Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003630

Physical Location & Seq

Genomic Coordinates Reverse (-)

56202567 .. 56203785

Gene Structure 1219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40070

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGTTGCTCATAATACTTTTTCATCTTATCTTGGTTATGCTGCACCAATTGATGAAAGTGGAAAGGATCTTGTGCATTATGTTGGTAGCCAAATTGCCATCGTCCCTTCCAAAGATGATATCCTTTATACACAAGTAGACTCAAATCATAAAGACCATATGGTGTTGTCTCGAGTTGGTCATCTGCATATTCACTCCACCATGATTGAATCATCTTTGCAACCTAAGACCAATGCTGCAACAAGAAATGGATTCTCTGAAACTGAAAATGACAAAGACAGAAAACTAGAGGTGCTTTCAAGGGATGATGTTTCTCCAAACACAATTGGTAAAGGTGGCTCCAAGAAGCGAAAGTTTGATTCCCCAGGAGTAGCTGAAAACATCTTTAATAGCGTGGCTACTAGCATTGAGCAGGTCCAGACACAACCTCAATTTGATTATGGTCAGGACACTATGGATCAAGCATATATTCAGCATTTCATGCTTACCAAGGCCACAAATAAAATTGCCAAGAAGCTGACATTTCAAGATTTGTGTGCTTATGATGAGTCTGCATACTTCAATGGCTTTACTTCTGTACTGAATGTTCAAGATGCTACCGAACCAAAGACCTCTAAAGCTACTGTTAGAAAATCAGAGTGGGATTCTACTATGAATAAAGAACTTGGCCTCAGAAAGCAAGGGATAAGTTACTGGAGTAATGAGGTGTTCCTCTGTAAAGAAAAATATGCAAAGGATTTGATTCACAGAACTGGTATGGCTACATCAAGAGCTGGTATGCTAAGCATTTTCATGTTGTTAGAGAAAGAGTGCAAAGGTATGATCTGCTGTTACTTCAATATGTTTCTATTACTGAGCATTCTGAAGATATTCTTGCCAAAGGTTTCTACAAGCTTTGTATTCAGTATACCTTGCTCCAATCTCATTGTGCTCACCCCCACTGAGATTGAGGGGAGGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

35.93

Weight (kDa)

