pycom05g22940

DCD

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
25056201 .. 25058319
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g22940.2

Sequence Viewer

Length: 1950 bp
ATGCGTTCTGATCTGAAGAATGAAAGAAGTGTATTTTCTCGCTTGGCTTCAGATACGCCTGGCAACGAGAATAGTATGCATACTGACTACGAGGAAAATGATAACGATGCATCAGTGGATGAAGTCATGGCAATGTTGAGTGCAAGTAACTACAGCTGGGTGAAATCAAAAAAATCTAAGCGGCCTACTAGACTGCACGATGACAAAGAGAAGTTTAGGAATAAGAAAAAGACCAAAGTGGACTCTGAGTTGGATAGTAATTACTTGGAATTGATTCCAAAGAAGTCAAACATGGCTTCTGCTACACGCGTTGAAGATGAAGATGATCAAAGGCGTGAAGAAATACCATTTGTGGATTTCAAGCGGCGGAGTGTACTGCGGAAACTTAATGGTGATACCAAAGCCAGAGCCAAGGATGAAAGTGCAGGAAATGATAGACTGTTGGGTGGGCAGTGCAAGAGAAGAAAGTTGGTCAGGCCGAGTTTCAATGACAATGAGCCAGGCGATGAAAAAAGCATAAATGGAAATACATCTCTGATTTTGCAAGCATCGTCACAAGAATCTTCCATTAGTGAAGATGTTAATGGCAAAAGAAGGAAGCTGGTTAGACCGAAGTTCAGGGTGAATGAGCAATGTGATGATAAAAGCATGAATGGAAACACTTCTAAAATTTTACAAGTATCATCTCAACAATGTTCTACTAGTGCAGATGGTGGAAGTTGTGAGGCTTCTGTTGGAAGCCAAGGTAAGTTGTTACCGCAAGGTACAGGTTTGTCGCTTGTGGTGTGTCAAAACAGTCATGAGAATGAGAATAATCAAACTGAAAGATCTTCAAAATATGAAAGAGAAATTGAAGTTGAAAGCTTTGCGGCATCAGTCAAATTCGGAGATGAAGGTCGAAAAGAGCCTCTTCATGATGTTGGCAGCCAAATTACTGACCTTGCAATCCCTAAGTTGTTACCGCAATGTACAGAATCGCCTCGAGTGGTTCACGAAGGTCAAAAAGAGCTTCTTCATGATGTTGGCAGCCAAATTGCTAACCTTGCAATTCCTAAGTTGTTACTGCAATGTACAGAATGGCCTCAAGTAGTTCATCAAAGCAGTCGTGAGAATGAGAATACTGAAACGGAAAGATTTCAAGAATATGAGCAGGAAAAAAAAAGGGAAATTTCCGGACCGTCTGTCAAAATTGAAGATGAAGGTGGAATGGAGTCTCTTCATGATCTTGGCAGCCCAATTGGCGGCCTTGCAATCCCATATAGAGACAAAAATCCTAATGTTCAGAAAGACTCGGATTTTAAGGTTCCTATTGTGCTCAAATCGTCTCAAGATTGTAATGATATCAGTCACATCACTGTTCAGGAGTCAGCCCTGCGATTACCTGAACAGAATTCTGGAACAGAAAATGCCTTTTCTGAAATTGAATGTGCAAGAGTCGATAAACTGGAGTTGCTTCCAAGATTTGAACTTTGTCCTGAAAGTGGTGATCTTAGTATCGGTAAAGTAATAGGCAGCTCAGGTAGTCTAAACTCTGGGTTGCATAGAGGAACCAAAGAAGTTGCTATTTGTGTAGATGCTGGTGTTGGTGATAACCAACATGAATCCAGTAATAAGCAGTCTGAGGCATCTCTTGACACCGTGAGTTGCTTGGACAAGCAAGAACCATCTAAAGATCACAGATCCAGTAAATTGTCTGAGGCACCTTTTGGCACTGTCGGTTGCTTCAAAAAGCCAGAATCTTGTCTAGGATTTCGGGACCTGAATTTGGGATTTGGAGAGCGACTTTTTATACTTAGTAATAGTTTCAAAAGCTATGATGTTAATGCTTCCAAGCATGTGGGTGAAAGGAGAGATGCTCTTCAAATCAGCGTGGTAGTAATGTTTGCAAAAGCATGGGTACCGCTGAGAATGTGGAAGAGAGGAAGGACTTTTTTCCAAGCAAGGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

