACATGT	1 cut(s)	722
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	1380
PspGI	CCWGG	1 cut(s)	1380
PspN4I	GGNNCC	2 cut(s)	180, 1356
PspPI	GGNCC	3 cut(s)	23, 98, 178
PspPPI	RGGWCCY	1 cut(s)	178
PstI	CTGCAG	3 cut(s)	267, 363, 600
PsuI	RGATCY	1 cut(s)	1083
RsaI	GTAC	3 cut(s)	62, 499, 1091
RsaNI	GTAC	3 cut(s)	61, 498, 1090
RseI	CAYNNNNRTG	1 cut(s)	767
SaqAI	TTAA	3 cut(s)	119, 614, 1403
SatI	GCNGC	4 cut(s)	266, 362, 680, 1253
Sau3AI	GATC	4 cut(s)	227, 257, 353, 1083
Sau96I	GGNCC	3 cut(s)	23, 98, 178
SchI	GAGTC	3 cut(s)	133, 573, 1150
ScrFI	CCNGG	1 cut(s)	1382
SduI	GDGCHC	2 cut(s)	449, 962
SfaNI	GCATC	2 cut(s)	64, 80
SfcI	CTRYAG	3 cut(s)	263, 359, 596
Sfr274I	CTCGAG	1 cut(s)	1187
SinI	GGWCC	1 cut(s)	178
SlaI	CTCGAG	1 cut(s)	1187
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	2 cut(s)	448, 1187
SmoI	CTYRAG	2 cut(s)	448, 1187
SnaBI	TACGTA	1 cut(s)	64
Sse9I	AATT	7 cut(s)	670, 861, 873, 891, 909, 1064, 1109
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	4 cut(s)	652, 1303, 1418, 1434
StyD4I	CCNGG	1 cut(s)	1380
StyI	CCWWGG	2 cut(s)	19, 94
TaaI	ACNGT	2 cut(s)	621, 850
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	1188
TasI	AATT	7 cut(s)	670, 861, 873, 891, 909, 1064, 1109
TatI	WGTACW	1 cut(s)	1089
TfiI	GAWTC	5 cut(s)	484, 504, 1225, 1268, 1375
Tru1I	TTAA	3 cut(s)	119, 614, 1403
Tru9I	TTAA	3 cut(s)	119, 614, 1403
TscAI	CASTG	3 cut(s)	237, 267, 363
TseFI	GTSAC	2 cut(s)	576, 820
TseI	GCWGC	4 cut(s)	265, 361, 679, 1252
Tsp45I	GTSAC	2 cut(s)	576, 820
TspDTI	ATGAA	6 cut(s)	443, 575, 794, 902, 1028, 1085
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	3 cut(s)	237, 267, 363
VneI	GTGCAC	1 cut(s)	958
VpaK11BI	GGWCC	1 cut(s)	178
XbaI	TCTAGA	1 cut(s)	651
XceI	RCATGY	1 cut(s)	726
XhoI	CTCGAG	1 cut(s)	1187
XmiI	GTMKAC	1 cut(s)	1154
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	4 cut(s)	652, 1303, 1418, 1434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.