Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004769.1

Orthogroup ID

OG0003630

Physical Location & Seq

Genomic Coordinates Forward (+)

30459 .. 31784

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004769.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ctgtacacaattcagaaaggtaatgataccatagacaagtattttcagcgtatcaaagacattactgatcagttaacttctgttggtattcatattcccgatgaagagattattatcatttctgttaatggccttccctctgagtacatgactatcaaaattgtggtcaaagctctgatcacaactaagtcaatgaacaaattgcattctcttttacttgatgaggagtctactattgatcaatctacaaagactatgcagaatagaatgcctactgttatcaattctagtgtcatttctagtatacctactttcaatcactacaacacaccaatcacctctactgtgcatcactttaatgctcaatcacctagttctactacgcactttgggataccacagaatgacatgatctcaaatgctgctatcaatatgcctaatgctgcctctattaatgtgcctaatgctgcctcaagttgtcaagacatgattctgcgttctaccaattttggtgcctctcagacaatacctaattctggatacatgttgaataacaatgttggtaatggaaactactttcctgcacctaccctttcttatggctatgcacctcaaactgatggtttcatacctcaaaatggcacctttataacttcaaatgggagattcatggctcagaatggtggttacactcctggttttcaacataactactctcagcaaggtttctctcagaacaatgtgtcacagcagcaaggttctctttcacaacaacagggctctttttcacaagctctaaacaacaactctaagaatggtccaacagcgatggttgatcataatagcttcaataactttcaggttacattattacactcaagctcatctcatcttgattctgttgtaccaattgatactcaaatatttccaacatccaaaatggaaattaaactagaaagctctggggaatctttcataattgcagatgaaagtggaaaggatcctgtgcatgatgttggcagccaaattaccatcgtcccttccaaagatagtatcctttatgcacaagaagattcatatcataaggagcctatggtgttatctggagatggttatgagctcagtcagtccaccgtgctagagtcagctttggaacctaggacaaatgctgcaacaagaaatggattttctgaaattgaaaatgacaaaggtagtaaactggaagtgctttcaaggtttgaactttctccaaacatagttggcaaaggtggcgaaagcagaactctaagtcaccaagactacctgaaaacgtctctaatcgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_21 rve

Protein Analysis

441

Amino Acids

48.12

Weight (kDa)

