DCD
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140 |
| fragaria_vesca | FvH4_3g12300 FvH4_3g12300 FvH4_3g12300 |
| malus_domestica | MD04G1011100.v1.1 MD05G1251600.v1.1 MD10G1232100.v1.1 |
| prunus_persica | Prupe.4G112100_v2.0.a1 Prupe.4G112100_v2.0.a1 |
| pyrus_communis | pycom05g22930 pycom05g22940 pycom05g22950 pycom10g19540 |
| rosa_chinensis | RchiOBHm_Chr4g0432061 RchiOBHm_Chr5g0020111 |
| rosa_laevigata | RLG00000032500 |
| rosa_multiflora | Rmu_sc0002012.1_g000001 Rmu_sc0004769.1_g000009 Rmu_sc0040673.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00058090 |
| rosa_rugosa | Rorug01G0143900.1 Rorug05G0057000 Rorug05G0057100 Rorug05G0057200 |
| rosa_samantha | Rh5AG147100 Rh5BG146600 Rh5BG416600 Rh5CG158200 Rh5DG146100 |
| rosa_wichuraiana | Rw5G013000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1897 |
| AccB1I | GGYRCC | 2 cut(s) | 1699, 1897 |
| AccII | CGCG | 1 cut(s) | 309 |
| AccIII | TCCGGA | 1 cut(s) | 1172 |
| AciI | CCGC | 9 cut(s) | 181, 364, 367, 379, 758, 869, 962, 1242, 1901 |
| AclWI | GGATC | 1 cut(s) | 1674 |
| AcsI | RAATTY | 5 cut(s) | 669, 881, 1167, 1390, 1762 |
| AcuI | CTGAAG | 2 cut(s) | 33, 35 |
| AfaI | GTAC | 5 cut(s) | 375, 766, 970, 1072, 1899 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1241, 1481, 1765, 1942 |
| AflIII | ACRYGT | 1 cut(s) | 307 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1181 |
| AhlI | ACTAGT | 1 cut(s) | 701 |
| AjnI | CCWGG | 2 cut(s) | 58, 499 |
| AluBI | AGCT | 6 cut(s) | 156, 601, 864, 1009, 1515, 1812 |
| AluI | AGCT | 6 cut(s) | 156, 601, 864, 1009, 1515, 1812 |
| Alw21I | GWGCWC | 1 cut(s) | 1317 |
| Alw26I | GTCTC | 3 cut(s) | 1218, 1257, 1329 |
| AlwI | GGATC | 1 cut(s) | 1674 |
| Ama87I | CYCGRG | 1 cut(s) | 981 |
| Aor13HI | TCCGGA | 1 cut(s) | 1172 |
| AoxI | GGCC | 4 cut(s) | 182, 476, 1079, 1243 |
| ApeKI | GCWGC | 4 cut(s) | 924, 1026, 1230, 1512 |
| ApoI | RAATTY | 5 cut(s) | 669, 881, 1167, 1390, 1762 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 273, 661, 1134 |
| Asp718I | GGTACC | 1 cut(s) | 1897 |
| AspS9I | GGNCC | 2 cut(s) | 1175, 1756 |
| AsuHPI | GGTGA | 6 cut(s) | 172, 404, 634, 1496, 1598, 1853 |
| AvaI | CYCGRG | 1 cut(s) | 981 |
| AvaII | GGWCC | 2 cut(s) | 1175, 1756 |
| BanI | GGYRCC | 2 cut(s) | 1699, 1897 |
| Bbv12I | GWGCWC | 1 cut(s) | 1317 |
| BbvI | GCAGC | 4 cut(s) | 936, 1038, 1242, 1524 |
