Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0008883

Physical Location & Seq

Genomic Coordinates Reverse (-)

24396687 .. 24397652

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1156300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGATGGAGCATTCACGTACCAACCGTAAGCTGGTTTTGTTCAAATTCCTGCATGGGTTCATTCTTTTATGCATGAGCACATGCCTCGAATCTACAACACTTCGCAGCCTTACTCTCCTTGGAAATGAATCTGATCGCTTGGCACTGCTAGACTTCAAGAAAAGAATAACAGTTGATCCTTTCAATGTCATGAGCTCGTGGAATCATTCCATCCATTTCTGCAATTGGGTTGGAGTTTCATGCCACCATTCCACCAAAAGAGTCTTGATGTTGAACCTGAAATCAAAAAAGTTGGTAGGCTCCATTTCACCTTCAGTTGGAAATCTTACTTATCTTACTGGAATCAATTTGAGAGACAACAACTTTCATGGGGAAATTCCTCCAGAAATGGGTCGTCTACAAAGCCTACAATATCTCAACCTCTCTCATAATTCCTTTGGTGGGAAAATTCCAACTAATTTGTCGCAATGCATACAACTAAAATTGCTTAATCTGCAAGCCAATCGGATGATGGAGTCCATTCCAAACCAACTCAGTTCATTGTTGAATTTAAAATATCTACGGCTTGATGGTAACAATCTCACTGGAACTATCCCACCTTGGATAGGAAACTTTTCCTTGTTGAGTAGTCTAATACTTGGCAAGAACAATTTTCAAGGAAGCATACCCAATGAGCTTGGGCATATAGCAGGCTTGGAGGTGTTCGTAGTTGAGAAGAATGATCTATCTGGTATGATCCCATCCCCAATCTATAATATTTCTTCCATATCCACTTTTAGTGTTGCTGTCAACCAGTTGAATGGAGAGCTACCAACAAATCTCGGCACTATGCTTCCTAATCTCGTAGACCTTTACTGCGATGTGAACAAATTCACAGGAAATATTCCCATATCATTGTCAAATGCTTCAAGACTTCAGATGCTTGAACTTTCTCAAAATGGTTTTCTCTGGGACAGTCCCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

322

Amino Acids

35.82

Weight (kDa)

8.89

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	43 - 81	6.9e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	87 - 170	4.6e-06	Leucine-rich repeat region
LRR_8	PF13855	112 - 169	8.8e-06	Leucine rich repeat
LRR_14	PF23598	153 - 314	2.2e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008883)