650

Amino Acids

72.33

Weight (kDa)

5.95

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1897
AccB1I GGYRCC 2 cut(s) 1699, 1897
AccII CGCG 1 cut(s) 309
AccIII TCCGGA 1 cut(s) 1172
AciI CCGC 9 cut(s) 181, 364, 367, 379, 758, 869, 962, 1242, 1901
AclWI GGATC 1 cut(s) 1674
AcsI RAATTY 5 cut(s) 669, 881, 1167, 1390, 1762
AcuI CTGAAG 2 cut(s) 33, 35
AfaI GTAC 5 cut(s) 375, 766, 970, 1072, 1899
AfiI CCNNNNNNNGG 4 cut(s) 1241, 1481, 1765, 1942
AflIII ACRYGT 1 cut(s) 307
AhdI GACNNNNNGTC 1 cut(s) 1181
AhlI ACTAGT 1 cut(s) 701
AjnI CCWGG 2 cut(s) 58, 499
AluBI AGCT 6 cut(s) 156, 601, 864, 1009, 1515, 1812
AluI AGCT 6 cut(s) 156, 601, 864, 1009, 1515, 1812
Alw21I GWGCWC 1 cut(s) 1317
Alw26I GTCTC 3 cut(s) 1218, 1257, 1329
AlwI GGATC 1 cut(s) 1674
Ama87I CYCGRG 1 cut(s) 981
Aor13HI TCCGGA 1 cut(s) 1172
AoxI GGCC 4 cut(s) 182, 476, 1079, 1243
ApeKI GCWGC 4 cut(s) 924, 1026, 1230, 1512
ApoI RAATTY 5 cut(s) 669, 881, 1167, 1390, 1762
Asp700I GAANNNNTTC 3 cut(s) 273, 661, 1134
Asp718I GGTACC 1 cut(s) 1897
AspS9I GGNCC 2 cut(s) 1175, 1756
AsuHPI GGTGA 6 cut(s) 172, 404, 634, 1496, 1598, 1853
AvaI CYCGRG 1 cut(s) 981
AvaII GGWCC 2 cut(s) 1175, 1756
BanI GGYRCC 2 cut(s) 1699, 1897
Bbv12I GWGCWC 1 cut(s) 1317
BbvI GCAGC 4 cut(s) 936, 1038, 1242, 1524
BccI CCATC 2 cut(s) 704, 1672
BciT130I CCWGG 2 cut(s) 60, 501
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 3 cut(s) 1218, 1257, 1329
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 3 cut(s) 189, 702, 1745
BfmI CTRYAG 1 cut(s) 151
BglI GCCNNNNNGGC 1 cut(s) 1239
BglII AGATCT 1 cut(s) 827
BisI GCNGC 8 cut(s) 182, 365, 870, 925, 1027, 1231, 1243, 1513
BlsI GCNGC 8 cut(s) 183, 366, 871, 926, 1028, 1232, 1244, 1514
Bme1390I CCNGG 2 cut(s) 60, 501
Bme18I GGWCC 2 cut(s) 1175, 1756
BmeRI GACNNNNNGTC 1 cut(s) 1181
BmeT110I CYCGRG 1 cut(s) 981
BmgT120I GGNCC 2 cut(s) 1175, 1756
BmiI GGNNCC 5 cut(s) 1305, 1549, 1701, 1757, 1899
BmrFI CCNGG 2 cut(s) 60, 501
BmsI GCATC 7 cut(s) 97, 119, 557, 881, 1564, 1634, 1843
BplI GAGNNNNNCTC 2 cut(s) 1840, 1872
