Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008883

Physical Location & Seq

Genomic Coordinates Reverse (-)

21271210 .. 21272189

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1136000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGAGAGTTCACATTGTCATGGTAGGCCCATTTTGAGTAAATTCCTTCATATGCTCGTTCTGATTTCGTGCTTGAGTGCAGGTCTGGCGATCACTGATTTTGGAAATGAAACTGACGGCCTGGCCCTGCTCGACTTGAAGAGAAGGATAACAAAAGATCCTCTCCGAATCATGAGCTCGTGGAATGATTCCGTCGATTTTTGCAGTTGGATTGGTGTCACGTGCCATCATTCCACCAAAAGAGTCATGATTTTGGACCTCGAAGCTCAAGAATTGGTAGGTTCCTTACCACACTCTATAGGCAATCTTACTTATCTTACCGGAATCAACTTGAGACACAACCACTTTCGTGGTGAAATTCTTCAAGAAATGGGGCGTCTCCGAAGCCTGCAGTATCTCAACATGTCTTACAATTCCTTTGTCGGGAAAATTCCAACTAATATATCTTATTGCACACAACTAAAGATGCTTGATGTTAGTTCCAATATGATTATTGGGTCGATTCCTGACCAACTAAGTTCGTTGTTGAATTTAACTCATCTATGGGTTTATGGTAACAATCTTACTGGAACCATCCCAAGTTGGATAGGAAATTTTTCTTCTTTGAATACTCTTTATCTTGACACCAACAACTTTCAAGGAAGCATACCCAACGAGTTCGGACGTCTAACTAGCTTGGGAAAATTCGTGCTTGGGTTGAATAATCTATCTGGTATTGTCCCTTCTTCCATATATAATATTTCCTCCATATACATTTTCGATGTTACTCAGAACCAGCTGCATGGAGAGCTACCACCAAATGTCGGGATTACTCTTCCTAATCTCGAACAATTTTACATTTCTCTTAATAAATTTACTGGAGCATTTCCTTTGTCATTGGCCAATGCTTCTAGACTTCAGAGTCTTGATTTTTCTTTAAATGGTCTCACCGGGACACACTTGGGAGCAGCCTCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

320

Amino Acids

35.21

Weight (kDa)

6.58

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	37 - 75	8.7e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	120 - 311	9.2e-13	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008883)