5.32

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140 AT2G35140
fragaria_vesca	FvH4_3g12300 FvH4_3g12300 FvH4_3g12300
malus_domestica	MD04G1011100.v1.1 MD05G1251600.v1.1 MD10G1232100.v1.1
prunus_persica	Prupe.4G112100_v2.0.a1 Prupe.4G112100_v2.0.a1
pyrus_communis	pycom05g22930 pycom05g22940 pycom05g22950 pycom10g19540
rosa_chinensis	RchiOBHm_Chr4g0432061 RchiOBHm_Chr5g0020111
rosa_laevigata	RLG00000032500
rosa_multiflora	Rmu_sc0002012.1_g000001 Rmu_sc0004769.1_g000009 Rmu_sc0040673.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058090
rosa_rugosa	Rorug01G0143900.1 Rorug05G0057000 Rorug05G0057100 Rorug05G0057200
rosa_samantha	Rh5AG147100 Rh5BG146600 Rh5BG416600 Rh5CG158200 Rh5DG146100
rosa_wichuraiana	Rw5G013000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
AccB1I	GGYRCC	2 cut(s)	512, 641
AccI	GTMKAC	2 cut(s)	230, 304
AclWI	GGATC	2 cut(s)	995, 1008
AfaI	GTAC	3 cut(s)	5, 146, 906
AfiI	CCNNNNNNNGG	2 cut(s)	536, 638
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	8 cut(s)	316, 550, 657, 704, 850, 1199, 1233, 1241
AjnI	CCWGG	1 cut(s)	694
AluBI	AGCT	7 cut(s)	173, 794, 846, 882, 960, 1120, 1148
AluI	AGCT	7 cut(s)	173, 794, 846, 882, 960, 1120, 1148
Alw21I	GWGCWC	1 cut(s)	1122
Alw26I	GTCTC	1 cut(s)	1317
AlwI	GGATC	2 cut(s)	995, 1008
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	6 cut(s)	422, 443, 467, 751, 1020, 1169
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AseI	ATTAAT	1 cut(s)	453
AspA2I	CCTAGG	1 cut(s)	1157
AspS9I	GGNCC	1 cut(s)	818
AsuHPI	GGTGA	3 cut(s)	328, 360, 1283
AvaII	GGWCC	1 cut(s)	818
AvrII	CCTAGG	1 cut(s)	1157
BamHI	GGATCC	1 cut(s)	1000
BanI	GGYRCC	2 cut(s)	512, 641
BanII	GRGCYC	2 cut(s)	782, 1122
Bbv12I	GWGCWC	1 cut(s)	1122
BbvI	GCAGC	6 cut(s)	409, 430, 454, 763, 1032, 1156
BccI	CCATC	4 cut(s)	614, 823, 1040, 1103
BciT130I	CCWGG	1 cut(s)	696
BciVI	GTATCC	3 cut(s)	387, 533, 1064
BclI	TGATCA	4 cut(s)	67, 177, 238, 835
BcoDI	GTCTC	1 cut(s)	1317
BfaI	CTAG	6 cut(s)	288, 300, 372, 953, 1139, 1158
BfuI	GTATCC	3 cut(s)	387, 533, 1064
BisI	GCNGC	6 cut(s)	423, 444, 468, 752, 1021, 1170
BlnI	CCTAGG	1 cut(s)	1157
BlsI	GCNGC	6 cut(s)	424, 445, 469, 753, 1022, 1171
Bme1390I	CCNGG	1 cut(s)	696
Bme18I	GGWCC	1 cut(s)	818
BmgT120I	GGNCC	1 cut(s)	818
BmiI	GGNNCC	5 cut(s)	514, 643, 1002, 1089, 1155
BmrFI	CCNGG	1 cut(s)	696
BmsI	GCATC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	1125
BpuEI	CTTGAG	2 cut(s)	457, 862
BsaBI	GATNNNNATC	2 cut(s)	113, 1077
BsaJI	CCNNGG	1 cut(s)	1157
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 638
Bse1I	ACTGG	1 cut(s)	1224
Bse8I	GATNNNNATC	2 cut(s)	113, 1077
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	1 cut(s)	1157
BseGI	GGATG	1 cut(s)	932
BseJI	GATNNNNATC	2 cut(s)	113, 1077
BseLI	CCNNNNNNNGG	2 cut(s)	536, 638
BseMII	CTCAG	6 cut(s)	132, 533, 689, 731, 746, 1135
BseNI	ACTGG	1 cut(s)	1224
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	6 cut(s)	409, 430, 454, 763, 1032, 1156
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	2 cut(s)	512, 641
BsiHKAI	GWGCWC	1 cut(s)	1122
BslFI	GGGAC	1 cut(s)	1022
BslI	CCNNNNNNNGG	2 cut(s)	536, 638
BsmAI	GTCTC	1 cut(s)	1317
BsmBI	CGTCTC	1 cut(s)	1317