BpmI CTGGAG 1 cut(s) 1466
Bpu10I CCTNAGC 1 cut(s) 1516
BpuEI CTTGAG 2 cut(s) 1068, 1311
BsaJI CCNNGG 2 cut(s) 411, 742
BsaWI WCCGGW 1 cut(s) 1172
Bsc4I CCNNNNNNNGG 4 cut(s) 1241, 1481, 1765, 1942
Bse1I ACTGG 3 cut(s) 1449, 1605, 1683
Bse3DI GCAATG 4 cut(s) 138, 638, 971, 1073
BseAI TCCGGA 1 cut(s) 1172
BseBI CCWGG 2 cut(s) 60, 501
BseDI CCNNGG 2 cut(s) 411, 742
BseGI GGATG 2 cut(s) 124, 421
BseLI CCNNNNNNNGG 4 cut(s) 1241, 1481, 1765, 1942
BseMI GCAATG 4 cut(s) 138, 638, 971, 1073
BseMII CTCAG 5 cut(s) 237, 1530, 1611, 1686, 1895
BseNI ACTGG 3 cut(s) 1449, 1605, 1683
BseXI GCAGC 4 cut(s) 936, 1038, 1242, 1524
BseYI CCCAGC 1 cut(s) 156
BsgI GTGCAG 3 cut(s) 179, 444, 726
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 4 cut(s) 184, 478, 1081, 1245
BshNI GGYRCC 2 cut(s) 1699, 1897
BsiHKAI GWGCWC 1 cut(s) 1317
BsiHKCI CYCGRG 1 cut(s) 981
BsiSI CCGG 1 cut(s) 1173
BslFI GGGAC 1 cut(s) 1769
BslI CCNNNNNNNGG 4 cut(s) 1241, 1481, 1765, 1942
BsmAI GTCTC 3 cut(s) 1218, 1257, 1329
BsmBI CGTCTC 1 cut(s) 1329
BsmFI GGGAC 1 cut(s) 1769
BsnI GGCC 4 cut(s) 184, 478, 1081, 1245
BsoBI CYCGRG 1 cut(s) 981
Bsp1286I GDGCHC 1 cut(s) 1317
Bsp13I TCCGGA 1 cut(s) 1172
Bsp1407I TGTACA 2 cut(s) 968, 1070
Bsp143I GATC 7 cut(s) 10, 325, 827, 1222, 1486, 1672, 1679
BspACI CCGC 9 cut(s) 181, 364, 367, 379, 758, 869, 962, 1242, 1901
BspANI GGCC 4 cut(s) 184, 478, 1081, 1245
BspCNI CTCAG 5 cut(s) 238, 1529, 1612, 1687, 1896
BspEI TCCGGA 1 cut(s) 1172
BspFNI CGCG 1 cut(s) 309
BspHI TCATGA 4 cut(s) 799, 913, 1015, 1219
BspLI GGNNCC 5 cut(s) 1305, 1549, 1701, 1757, 1899
BspPI GGATC 1 cut(s) 1674
BspQI GCTCTTC 1 cut(s) 1863
BspT107I GGYRCC 2 cut(s) 1699, 1897
BsrDI GCAATG 4 cut(s) 138, 638, 971, 1073
BsrGI TGTACA 2 cut(s) 968, 1070
BsrI ACTGG 3 cut(s) 1449, 1605, 1683
BssECI CCNNGG 2 cut(s) 411, 742
BssMI GATC 7 cut(s) 10, 325, 827, 1222, 1486, 1672, 1679
BssT1I CCWWGG 2 cut(s) 411, 742
Bst2UI CCWGG 2 cut(s) 60, 501
Bst4CI ACNGT 6 cut(s) 441, 797, 1179, 1357, 1639, 1714
Bst6I CTCTTC 4 cut(s) 915, 1221, 1863, 1910
BstAUI TGTACA 2 cut(s) 968, 1070
BstC8I GCNNGC 1 cut(s) 546