| BccI | CCATC | 2 cut(s) | 704, 1672 |
| BciT130I | CCWGG | 2 cut(s) | 60, 501 |
| BclI | TGATCA | 1 cut(s) | 325 |
| BcoDI | GTCTC | 3 cut(s) | 1218, 1257, 1329 |
| BcuI | ACTAGT | 1 cut(s) | 701 |
| BfaI | CTAG | 3 cut(s) | 189, 702, 1745 |
| BfmI | CTRYAG | 1 cut(s) | 151 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1239 |
| BglII | AGATCT | 1 cut(s) | 827 |
| BisI | GCNGC | 8 cut(s) | 182, 365, 870, 925, 1027, 1231, 1243, 1513 |
| BlsI | GCNGC | 8 cut(s) | 183, 366, 871, 926, 1028, 1232, 1244, 1514 |
| Bme1390I | CCNGG | 2 cut(s) | 60, 501 |
| Bme18I | GGWCC | 2 cut(s) | 1175, 1756 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1181 |
| BmeT110I | CYCGRG | 1 cut(s) | 981 |
| BmgT120I | GGNCC | 2 cut(s) | 1175, 1756 |
| BmiI | GGNNCC | 5 cut(s) | 1305, 1549, 1701, 1757, 1899 |
| BmrFI | CCNGG | 2 cut(s) | 60, 501 |
| BmsI | GCATC | 7 cut(s) | 97, 119, 557, 881, 1564, 1634, 1843 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1840, 1872 |
| BpmI | CTGGAG | 1 cut(s) | 1466 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1516 |
| BpuEI | CTTGAG | 2 cut(s) | 1068, 1311 |
| BsaJI | CCNNGG | 2 cut(s) | 411, 742 |
| BsaWI | WCCGGW | 1 cut(s) | 1172 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1241, 1481, 1765, 1942 |
| Bse1I | ACTGG | 3 cut(s) | 1449, 1605, 1683 |
| Bse3DI | GCAATG | 4 cut(s) | 138, 638, 971, 1073 |
| BseAI | TCCGGA | 1 cut(s) | 1172 |
| BseBI | CCWGG | 2 cut(s) | 60, 501 |
| BseDI | CCNNGG | 2 cut(s) | 411, 742 |
| BseGI | GGATG | 2 cut(s) | 124, 421 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1241, 1481, 1765, 1942 |
| BseMI | GCAATG | 4 cut(s) | 138, 638, 971, 1073 |
| BseMII | CTCAG | 5 cut(s) | 237, 1530, 1611, 1686, 1895 |
| BseNI | ACTGG | 3 cut(s) | 1449, 1605, 1683 |
| BseXI | GCAGC | 4 cut(s) | 936, 1038, 1242, 1524 |
| BseYI | CCCAGC | 1 cut(s) | 156 |
| BsgI | GTGCAG | 3 cut(s) | 179, 444, 726 |
| Bsh1236I | CGCG | 1 cut(s) | 309 |
| BshFI | GGCC | 4 cut(s) | 184, 478, 1081, 1245 |
| BshNI | GGYRCC | 2 cut(s) | 1699, 1897 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1317 |
| BsiHKCI | CYCGRG | 1 cut(s) | 981 |
| BsiSI | CCGG | 1 cut(s) | 1173 |
| BslFI | GGGAC | 1 cut(s) | 1769 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1241, 1481, 1765, 1942 |
| BsmAI | GTCTC | 3 cut(s) | 1218, 1257, 1329 |