Species	Orthologous Gene IDs
malus_domestica	MD03G1225100.v1.1 MD04G1149900.v1.1 MD04G1156300.v1.1 MD04G1157600.v1.1 MD04G1157800.v1.1 MD04G1158300.v1.1 MD04G1158700.v1.1 MD05G1075700.v1.1 MD07G1165000.v1.1 MD12G1130600.v1.1 MD12G1134600.v1.1 MD12G1134900.v1.1 MD12G1135400.v1.1 MD12G1136000.v1.1 MD12G1170300.v1.1 MD12G1170900.v1.1 MD13G1275400.v1.1
pyrus_communis	pycom12g10490 pycom12g12990 pycom12g13010 pycom12g16250
rosa_chinensis	RchiOBHm_Chr1g0356231
rosa_rugosa	Rorug03G0064300.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	900
AatII	GACGTC	1 cut(s)	667
Acc36I	ACCTGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	879
AcsI	RAATTY	7 cut(s)	41, 357, 429, 529, 592, 683, 851
AcuI	CTGAAG	1 cut(s)	881
AcvI	CACGTG	1 cut(s)	222
AcyI	GRCGYC	2 cut(s)	376, 664
AfiI	CCNNNNNNNGG	2 cut(s)	423, 803
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	6 cut(s)	139, 365, 529, 607, 638, 700
AjnI	CCWGG	1 cut(s)	120
AleI	CACNNNNGTG	1 cut(s)	348
AluBI	AGCT	5 cut(s)	177, 266, 675, 778, 790
AluI	AGCT	5 cut(s)	177, 266, 675, 778, 790
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	3 cut(s)	328, 383, 929
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	4 cut(s)	26, 118, 123, 879
ApeKI	GCWGC	2 cut(s)	778, 947
ApoI	RAATTY	7 cut(s)	41, 357, 429, 529, 592, 683, 851
Asp700I	GAANNNNTTC	2 cut(s)	360, 595
AspS9I	GGNCC	3 cut(s)	27, 124, 256
AsuC2I	CCSGG	1 cut(s)	931
AsuHPI	GGTGA	2 cut(s)	365, 919
AvaII	GGWCC	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	881
BanII	GRGCYC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	706, 738
BauI	CACGAG	1 cut(s)	178
BbrPI	CACGTG	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	765
BccI	CCATC	2 cut(s)	234, 581
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	931
BcoDI	GTCTC	3 cut(s)	328, 383, 929
BfaI	CTAG	2 cut(s)	672, 891
BfmI	CTRYAG	2 cut(s)	297, 389
BfuAI	ACCTGC	1 cut(s)	71
BisI	GCNGC	2 cut(s)	779, 948
BlsI	GCNGC	2 cut(s)	780, 949
Bme1390I	CCNGG	2 cut(s)	122, 931
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	3 cut(s)	27, 124, 256
BmiI	GGNNCC	2 cut(s)	283, 571
BmrFI	CCNGG	2 cut(s)	122, 931
BmsI	GCATC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	879
BpuEI	CTTGAG	3 cut(s)	94, 252, 352
BpuMI	CCSGG	1 cut(s)	931
BsaAI	YACGTR	1 cut(s)	222
BsaHI	GRCGYC	2 cut(s)	376, 664
BsaI	GGTCTC	1 cut(s)	929
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 803
Bse1I	ACTGG	2 cut(s)	571, 862
BseBI	CCWGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	2 cut(s)	423, 803
BseMII	CTCAG	1 cut(s)	782
BseNI	ACTGG	2 cut(s)	571, 862
BseXI	GCAGC	1 cut(s)	765
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	4 cut(s)	28, 120, 125, 881
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	321, 930
BslFI	GGGAC	2 cut(s)	704, 946
BslI	CCNNNNNNNGG	2 cut(s)	423, 803
BsmAI	GTCTC	3 cut(s)	328, 383, 929
BsmBI	CGTCTC	1 cut(s)	383
BsmFI	GGGAC	2 cut(s)	704, 946
BsnI	GGCC	4 cut(s)	28, 120, 125, 881
Bso31I	GGTCTC	1 cut(s)	929
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	90, 157
BspANI	GGCC	4 cut(s)	28, 120, 125, 881
BspCNI	CTCAG	1 cut(s)	781
BspHI	TCATGA	2 cut(s)	171, 246
BspLI	GGNNCC	2 cut(s)	283, 571
BspMAI	CTGCAG	1 cut(s)	393
BspMI	ACCTGC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	929
BsrI	ACTGG	2 cut(s)	571, 862
BssMI	GATC	2 cut(s)	90, 157
BssNI	GRCGYC	2 cut(s)	376, 664
BssSI	CACGAG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	122
Bst6I	CTCTTC	2 cut(s)	134, 819
BstACI	GRCGYC	2 cut(s)	376, 664
BstBAI	YACGTR	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	515, 768
BstF5I	GGATG	1 cut(s)	573
BstKTI	GATC	2 cut(s)	93, 160
BstMAI	GTCTC	3 cut(s)	328, 383, 929
BstMBI	GATC	2 cut(s)	90, 157
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 787
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	120, 929
BstSFI	CTRYAG	2 cut(s)	297, 389
BstV1I	GCAGC	1 cut(s)	765
BstX2I	RGATCY	1 cut(s)	157
BstXI	CCANNNNNNTGG	2 cut(s)	350, 782
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	4 cut(s)	28, 120, 125, 881
BtsCI	GGATG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	389
CciI	TCATGA	2 cut(s)	171, 246
Cfr13I	GGNCC	3 cut(s)	27, 124, 256
CseI	GACGC	1 cut(s)	365
CviAII	CATG	5 cut(s)	20, 172, 247, 403, 782
DdeI	CTNAG	2 cut(s)	515, 768
DpnI	GATC	2 cut(s)	92, 159
DpnII	GATC	2 cut(s)	90, 157
DraI	TTTAAA	1 cut(s)	918
DrdI	GACNNNNNNGTC	1 cut(s)	900