BstF5I GGATG 2 cut(s) 124, 421
BstFNI CGCG 1 cut(s) 309
BstKTI GATC 7 cut(s) 13, 328, 830, 1225, 1489, 1675, 1682
BstMAI GTCTC 3 cut(s) 1218, 1257, 1329
BstMBI GATC 7 cut(s) 10, 325, 827, 1222, 1486, 1672, 1679
BstMWI GCNNNNNNNGC 2 cut(s) 1043, 1239
BstNI CCWGG 2 cut(s) 60, 501
BstNSI RCATGY 1 cut(s) 1838
BstSCI CCNGG 2 cut(s) 58, 499
BstSFI CTRYAG 1 cut(s) 151
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 4 cut(s) 936, 1038, 1242, 1524
BstX2I RGATCY 2 cut(s) 827, 1679
BstXI CCANNNNNNTGG 1 cut(s) 1837
BstYI RGATCY 2 cut(s) 827, 1679
BsuRI GGCC 4 cut(s) 184, 478, 1081, 1245
BtgZI GCGATG 1 cut(s) 519
BtsCI GGATG 2 cut(s) 124, 421
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 4 cut(s) 120, 458, 1353, 1710
Cac8I GCNNGC 1 cut(s) 546
CciI TCATGA 4 cut(s) 799, 913, 1015, 1219
Cfr13I GGNCC 2 cut(s) 1175, 1756
CpoI CGGWCCG 1 cut(s) 1175
Csp6I GTAC 5 cut(s) 374, 765, 969, 1071, 1898
CspI CGGWCCG 1 cut(s) 1175
CviQI GTAC 5 cut(s) 374, 765, 969, 1071, 1898
DpnI GATC 7 cut(s) 12, 327, 829, 1224, 1488, 1674, 1681
DpnII GATC 7 cut(s) 10, 325, 827, 1222, 1486, 1672, 1679
DriI GACNNNNNGTC 1 cut(s) 1181
Eam1104I CTCTTC 4 cut(s) 915, 1221, 1863, 1910
Eam1105I GACNNNNNGTC 1 cut(s) 1181
EarI CTCTTC 4 cut(s) 915, 1221, 1863, 1910
EciI GGCGGA 1 cut(s) 382
Eco130I CCWWGG 2 cut(s) 411, 742
Eco32I GATATC 1 cut(s) 1342
Eco47I GGWCC 2 cut(s) 1175, 1756
Eco57I CTGAAG 2 cut(s) 33, 35
Eco88I CYCGRG 1 cut(s) 981
EcoO109I RGGNCCY 1 cut(s) 1756
EcoRI GAATTC 1 cut(s) 1390
EcoRII CCWGG 2 cut(s) 58, 499
EcoRV GATATC 1 cut(s) 1342
EcoT14I CCWWGG 2 cut(s) 411, 742
EcoT22I ATGCAT 2 cut(s) 81, 112
ErhI CCWWGG 2 cut(s) 411, 742
Esp3I CGTCTC 1 cut(s) 1329
FalI AAGNNNNNCTT 4 cut(s) 894, 926, 996, 1028
FaqI GGGAC 1 cut(s) 1769
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 8 cut(s) 182, 365, 870, 925, 1027, 1231, 1243, 1513
FokI GGATG 2 cut(s) 131, 428
Fsp4HI GCNGC 8 cut(s) 182, 365, 870, 925, 1027, 1231, 1243, 1513
FspBI CTAG 3 cut(s) 189, 702, 1745
GluI GCNGC 8 cut(s) 182, 365, 870, 925, 1027, 1231, 1243, 1513
GsaI CCCAGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 1466