BsmFI	GGGAC	1 cut(s)	1022
BsmI	GAATGC	2 cut(s)	205, 273
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	782, 1122
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	6 cut(s)	67, 177, 238, 411, 835, 1000
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	6 cut(s)	133, 532, 688, 730, 745, 1134
BspLI	GGNNCC	5 cut(s)	514, 643, 1002, 1089, 1155
BspPI	GGATC	2 cut(s)	995, 1008
BspT107I	GGYRCC	2 cut(s)	512, 641
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	1224
BssECI	CCNNGG	1 cut(s)	1157
BssMI	GATC	6 cut(s)	67, 177, 238, 411, 835, 1000
BssNAI	GTATAC	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	1157
Bst1107I	GTATAC	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	3 cut(s)	277, 346, 1135
Bst6I	CTCTTC	1 cut(s)	99
BstAUI	TGTACA	1 cut(s)	3
BstDEI	CTNAG	9 cut(s)	141, 186, 519, 675, 717, 732, 810, 1121, 1286
BstF5I	GGATG	1 cut(s)	932
BstKTI	GATC	6 cut(s)	70, 180, 241, 414, 838, 1003
BstMAI	GTCTC	1 cut(s)	1317
BstMBI	GATC	6 cut(s)	67, 177, 238, 411, 835, 1000
BstMWI	GCNNNNNNNGC	1 cut(s)	1269
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	694
BstV1I	GCAGC	6 cut(s)	409, 430, 454, 763, 1032, 1156
BstX2I	RGATCY	1 cut(s)	1000
BstYI	RGATCY	1 cut(s)	1000
BstZ17I	GTATAC	1 cut(s)	305
BsuI	GTATCC	3 cut(s)	387, 533, 1064
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	1 cut(s)	842
BtsCI	GGATG	1 cut(s)	932
Cfr13I	GGNCC	1 cut(s)	818
Csp6I	GTAC	3 cut(s)	4, 145, 905
CviAII	CATG	7 cut(s)	148, 409, 487, 544, 670, 1010, 1323
CviQI	GTAC	3 cut(s)	4, 145, 905
DdeI	CTNAG	9 cut(s)	141, 186, 519, 675, 717, 732, 810, 1121, 1286
DpnI	GATC	6 cut(s)	69, 179, 240, 413, 837, 1002
DpnII	GATC	6 cut(s)	67, 177, 238, 411, 835, 1000
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	1120
Eco130I	CCWWGG	1 cut(s)	1157
Eco24I	GRGCYC	2 cut(s)	782, 1122
Eco47I	GGWCC	1 cut(s)	818
Eco53kI	GAGCTC	1 cut(s)	1120
EcoICRI	GAGCTC	1 cut(s)	1120
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	1157
EcoT38I	GRGCYC	2 cut(s)	782, 1122
ErhI	CCWWGG	1 cut(s)	1157
Esp3I	CGTCTC	1 cut(s)	1317
FaeI	CATG	7 cut(s)	151, 412, 490, 547, 673, 1013, 1326
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	1 cut(s)	1022
FatI	CATG	7 cut(s)	147, 408, 486, 543, 669, 1009, 1322
FbaI	TGATCA	4 cut(s)	67, 177, 238, 835
FblI	GTMKAC	2 cut(s)	230, 304
Fnu4HI	GCNGC	6 cut(s)	423, 444, 468, 752, 1021, 1170
FokI	GGATG	1 cut(s)	919
FriOI	GRGCYC	2 cut(s)	782, 1122
Fsp4HI	GCNGC	6 cut(s)	423, 444, 468, 752, 1021, 1170
FspBI	CTAG	6 cut(s)	288, 300, 372, 953, 1139, 1158
GluI	GCNGC	6 cut(s)	423, 444, 468, 752, 1021, 1170
GsuI	CTGGAG	1 cut(s)	1125
HaeIII	GGCC	1 cut(s)	132
Hin1II	CATG	7 cut(s)	151, 412, 490, 547, 673, 1013, 1326
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	7 cut(s)	227, 490, 666, 896, 968, 1073, 1142
HpaI	GTTAAC	1 cut(s)	75
HphI	GGTGA	3 cut(s)	328, 360, 1283
Hpy166II	GTNNAC	6 cut(s)	6, 75, 231, 305, 1131, 1217
Hpy188I	TCNGA	7 cut(s)	15, 142, 177, 522, 678, 735, 1192
Hpy188III	TCNNGA	5 cut(s)	98, 482, 537, 893, 1104
Hpy8I	GTNNAC	6 cut(s)	6, 75, 231, 305, 1131, 1217
HpyAV	CCTTC	2 cut(s)	143, 1050
HpyCH4III	ACNGT	3 cut(s)	277, 346, 1135
HpyCH4IV	ACGT	1 cut(s)	1310