| BsmBI | CGTCTC | 1 cut(s) | 1329 |
| BsmFI | GGGAC | 1 cut(s) | 1769 |
| BsnI | GGCC | 4 cut(s) | 184, 478, 1081, 1245 |
| BsoBI | CYCGRG | 1 cut(s) | 981 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1317 |
| Bsp13I | TCCGGA | 1 cut(s) | 1172 |
| Bsp1407I | TGTACA | 2 cut(s) | 968, 1070 |
| Bsp143I | GATC | 7 cut(s) | 10, 325, 827, 1222, 1486, 1672, 1679 |
| BspACI | CCGC | 9 cut(s) | 181, 364, 367, 379, 758, 869, 962, 1242, 1901 |
| BspANI | GGCC | 4 cut(s) | 184, 478, 1081, 1245 |
| BspCNI | CTCAG | 5 cut(s) | 238, 1529, 1612, 1687, 1896 |
| BspEI | TCCGGA | 1 cut(s) | 1172 |
| BspFNI | CGCG | 1 cut(s) | 309 |
| BspHI | TCATGA | 4 cut(s) | 799, 913, 1015, 1219 |
| BspLI | GGNNCC | 5 cut(s) | 1305, 1549, 1701, 1757, 1899 |
| BspPI | GGATC | 1 cut(s) | 1674 |
| BspQI | GCTCTTC | 1 cut(s) | 1863 |
| BspT107I | GGYRCC | 2 cut(s) | 1699, 1897 |
| BsrDI | GCAATG | 4 cut(s) | 138, 638, 971, 1073 |
| BsrGI | TGTACA | 2 cut(s) | 968, 1070 |
| BsrI | ACTGG | 3 cut(s) | 1449, 1605, 1683 |
| BssECI | CCNNGG | 2 cut(s) | 411, 742 |
| BssMI | GATC | 7 cut(s) | 10, 325, 827, 1222, 1486, 1672, 1679 |
| BssT1I | CCWWGG | 2 cut(s) | 411, 742 |
| Bst2UI | CCWGG | 2 cut(s) | 60, 501 |
| Bst4CI | ACNGT | 6 cut(s) | 441, 797, 1179, 1357, 1639, 1714 |
| Bst6I | CTCTTC | 4 cut(s) | 915, 1221, 1863, 1910 |
| BstAUI | TGTACA | 2 cut(s) | 968, 1070 |
| BstC8I | GCNNGC | 1 cut(s) | 546 |
| BstF5I | GGATG | 2 cut(s) | 124, 421 |
| BstFNI | CGCG | 1 cut(s) | 309 |
| BstKTI | GATC | 7 cut(s) | 13, 328, 830, 1225, 1489, 1675, 1682 |
| BstMAI | GTCTC | 3 cut(s) | 1218, 1257, 1329 |
| BstMBI | GATC | 7 cut(s) | 10, 325, 827, 1222, 1486, 1672, 1679 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1043, 1239 |
| BstNI | CCWGG | 2 cut(s) | 60, 501 |
| BstNSI | RCATGY | 1 cut(s) | 1838 |
| BstSCI | CCNGG | 2 cut(s) | 58, 499 |
| BstSFI | CTRYAG | 1 cut(s) | 151 |
| BstUI | CGCG | 1 cut(s) | 309 |
| BstV1I | GCAGC | 4 cut(s) | 936, 1038, 1242, 1524 |
| BstX2I | RGATCY | 2 cut(s) | 827, 1679 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1837 |
| BstYI | RGATCY | 2 cut(s) | 827, 1679 |
| BsuRI | GGCC | 4 cut(s) | 184, 478, 1081, 1245 |
| BtgZI | GCGATG | 1 cut(s) | 519 |
| BtsCI | GGATG | 2 cut(s) | 124, 421 |
| BtsI | GCAGTG | 1 cut(s) | 458 |
| BtsIMutI | CAGTG | 4 cut(s) | 120, 458, 1353, 1710 |
| Cac8I | GCNNGC | 1 cut(s) | 546 |