HaeIII GGCC 4 cut(s) 184, 478, 1081, 1245
HapII CCGG 1 cut(s) 1173
HindIII AAGCTT 1 cut(s) 862
HpaII CCGG 1 cut(s) 1173
HphI GGTGA 6 cut(s) 172, 404, 634, 1496, 1598, 1853
Hpy166II GTNNAC 3 cut(s) 241, 374, 991
Hpy8I GTNNAC 3 cut(s) 241, 374, 991
HpyAV CCTTC 5 cut(s) 588, 887, 989, 1193, 1917
HpyCH4III ACNGT 6 cut(s) 441, 797, 1179, 1357, 1639, 1714
HpyF10VI GCNNNNNNNGC 2 cut(s) 1043, 1239
Kpn2I TCCGGA 1 cut(s) 1172
KpnI GGTACC 1 cut(s) 1901
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 7 cut(s) 10, 325, 827, 1222, 1486, 1672, 1679
LguI GCTCTTC 1 cut(s) 1863
Lsp1109I GCAGC 4 cut(s) 936, 1038, 1242, 1524
LweI GCATC 7 cut(s) 97, 119, 557, 881, 1564, 1634, 1843
MaeI CTAG 3 cut(s) 189, 702, 1745
MaeIII GTNAC 6 cut(s) 146, 552, 753, 957, 1059, 1346
MalI GATC 7 cut(s) 12, 327, 829, 1224, 1488, 1674, 1681
MboI GATC 7 cut(s) 10, 325, 827, 1222, 1486, 1672, 1679
MfeI CAATTG 1 cut(s) 1236
MflI RGATCY 2 cut(s) 827, 1679
MhlI GDGCHC 1 cut(s) 1317
MluI ACGCGT 1 cut(s) 307
MlyI GAGTC 5 cut(s) 236, 1220, 1283, 1373, 1443
MmeI TCCRAC 2 cut(s) 231, 715
MnlI CCTC 9 cut(s) 85, 718, 918, 990, 1092, 1538, 1615, 1690, 1913
Mph1103I ATGCAT 2 cut(s) 81, 112
MroI TCCGGA 1 cut(s) 1172
MroXI GAANNNNTTC 3 cut(s) 273, 661, 1134
MseI TTAA 4 cut(s) 387, 582, 1299, 1821
MslI CAYNNNNRTG 3 cut(s) 131, 804, 1839
MspA1I CMGCKG 2 cut(s) 156, 1903
MspI CCGG 1 cut(s) 1173
MspR9I CCNGG 2 cut(s) 60, 501
MunI CAATTG 1 cut(s) 1236
MvaI CCWGG 2 cut(s) 60, 501
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 1043, 1239
NdeII GATC 7 cut(s) 10, 325, 827, 1222, 1486, 1672, 1679
NlaIV GGNNCC 5 cut(s) 1305, 1549, 1701, 1757, 1899
NmeAIII GCCGAG 1 cut(s) 504
NmuCI GTSAC 2 cut(s) 552, 1346
NsiI ATGCAT 2 cut(s) 81, 112
NspI RCATGY 1 cut(s) 1838
PaeR7I CTCGAG 1 cut(s) 981
PagI TCATGA 4 cut(s) 799, 913, 1015, 1219
PciSI GCTCTTC 1 cut(s) 1863
PdmI GAANNNNTTC 3 cut(s) 273, 661, 1134
PfeI GAWTC 5 cut(s) 274, 560, 974, 1601, 1736
PkrI GCNGC 8 cut(s) 183, 366, 871, 926, 1028, 1232, 1244, 1514
PleI GAGTC 5 cut(s) 236, 1219, 1283, 1372, 1442
PpsI GAGTC 5 cut(s) 236, 1219, 1283, 1372, 1442
PpuMI RGGWCCY 1 cut(s) 1756