Species	Orthologous Gene IDs
malus_domestica	MD03G1225100.v1.1 MD04G1149900.v1.1 MD04G1156300.v1.1 MD04G1157600.v1.1 MD04G1157800.v1.1 MD04G1158300.v1.1 MD04G1158700.v1.1 MD05G1075700.v1.1 MD07G1165000.v1.1 MD12G1130600.v1.1 MD12G1134600.v1.1 MD12G1134900.v1.1 MD12G1135400.v1.1 MD12G1136000.v1.1 MD12G1170300.v1.1 MD12G1170900.v1.1 MD13G1275400.v1.1
pyrus_communis	pycom12g10490 pycom12g12990 pycom12g13010 pycom12g16250
rosa_chinensis	RchiOBHm_Chr1g0356231
rosa_rugosa	Rorug03G0064300.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	397, 846
AclWI	GGATC	2 cut(s)	170, 730
AcsI	RAATTY	5 cut(s)	44, 375, 447, 547, 869
AcuI	CTGAAG	2 cut(s)	297, 899
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	5 cut(s)	31, 317, 389, 441, 605
AgsI	TTSAA	9 cut(s)	43, 157, 184, 274, 547, 656, 799, 909, 926
AjnI	CCWGG	1 cut(s)	959
AluBI	AGCT	4 cut(s)	31, 195, 676, 808
AluI	AGCT	4 cut(s)	31, 195, 676, 808
Alw21I	GWGCWC	2 cut(s)	80, 197
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	170, 730
AlwNI	CAGNNNCTG	1 cut(s)	960
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	5 cut(s)	44, 375, 447, 547, 869
Asp700I	GAANNNNTTC	2 cut(s)	613, 869
AsuHPI	GGTGA	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	196
Bbv12I	GWGCWC	2 cut(s)	80, 197
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	4 cut(s)	218, 505, 563, 748
BceAI	ACGGC	1 cut(s)	578
BcgI	CGANNNNNNTGC	4 cut(s)	67, 101, 485, 519
BciT130I	CCWGG	1 cut(s)	961
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	961
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	961
BmsI	GCATC	1 cut(s)	909
BpmI	CTGGAG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	118, 599, 959
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 317, 389, 441, 605
Bse1I	ACTGG	3 cut(s)	343, 589, 793
Bse3DI	GCAATG	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	961
BseDI	CCNNGG	3 cut(s)	118, 599, 959
BseGI	GGATG	3 cut(s)	210, 513, 740
BseLI	CCNNNNNNNGG	5 cut(s)	31, 317, 389, 441, 605
BseMI	GCAATG	1 cut(s)	473
BseMII	CTCAG	1 cut(s)	547
BseNI	ACTGG	3 cut(s)	343, 589, 793
BseXI	GCAGC	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	80, 197
BslFI	GGGAC	1 cut(s)	942
BslI	CCNNNNNNNGG	5 cut(s)	31, 317, 389, 441, 605
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	942
BsmI	GAATGC	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	80, 197
Bsp143I	GATC	4 cut(s)	133, 175, 721, 735
BspCNI	CTCAG	1 cut(s)	546
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	2 cut(s)	170, 730
BsrDI	GCAATG	1 cut(s)	473
BsrI	ACTGG	3 cut(s)	343, 589, 793
BssECI	CCNNGG	3 cut(s)	118, 599, 959
BssMI	GATC	4 cut(s)	133, 175, 721, 735
BssSI	CACGAG	1 cut(s)	196
BssT1I	CCWWGG	2 cut(s)	118, 599
Bst2BI	CACGAG	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	961
Bst4CI	ACNGT	3 cut(s)	26, 172, 956
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	498, 691
BstDEI	CTNAG	1 cut(s)	533
BstENI	CCTNNNNNAGG	1 cut(s)	603
BstF5I	GGATG	3 cut(s)	210, 513, 740
BstKTI	GATC	4 cut(s)	136, 178, 724, 738
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	4 cut(s)	133, 175, 721, 735
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	1 cut(s)	961
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	959
BstV1I	GCAGC	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	800
BtgZI	GCGATG	1 cut(s)	873
BtsCI	GGATG	3 cut(s)	210, 513, 740
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	2 cut(s)	143, 582
Cac8I	GCNNGC	2 cut(s)	498, 691
CaiI	CAGNNNCTG	1 cut(s)	960
CciI	TCATGA	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	6 cut(s)	53, 73, 81, 190, 240, 368
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	4 cut(s)	135, 177, 723, 737
DpnII	GATC	4 cut(s)	133, 175, 721, 735