DseDI	GACNNNNNNGTC	1 cut(s)	900
EaeI	YGGCCR	1 cut(s)	879
Eam1104I	CTCTTC	2 cut(s)	134, 819
EarI	CTCTTC	2 cut(s)	134, 819
Ecl136II	GAGCTC	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	929
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	881
Eco72I	CACGTG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	179
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	5 cut(s)	23, 175, 250, 406, 785
FaqI	GGGAC	2 cut(s)	704, 946
FatI	CATG	5 cut(s)	19, 171, 246, 402, 781
FauNDI	CATATG	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	779, 948
FokI	GGATG	1 cut(s)	560
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	779, 948
FspBI	CTAG	2 cut(s)	672, 891
GluI	GCNGC	2 cut(s)	779, 948
GsuI	CTGGAG	1 cut(s)	879
HaeIII	GGCC	4 cut(s)	28, 120, 125, 881
HapII	CCGG	2 cut(s)	321, 930
HgaI	GACGC	1 cut(s)	365
Hin1I	GRCGYC	2 cut(s)	376, 664
Hin1II	CATG	5 cut(s)	23, 175, 250, 406, 785
HinfI	GANTC	6 cut(s)	168, 188, 243, 324, 502, 901
HpaII	CCGG	2 cut(s)	321, 930
HphI	GGTGA	2 cut(s)	365, 919
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	6 cut(s)	63, 167, 383, 662, 771, 900
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	3 cut(s)	56, 138, 732
HpyCH4IV	ACGT	2 cut(s)	221, 664
HpyCH4V	TGCA	5 cut(s)	80, 204, 391, 453, 781
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 787
HpyF3I	CTNAG	2 cut(s)	515, 768
HpySE526I	ACGT	2 cut(s)	221, 664
Hsp92I	GRCGYC	2 cut(s)	376, 664
Hsp92II	CATG	5 cut(s)	23, 175, 250, 406, 785
Kzo9I	GATC	2 cut(s)	90, 157
LmnI	GCTCC	2 cut(s)	860, 944
Lsp1109I	GCAGC	1 cut(s)	765
LweI	GCATC	1 cut(s)	456
MaeI	CTAG	2 cut(s)	672, 891
MaeII	ACGT	2 cut(s)	221, 664
MaeIII	GTNAC	3 cut(s)	217, 554, 763
MalI	GATC	2 cut(s)	92, 159
MboI	GATC	2 cut(s)	90, 157
MboII	GAAGA	5 cut(s)	151, 353, 591, 717, 806
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	179
MlsI	TGGCCA	1 cut(s)	881
MluNI	TGGCCA	1 cut(s)	881
MlyI	GAGTC	2 cut(s)	252, 910
MmeI	TCCRAC	3 cut(s)	188, 458, 563
MnlI	CCTC	3 cut(s)	171, 269, 754
Mox20I	TGGCCA	1 cut(s)	881
MroXI	GAANNNNTTC	2 cut(s)	360, 595
MscI	TGGCCA	1 cut(s)	881
MseI	TTAA	3 cut(s)	533, 846, 917
MslI	CAYNNNNRTG	2 cut(s)	18, 348
Msp20I	TGGCCA	1 cut(s)	881
MspA1I	CMGCKG	1 cut(s)	778
MspI	CCGG	2 cut(s)	321, 930
MspR9I	CCNGG	2 cut(s)	122, 931
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	2 cut(s)	86, 787
NciI	CCSGG	1 cut(s)	931
NdeI	CATATG	1 cut(s)	51
NdeII	GATC	2 cut(s)	90, 157
NlaIII	CATG	5 cut(s)	23, 175, 250, 406, 785
NlaIV	GGNNCC	2 cut(s)	283, 571
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	1 cut(s)	406
OliI	CACNNNNGTG	1 cut(s)	348
PagI	TCATGA	2 cut(s)	171, 246
PciI	ACATGT	1 cut(s)	402
PdmI	GAANNNNTTC	2 cut(s)	360, 595
PfeI	GAWTC	4 cut(s)	168, 188, 324, 502
PkrI	GCNGC	2 cut(s)	780, 949
PleI	GAGTC	2 cut(s)	251, 909
PmaCI	CACGTG	1 cut(s)	222
PmlI	CACGTG	1 cut(s)	222
PpsI	GAGTC	2 cut(s)	251, 909
Ppu21I	YACGTR	1 cut(s)	222
PscI	ACATGT	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	120
PspCI	CACGTG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	283, 571
PspPI	GGNCC	3 cut(s)	27, 124, 256
PstI	CTGCAG	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	778
RseI	CAYNNNNRTG	2 cut(s)	18, 348
SacI	GAGCTC	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	533, 846, 917
SatI	GCNGC	2 cut(s)	779, 948
Sau3AI	GATC	2 cut(s)	90, 157
Sau96I	GGNCC	3 cut(s)	27, 124, 256
SchI	GAGTC	2 cut(s)	252, 910
ScrFI	CCNGG	2 cut(s)	122, 931
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	1 cut(s)	456
SfcI	CTRYAG	2 cut(s)	297, 389
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	2 cut(s)	18, 348
SmlI	CTYRAG	3 cut(s)	73, 267, 331
SmoI	CTYRAG	3 cut(s)	73, 267, 331
SspI	AATATT	1 cut(s)	739
SspMI	CTAG	2 cut(s)	672, 891
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	2 cut(s)	120, 929
TaiI	ACGT	2 cut(s)	224, 667
TaqI	TCGA	6 cut(s)	132, 195, 261, 500, 759, 825
TfiI	GAWTC	4 cut(s)	168, 188, 324, 502
Tru1I	TTAA	3 cut(s)	533, 846, 917
Tru9I	TTAA	3 cut(s)	533, 846, 917
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	778, 947
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	38, 123
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	7 cut(s)	41, 357, 429, 529, 592, 683, 851
XbaI	TCTAGA	1 cut(s)	890
XceI	RCATGY	1 cut(s)	406
XmnI	GAANNNNTTC	2 cut(s)	360, 595
XspI	CTAG	2 cut(s)	672, 891
ZraI	GACGTC	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.