Psp5II RGGWCCY 1 cut(s) 1756
Psp6I CCWGG 2 cut(s) 58, 499
PspFI CCCAGC 1 cut(s) 156
PspGI CCWGG 2 cut(s) 58, 499
PspN4I GGNNCC 5 cut(s) 1305, 1549, 1701, 1757, 1899
PspPI GGNCC 2 cut(s) 1175, 1756
PspPPI RGGWCCY 1 cut(s) 1756
PspXI VCTCGAGB 1 cut(s) 981
PsuI RGATCY 2 cut(s) 827, 1679
PvuII CAGCTG 1 cut(s) 156
RsaI GTAC 5 cut(s) 375, 766, 970, 1072, 1899
RsaNI GTAC 5 cut(s) 374, 765, 969, 1071, 1898
RseI CAYNNNNRTG 3 cut(s) 131, 804, 1839
Rsr2I CGGWCCG 1 cut(s) 1175
RsrII CGGWCCG 1 cut(s) 1175
SapI GCTCTTC 1 cut(s) 1863
SaqAI TTAA 4 cut(s) 387, 582, 1299, 1821
SatI GCNGC 8 cut(s) 182, 365, 870, 925, 1027, 1231, 1243, 1513
Sau3AI GATC 7 cut(s) 10, 325, 827, 1222, 1486, 1672, 1679
Sau96I GGNCC 2 cut(s) 1175, 1756
SchI GAGTC 5 cut(s) 236, 1220, 1283, 1373, 1443
ScrFI CCNGG 2 cut(s) 60, 501
SduI GDGCHC 1 cut(s) 1317
SfaNI GCATC 7 cut(s) 97, 119, 557, 881, 1564, 1634, 1843
SfcI CTRYAG 1 cut(s) 151
Sfr274I CTCGAG 1 cut(s) 981
SinI GGWCC 2 cut(s) 1175, 1756
SlaI CTCGAG 1 cut(s) 981
SmiMI CAYNNNNRTG 3 cut(s) 131, 804, 1839
SmlI CTYRAG 3 cut(s) 981, 1083, 1326
SmoI CTYRAG 3 cut(s) 981, 1083, 1326
SpeI ACTAGT 1 cut(s) 701
SsiI CCGC 9 cut(s) 181, 364, 367, 379, 758, 869, 962, 1242, 1901
SspMI CTAG 3 cut(s) 189, 702, 1745
StyD4I CCNGG 2 cut(s) 58, 499
StyI CCWWGG 2 cut(s) 411, 742
TaaI ACNGT 6 cut(s) 441, 797, 1179, 1357, 1639, 1714
TaqI TCGA 3 cut(s) 898, 982, 1437
TaqII GACCGA 1 cut(s) 625
TatI WGTACW 3 cut(s) 373, 968, 1070
TauI GCSGC 4 cut(s) 184, 367, 872, 1245
TfiI GAWTC 5 cut(s) 274, 560, 974, 1601, 1736
Tru1I TTAA 4 cut(s) 387, 582, 1299, 1821
Tru9I TTAA 4 cut(s) 387, 582, 1299, 1821
TscAI CASTG 4 cut(s) 120, 458, 1360, 1717
TseFI GTSAC 2 cut(s) 552, 1346
TseI GCWGC 4 cut(s) 924, 1026, 1230, 1512
Tsp45I GTSAC 2 cut(s) 552, 1346
TspGWI ACGGA 1 cut(s) 1142
TspRI CASTG 4 cut(s) 120, 458, 1360, 1717
VpaK11BI GGWCC 2 cut(s) 1175, 1756
XapI RAATTY 5 cut(s) 669, 881, 1167, 1390, 1762
XceI RCATGY 1 cut(s) 1838
XhoI CTCGAG 1 cut(s) 981
XmnI GAANNNNTTC 3 cut(s) 273, 661, 1134
XspI CTAG 3 cut(s) 189, 702, 1745
Zsp2I ATGCAT 2 cut(s) 81, 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.