7.1

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140
fragaria_vesca	FvH4_3g12300 FvH4_3g12300 FvH4_3g12300
malus_domestica	MD04G1011100.v1.1 MD05G1251600.v1.1 MD10G1232100.v1.1
prunus_persica	Prupe.4G112100_v2.0.a1 Prupe.4G112100_v2.0.a1
pyrus_communis	pycom05g22930 pycom05g22940 pycom05g22950 pycom10g19540
rosa_chinensis	RchiOBHm_Chr4g0432061 RchiOBHm_Chr5g0020111
rosa_laevigata	RLG00000032500
rosa_multiflora	Rmu_sc0002012.1_g000001 Rmu_sc0004769.1_g000009 Rmu_sc0040673.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058090
rosa_rugosa	Rorug01G0143900.1 Rorug05G0057000 Rorug05G0057100 Rorug05G0057200
rosa_samantha	Rh5AG147100 Rh5BG146600 Rh5BG416600 Rh5CG158200 Rh5DG146100
rosa_wichuraiana	Rw5G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	403
AccI	GTMKAC	2 cut(s)	138, 907
AclWI	GGATC	2 cut(s)	75, 465
AcuI	CTGAAG	1 cut(s)	884
AfaI	GTAC	1 cut(s)	579
AgsI	TTSAA	6 cut(s)	209, 300, 527, 562, 590, 838
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	5 cut(s)	374, 517, 620, 773, 894
AluI	AGCT	5 cut(s)	374, 517, 620, 773, 894
Alw21I	GWGCWC	1 cut(s)	933
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	75, 465
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	2 cut(s)	492, 667
ApeKI	GCWGC	2 cut(s)	41, 236
Asp700I	GAANNNNTTC	1 cut(s)	869
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	925
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	933
BbvI	GCAGC	2 cut(s)	28, 223
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	287, 402
BfuAI	ACCTGC	1 cut(s)	403
BisI	GCNGC	2 cut(s)	42, 237
BlpI	GCTNAGC	1 cut(s)	782
BlsI	GCNGC	2 cut(s)	43, 238
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	583
BpmI	CTGGAG	1 cut(s)	715
Bpu1102I	GCTNAGC	1 cut(s)	782
BsaJI	CCNNGG	2 cut(s)	364, 489
Bse1I	ACTGG	2 cut(s)	698, 757
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	364, 489
BseGI	GGATG	1 cut(s)	310
BseMII	CTCAG	3 cut(s)	685, 845, 933
BseNI	ACTGG	2 cut(s)	698, 757
BseXI	GCAGC	2 cut(s)	28, 223
BsgI	GTGCAG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	494, 669
BsiHKAI	GWGCWC	1 cut(s)	933
BsiHKCI	CYCGRG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	858
BsnI	GGCC	2 cut(s)	494, 669
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	933
Bsp143I	GATC	3 cut(s)	67, 457, 822
Bsp1720I	GCTNAGC	1 cut(s)	782
BspANI	GGCC	2 cut(s)	494, 669
BspCNI	CTCAG	3 cut(s)	684, 846, 934
BspLI	GGNNCC	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	75, 465
BsrI	ACTGG	2 cut(s)	698, 757
BssECI	CCNNGG	2 cut(s)	364, 489
BssMI	GATC	3 cut(s)	67, 457, 822
BssNAI	GTATAC	1 cut(s)	908
BssT1I	CCWWGG	1 cut(s)	489
Bst1107I	GTATAC	1 cut(s)	908
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	625
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstDEI	CTNAG	5 cut(s)	225, 671, 782, 854, 942
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	70, 460, 825
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	3 cut(s)	67, 457, 822
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstV1I	GCAGC	2 cut(s)	28, 223
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BstZ17I	GTATAC	1 cut(s)	908
BsuRI	GGCC	2 cut(s)	494, 669
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	939
BveI	ACCTGC	1 cut(s)	403
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	578
CspCI	CAANNNNNGTGG	4 cut(s)	187, 222, 928, 963
CviAII	CATG	3 cut(s)	202, 481, 793
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	5 cut(s)	225, 671, 782, 854, 942
DpnI	GATC	3 cut(s)	69, 459, 824
DpnII	GATC	3 cut(s)	67, 457, 822
Eco130I	CCWWGG	1 cut(s)	489
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	884
Eco88I	CYCGRG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	3 cut(s)	205, 484, 796
FalI	AAGNNNNNCTT	2 cut(s)	857, 889
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	201, 480, 792
FauNDI	CATATG	1 cut(s)	159
FblI	GTMKAC	2 cut(s)	138, 907
Fnu4HI	GCNGC	2 cut(s)	42, 237
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	2 cut(s)	42, 237
FspBI	CTAG	2 cut(s)	287, 402
GluI	GCNGC	2 cut(s)	42, 237
GsuI	CTGGAG	1 cut(s)	715
HaeIII	GGCC	2 cut(s)	494, 669
Hin1II	CATG	3 cut(s)	205, 484, 796
HindIII	AAGCTT	1 cut(s)	892
HinfI	GANTC	7 cut(s)	140, 209, 252, 359, 548, 644, 742
HphI	GGTGA	1 cut(s)	925
Hpy166II	GTNNAC	2 cut(s)	139, 908
Hpy188I	TCNGA	4 cut(s)	259, 637, 674, 864
Hpy188III	TCNNGA	6 cut(s)	171, 418, 446, 527, 590, 768
Hpy8I	GTNNAC	2 cut(s)	139, 908
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4V	TGCA	8 cut(s)	44, 76, 187, 220, 239, 554, 731, 813
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	5 cut(s)	225, 671, 782, 854, 942
Hsp92II	CATG	3 cut(s)	205, 484, 796
Kzo9I	GATC	3 cut(s)	67, 457, 822
LmnI	GCTCC	2 cut(s)	344, 920
LpnPI	CCDG	8 cut(s)	351, 378, 398, 431, 431, 679, 738, 759
Lsp1109I	GCAGC	2 cut(s)	28, 223
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	2 cut(s)	287, 402
MaeIII	GTNAC	2 cut(s)	689, 830
MalI	GATC	3 cut(s)	69, 459, 824
MboI	GATC	3 cut(s)	67, 457, 822
MboII	GAAGA	1 cut(s)	877
MfeI	CAATTG	2 cut(s)	48, 324
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	933
MluCI	AATT	5 cut(s)	48, 93, 324, 431, 504
MlyI	GAGTC	2 cut(s)	134, 557
MnlI	CCTC	8 cut(s)	283, 438, 622, 680, 697, 722, 943, 948
MroXI	GAANNNNTTC	1 cut(s)	869
MseI	TTAA	2 cut(s)	387, 961
MslI	CAYNNNNRTG	1 cut(s)	791
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	2 cut(s)	48, 324
Mva1269I	GAATGC	1 cut(s)	858
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	481
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	3 cut(s)	67, 457, 822
NlaIII	CATG	3 cut(s)	205, 484, 796
NlaIV	GGNNCC	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	171
PctI	GAATGC	1 cut(s)	858
PdmI	GAANNNNTTC	1 cut(s)	869
PfeI	GAWTC	5 cut(s)	209, 252, 359, 644, 742
PkrI	GCNGC	2 cut(s)	43, 238
PleI	GAGTC	2 cut(s)	134, 556
PpsI	GAGTC	2 cut(s)	134, 556
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	415
PsrI	GAACNNNNNNTAC	2 cut(s)	570, 602
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	791
SaqAI	TTAA	2 cut(s)	387, 961
SatI	GCNGC	2 cut(s)	42, 237
Sau3AI	GATC	3 cut(s)	67, 457, 822
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	134, 557
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	933
SfaNI	GCATC	1 cut(s)	583
Sfr274I	CTCGAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	415
SlaI	CTCGAG	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	791
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	5 cut(s)	48, 93, 324, 431, 504
SspMI	CTAG	2 cut(s)	287, 402
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	625
TaqI	TCGA	1 cut(s)	172
TasI	AATT	5 cut(s)	48, 93, 324, 431, 504
TatI	WGTACW	1 cut(s)	577
TfiI	GAWTC	5 cut(s)	209, 252, 359, 644, 742
Tru1I	TTAA	2 cut(s)	387, 961
Tru9I	TTAA	2 cut(s)	387, 961
TscAI	CASTG	1 cut(s)	946
TseI	GCWGC	2 cut(s)	41, 236
TspDTI	ATGAA	5 cut(s)	12, 69, 469, 668, 781
TspRI	CASTG	1 cut(s)	946
VpaK11BI	GGWCC	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	171
XmiI	GTMKAC	2 cut(s)	138, 907
XmnI	GAANNNNTTC	1 cut(s)	869
XspI	CTAG	2 cut(s)	287, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.