DraI	TTTAAA	1 cut(s)	552
Ecl136II	GAGCTC	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	118, 599
Eco24I	GRGCYC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	195
Eco57I	CTGAAG	2 cut(s)	297, 899
EcoICRI	GAGCTC	1 cut(s)	195
EcoNI	CCTNNNNNAGG	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	959
EcoT14I	CCWWGG	2 cut(s)	118, 599
EcoT22I	ATGCAT	2 cut(s)	74, 473
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	2 cut(s)	118, 599
FaeI	CATG	6 cut(s)	56, 76, 84, 193, 243, 371
FaqI	GGGAC	1 cut(s)	942
FatI	CATG	6 cut(s)	52, 72, 80, 189, 239, 367
FblI	GTMKAC	2 cut(s)	397, 846
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	3 cut(s)	197, 520, 727
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	366
Hin1II	CATG	6 cut(s)	56, 76, 84, 193, 243, 371
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HinfI	GANTC	6 cut(s)	89, 128, 202, 261, 342, 515
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	4 cut(s)	398, 790, 847, 865
Hpy188I	TCNGA	3 cut(s)	133, 507, 918
Hpy188III	TCNNGA	5 cut(s)	157, 190, 265, 383, 909
Hpy8I	GTNNAC	4 cut(s)	398, 790, 847, 865
HpyAV	CCTTC	1 cut(s)	321
HpyCH4III	ACNGT	3 cut(s)	26, 172, 956
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	5 cut(s)	52, 72, 222, 471, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	1 cut(s)	533
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	6 cut(s)	56, 76, 84, 193, 243, 371
Kzo9I	GATC	4 cut(s)	133, 175, 721, 735
LmnI	GCTCC	2 cut(s)	7, 305
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	909
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	4 cut(s)	135, 177, 723, 737
MboI	GATC	4 cut(s)	133, 175, 721, 735
MboII	GAAGA	2 cut(s)	727, 753
MfeI	CAATTG	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	80, 197
MlyI	GAGTC	2 cut(s)	270, 524
MmeI	TCCRAC	3 cut(s)	211, 298, 476
MnlI	CCTC	4 cut(s)	95, 390, 431, 691
Mph1103I	ATGCAT	2 cut(s)	74, 473
MroXI	GAANNNNTTC	2 cut(s)	613, 869
MseI	TTAA	2 cut(s)	489, 551
MspR9I	CCNGG	1 cut(s)	961
MunI	CAATTG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	961
MwoI	GCNNNNNNNGC	1 cut(s)	493
NdeII	GATC	4 cut(s)	133, 175, 721, 735
NlaIII	CATG	6 cut(s)	56, 76, 84, 193, 243, 371
NlaIV	GGNNCC	1 cut(s)	301
NmeAIII	GCCGAG	1 cut(s)	801
NsiI	ATGCAT	2 cut(s)	74, 473
NspI	RCATGY	1 cut(s)	84
PagI	TCATGA	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	2 cut(s)	613, 869
PfeI	GAWTC	4 cut(s)	89, 128, 202, 342
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	2 cut(s)	269, 523
PpsI	GAGTC	2 cut(s)	269, 523
Ppu21I	YACGTR	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	959
PspGI	CCWGG	1 cut(s)	959
PspN4I	GGNNCC	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	960
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	489, 551
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	4 cut(s)	133, 175, 721, 735
SchI	GAGTC	2 cut(s)	270, 524
ScrFI	CCNGG	1 cut(s)	961
SduI	GDGCHC	2 cut(s)	80, 197
SfaNI	GCATC	1 cut(s)	909
SspI	AATATT	2 cut(s)	757, 883
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	959
StyI	CCWWGG	2 cut(s)	118, 599
TaaI	ACNGT	3 cut(s)	26, 172, 956
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	87
TfiI	GAWTC	4 cut(s)	89, 128, 202, 342
Tru1I	TTAA	2 cut(s)	489, 551
Tru9I	TTAA	2 cut(s)	489, 551
TscAI	CASTG	2 cut(s)	150, 589
TseI	GCWGC	1 cut(s)	105
TspDTI	ATGAA	5 cut(s)	49, 141, 228, 356, 528
TspRI	CASTG	2 cut(s)	150, 589
XagI	CCTNNNNNAGG	1 cut(s)	603
XapI	RAATTY	5 cut(s)	44, 375, 447, 547, 869
XceI	RCATGY	1 cut(s)	84
XcmI	CCANNNNNNNNNTGG	2 cut(s)	28, 508
XmiI	GTMKAC	2 cut(s)	397, 846
XmnI	GAANNNNTTC	2 cut(s)	613, 869
XspI	CTAG	1 cut(s)	149
Zsp2I	ATGCAT	2 cut(s)	74, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.