| CciI | TCATGA | 4 cut(s) | 799, 913, 1015, 1219 |
| Cfr13I | GGNCC | 2 cut(s) | 1175, 1756 |
| CpoI | CGGWCCG | 1 cut(s) | 1175 |
| Csp6I | GTAC | 5 cut(s) | 374, 765, 969, 1071, 1898 |
| CspI | CGGWCCG | 1 cut(s) | 1175 |
| CviQI | GTAC | 5 cut(s) | 374, 765, 969, 1071, 1898 |
| DpnI | GATC | 7 cut(s) | 12, 327, 829, 1224, 1488, 1674, 1681 |
| DpnII | GATC | 7 cut(s) | 10, 325, 827, 1222, 1486, 1672, 1679 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1181 |
| Eam1104I | CTCTTC | 4 cut(s) | 915, 1221, 1863, 1910 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1181 |
| EarI | CTCTTC | 4 cut(s) | 915, 1221, 1863, 1910 |
| EciI | GGCGGA | 1 cut(s) | 382 |
| Eco130I | CCWWGG | 2 cut(s) | 411, 742 |
| Eco32I | GATATC | 1 cut(s) | 1342 |
| Eco47I | GGWCC | 2 cut(s) | 1175, 1756 |
| Eco57I | CTGAAG | 2 cut(s) | 33, 35 |
| Eco88I | CYCGRG | 1 cut(s) | 981 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1756 |
| EcoRI | GAATTC | 1 cut(s) | 1390 |
| EcoRII | CCWGG | 2 cut(s) | 58, 499 |
| EcoRV | GATATC | 1 cut(s) | 1342 |
| EcoT14I | CCWWGG | 2 cut(s) | 411, 742 |
| EcoT22I | ATGCAT | 2 cut(s) | 81, 112 |
| ErhI | CCWWGG | 2 cut(s) | 411, 742 |
| Esp3I | CGTCTC | 1 cut(s) | 1329 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 894, 926, 996, 1028 |
| FaqI | GGGAC | 1 cut(s) | 1769 |
| FbaI | TGATCA | 1 cut(s) | 325 |
| Fnu4HI | GCNGC | 8 cut(s) | 182, 365, 870, 925, 1027, 1231, 1243, 1513 |
| FokI | GGATG | 2 cut(s) | 131, 428 |
| Fsp4HI | GCNGC | 8 cut(s) | 182, 365, 870, 925, 1027, 1231, 1243, 1513 |
| FspBI | CTAG | 3 cut(s) | 189, 702, 1745 |
| GluI | GCNGC | 8 cut(s) | 182, 365, 870, 925, 1027, 1231, 1243, 1513 |
| GsaI | CCCAGC | 1 cut(s) | 160 |
| GsuI | CTGGAG | 1 cut(s) | 1466 |
| HaeIII | GGCC | 4 cut(s) | 184, 478, 1081, 1245 |
| HapII | CCGG | 1 cut(s) | 1173 |
| HindIII | AAGCTT | 1 cut(s) | 862 |
| HpaII | CCGG | 1 cut(s) | 1173 |
| HphI | GGTGA | 6 cut(s) | 172, 404, 634, 1496, 1598, 1853 |
| Hpy166II | GTNNAC | 3 cut(s) | 241, 374, 991 |
| Hpy8I | GTNNAC | 3 cut(s) | 241, 374, 991 |
| HpyAV | CCTTC | 5 cut(s) | 588, 887, 989, 1193, 1917 |
| HpyCH4III | ACNGT | 6 cut(s) | 441, 797, 1179, 1357, 1639, 1714 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1043, 1239 |
| Kpn2I | TCCGGA | 1 cut(s) | 1172 |
| KpnI | GGTACC | 1 cut(s) | 1901 |
| Ksp22I | TGATCA | 1 cut(s) | 325 |