HpyCH4V	TGCA	9 cut(s)	205, 259, 349, 584, 608, 983, 1009, 1064, 1172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1269
HpyF3I	CTNAG	9 cut(s)	141, 186, 519, 675, 717, 732, 810, 1121, 1286
HpySE526I	ACGT	1 cut(s)	1310
Hsp92II	CATG	7 cut(s)	151, 412, 490, 547, 673, 1013, 1326
Ksp22I	TGATCA	4 cut(s)	67, 177, 238, 835
KspAI	GTTAAC	1 cut(s)	75
Kzo9I	GATC	6 cut(s)	67, 177, 238, 411, 835, 1000
LmnI	GCTCC	1 cut(s)	1087
Lsp1109I	GCAGC	6 cut(s)	409, 430, 454, 763, 1032, 1156
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	6 cut(s)	288, 300, 372, 953, 1139, 1158
MaeII	ACGT	1 cut(s)	1310
MaeIII	GTNAC	4 cut(s)	686, 744, 862, 1289
MalI	GATC	6 cut(s)	69, 179, 240, 413, 837, 1002
MboI	GATC	6 cut(s)	67, 177, 238, 411, 835, 1000
MboII	GAAGA	2 cut(s)	116, 1082
MfeI	CAATTG	1 cut(s)	909
MflI	RGATCY	1 cut(s)	1000
MhlI	GDGCHC	2 cut(s)	782, 1122
MlyI	GAGTC	2 cut(s)	236, 1151
MmeI	TCCRAC	2 cut(s)	845, 953
MnlI	CCTC	8 cut(s)	148, 217, 349, 457, 481, 526, 621, 642
MseI	TTAA	5 cut(s)	74, 126, 357, 453, 948
MslI	CAYNNNNRTG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	696
MunI	CAATTG	1 cut(s)	909
Mva1269I	GAATGC	2 cut(s)	205, 273
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	1269
NdeII	GATC	6 cut(s)	67, 177, 238, 411, 835, 1000
NlaIII	CATG	7 cut(s)	151, 412, 490, 547, 673, 1013, 1326
NlaIV	GGNNCC	5 cut(s)	514, 643, 1002, 1089, 1155
NmuCI	GTSAC	2 cut(s)	744, 1289
NspI	RCATGY	1 cut(s)	547
PciI	ACATGT	1 cut(s)	543
PctI	GAATGC	2 cut(s)	205, 273
PfeI	GAWTC	5 cut(s)	490, 666, 896, 968, 1073
PkrI	GCNGC	6 cut(s)	424, 445, 469, 753, 1022, 1171
PleI	GAGTC	2 cut(s)	235, 1150
PpsI	GAGTC	2 cut(s)	235, 1150
PscI	ACATGT	1 cut(s)	543
PshBI	ATTAAT	1 cut(s)	453
PsiI	TTATAA	1 cut(s)	650
Psp124BI	GAGCTC	1 cut(s)	1122
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	5 cut(s)	514, 643, 1002, 1089, 1155
PspPI	GGNCC	1 cut(s)	818
PsuI	RGATCY	1 cut(s)	1000
RsaI	GTAC	3 cut(s)	5, 146, 906
RsaNI	GTAC	3 cut(s)	4, 145, 905
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	1122
SaqAI	TTAA	5 cut(s)	74, 126, 357, 453, 948
SatI	GCNGC	6 cut(s)	423, 444, 468, 752, 1021, 1170
Sau3AI	GATC	6 cut(s)	67, 177, 238, 411, 835, 1000
Sau96I	GGNCC	1 cut(s)	818
SchI	GAGTC	2 cut(s)	236, 1151
ScrFI	CCNGG	1 cut(s)	696
SduI	GDGCHC	2 cut(s)	782, 1122
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	1 cut(s)	818
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	472, 877
SmoI	CTYRAG	2 cut(s)	472, 877
SspI	AATATT	1 cut(s)	924
SspMI	CTAG	6 cut(s)	288, 300, 372, 953, 1139, 1158
SstI	GAGCTC	1 cut(s)	1122
StyD4I	CCNGG	1 cut(s)	694
StyI	CCWWGG	1 cut(s)	1157
TaaI	ACNGT	3 cut(s)	277, 346, 1135
TaiI	ACGT	1 cut(s)	1313
TatI	WGTACW	2 cut(s)	3, 144
TfiI	GAWTC	5 cut(s)	490, 666, 896, 968, 1073
Tru1I	TTAA	5 cut(s)	74, 126, 357, 453, 948
Tru9I	TTAA	5 cut(s)	74, 126, 357, 453, 948
TseFI	GTSAC	2 cut(s)	744, 1289
TseI	GCWGC	6 cut(s)	422, 443, 467, 751, 1020, 1169
Tsp45I	GTSAC	2 cut(s)	744, 1289
TspDTI	ATGAA	8 cut(s)	80, 117, 209, 616, 658, 964, 1002, 1065
VpaK11BI	GGWCC	1 cut(s)	818
VspI	ATTAAT	1 cut(s)	453
XceI	RCATGY	1 cut(s)	547
XmaJI	CCTAGG	1 cut(s)	1157
XmiI	GTMKAC	2 cut(s)	230, 304
XspI	CTAG	6 cut(s)	288, 300, 372, 953, 1139, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.