| Kzo9I | GATC | 7 cut(s) | 10, 325, 827, 1222, 1486, 1672, 1679 |
| LguI | GCTCTTC | 1 cut(s) | 1863 |
| Lsp1109I | GCAGC | 4 cut(s) | 936, 1038, 1242, 1524 |
| LweI | GCATC | 7 cut(s) | 97, 119, 557, 881, 1564, 1634, 1843 |
| MaeI | CTAG | 3 cut(s) | 189, 702, 1745 |
| MaeIII | GTNAC | 6 cut(s) | 146, 552, 753, 957, 1059, 1346 |
| MalI | GATC | 7 cut(s) | 12, 327, 829, 1224, 1488, 1674, 1681 |
| MboI | GATC | 7 cut(s) | 10, 325, 827, 1222, 1486, 1672, 1679 |
| MfeI | CAATTG | 1 cut(s) | 1236 |
| MflI | RGATCY | 2 cut(s) | 827, 1679 |
| MhlI | GDGCHC | 1 cut(s) | 1317 |
| MluI | ACGCGT | 1 cut(s) | 307 |
| MlyI | GAGTC | 5 cut(s) | 236, 1220, 1283, 1373, 1443 |
| MmeI | TCCRAC | 2 cut(s) | 231, 715 |
| MnlI | CCTC | 9 cut(s) | 85, 718, 918, 990, 1092, 1538, 1615, 1690, 1913 |
| Mph1103I | ATGCAT | 2 cut(s) | 81, 112 |
| MroI | TCCGGA | 1 cut(s) | 1172 |
| MroXI | GAANNNNTTC | 3 cut(s) | 273, 661, 1134 |
| MseI | TTAA | 4 cut(s) | 387, 582, 1299, 1821 |
| MslI | CAYNNNNRTG | 3 cut(s) | 131, 804, 1839 |
| MspA1I | CMGCKG | 2 cut(s) | 156, 1903 |
| MspI | CCGG | 1 cut(s) | 1173 |
| MspR9I | CCNGG | 2 cut(s) | 60, 501 |
| MunI | CAATTG | 1 cut(s) | 1236 |
| MvaI | CCWGG | 2 cut(s) | 60, 501 |
| MvnI | CGCG | 1 cut(s) | 309 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1043, 1239 |
| NdeII | GATC | 7 cut(s) | 10, 325, 827, 1222, 1486, 1672, 1679 |
| NlaIV | GGNNCC | 5 cut(s) | 1305, 1549, 1701, 1757, 1899 |
| NmeAIII | GCCGAG | 1 cut(s) | 504 |
| NmuCI | GTSAC | 2 cut(s) | 552, 1346 |
| NsiI | ATGCAT | 2 cut(s) | 81, 112 |
| NspI | RCATGY | 1 cut(s) | 1838 |
| PaeR7I | CTCGAG | 1 cut(s) | 981 |
| PagI | TCATGA | 4 cut(s) | 799, 913, 1015, 1219 |
| PciSI | GCTCTTC | 1 cut(s) | 1863 |
| PdmI | GAANNNNTTC | 3 cut(s) | 273, 661, 1134 |
| PfeI | GAWTC | 5 cut(s) | 274, 560, 974, 1601, 1736 |
| PkrI | GCNGC | 8 cut(s) | 183, 366, 871, 926, 1028, 1232, 1244, 1514 |
| PleI | GAGTC | 5 cut(s) | 236, 1219, 1283, 1372, 1442 |
| PpsI | GAGTC | 5 cut(s) | 236, 1219, 1283, 1372, 1442 |
| PpuMI | RGGWCCY | 1 cut(s) | 1756 |
| Psp5II | RGGWCCY | 1 cut(s) | 1756 |
| Psp6I | CCWGG | 2 cut(s) | 58, 499 |
| PspFI | CCCAGC | 1 cut(s) | 156 |
| PspGI | CCWGG | 2 cut(s) | 58, 499 |
| PspN4I | GGNNCC | 5 cut(s) | 1305, 1549, 1701, 1757, 1899 |
| PspPI | GGNCC | 2 cut(s) | 1175, 1756 |
| PspPPI | RGGWCCY | 1 cut(s) | 1756 |
| PspXI | VCTCGAGB | 1 cut(s) | 981 |
| PsuI | RGATCY | 2 cut(s) | 827, 1679 |
| PvuII | CAGCTG | 1 cut(s) | 156 |
| RsaI | GTAC | 5 cut(s) | 375, 766, 970, 1072, 1899 |
| RsaNI | GTAC | 5 cut(s) | 374, 765, 969, 1071, 1898 |
| RseI | CAYNNNNRTG | 3 cut(s) | 131, 804, 1839 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1175 |
| RsrII | CGGWCCG | 1 cut(s) | 1175 |
| SapI | GCTCTTC | 1 cut(s) | 1863 |
| SaqAI | TTAA | 4 cut(s) | 387, 582, 1299, 1821 |
| SatI | GCNGC | 8 cut(s) | 182, 365, 870, 925, 1027, 1231, 1243, 1513 |
| Sau3AI | GATC | 7 cut(s) | 10, 325, 827, 1222, 1486, 1672, 1679 |
| Sau96I | GGNCC | 2 cut(s) | 1175, 1756 |
| SchI | GAGTC | 5 cut(s) | 236, 1220, 1283, 1373, 1443 |
| ScrFI | CCNGG | 2 cut(s) | 60, 501 |
| SduI | GDGCHC | 1 cut(s) | 1317 |
| SfaNI | GCATC | 7 cut(s) | 97, 119, 557, 881, 1564, 1634, 1843 |
| SfcI | CTRYAG | 1 cut(s) | 151 |
| Sfr274I | CTCGAG | 1 cut(s) | 981 |
| SinI | GGWCC | 2 cut(s) | 1175, 1756 |
| SlaI | CTCGAG | 1 cut(s) | 981 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 131, 804, 1839 |
| SmlI | CTYRAG | 3 cut(s) | 981, 1083, 1326 |
| SmoI | CTYRAG | 3 cut(s) | 981, 1083, 1326 |
| SpeI | ACTAGT | 1 cut(s) | 701 |
| SsiI | CCGC | 9 cut(s) | 181, 364, 367, 379, 758, 869, 962, 1242, 1901 |
| SspMI | CTAG | 3 cut(s) | 189, 702, 1745 |
| StyD4I | CCNGG | 2 cut(s) | 58, 499 |
| StyI | CCWWGG | 2 cut(s) | 411, 742 |
| TaaI | ACNGT | 6 cut(s) | 441, 797, 1179, 1357, 1639, 1714 |
| TaqI | TCGA | 3 cut(s) | 898, 982, 1437 |
| TaqII | GACCGA | 1 cut(s) | 625 |
| TatI | WGTACW | 3 cut(s) | 373, 968, 1070 |
| TauI | GCSGC | 4 cut(s) | 184, 367, 872, 1245 |
| TfiI | GAWTC | 5 cut(s) | 274, 560, 974, 1601, 1736 |
| Tru1I | TTAA | 4 cut(s) | 387, 582, 1299, 1821 |
| Tru9I | TTAA | 4 cut(s) | 387, 582, 1299, 1821 |
| TscAI | CASTG | 4 cut(s) | 120, 458, 1360, 1717 |
| TseFI | GTSAC | 2 cut(s) | 552, 1346 |
| TseI | GCWGC | 4 cut(s) | 924, 1026, 1230, 1512 |
| Tsp45I | GTSAC | 2 cut(s) | 552, 1346 |
| TspGWI | ACGGA | 1 cut(s) | 1142 |
| TspRI | CASTG | 4 cut(s) | 120, 458, 1360, 1717 |
| VpaK11BI | GGWCC | 2 cut(s) | 1175, 1756 |
| XapI | RAATTY | 5 cut(s) | 669, 881, 1167, 1390, 1762 |
| XceI | RCATGY | 1 cut(s) | 1838 |
| XhoI | CTCGAG | 1 cut(s) | 981 |
| XmnI | GAANNNNTTC | 3 cut(s) | 273, 661, 1134 |
| XspI | CTAG | 3 cut(s) | 189, 702, 1745 |
| Zsp2I | ATGCAT | 2 cut(s) | 81, 112 |