RchiOBHm_Chr1g0356231
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008883
Physical Location & Seq
Forward (+)
48762899 .. 48764113
1215 bp
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UTR
Exon/CDS
Intron
PRQ58162

Sequence Viewer

Length: 531 bp
ATGCTGGACCTCAAATCACAAGGCTTGTCCGGCTTCATATCCCCACACATAGGAAATCTAAGTTTCCTAAGGGAGATGTACCTCTATAGCAATAACTTCACTCATGAAATTCCTCTAGAAATTGGGCGTTTGCGTAGGTTGCAGGTATTACATCTAGCTAATATTTCATTTACTGGCCATATTCCTACCAACATATCCAATTGCTTCAATCTTACCTATCTCAGTTTCGGGTTCAACAAGCTGGTTGGTGAAATTCCTTCCCAACTCGGTTTCTTGTCTAAGCTTCAGACAATTGATTTCGACCAGAATAATGTTGAAGAGGAAAGATCCCACATTGGAAAACTCAGTGCAACTGTTAACAACTTGGTAGGTAGCATCCCTACGTCTTTAGGCCAATTGAAAAAATTAACTTTCTTTTCGTTGGGCGGTAATATGTTGTCTGGTTCCATGCCTCCCTCCATTTTTAACCTATCTGCCATTGTTTCTTTTTCCATATACTACAAAACCAAATTCAAGGAAATCTTCCCTTAA

Protein Analysis

176

Amino Acids

19.68

Weight (kDa)

9.07

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 2 - 74 6.8e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AciI CCGC 1 cut(s) 426
AclWI GGATC 1 cut(s) 321
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 3 cut(s) 108, 252, 509
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 5 cut(s) 208, 235, 317, 400, 514
AluBI AGCT 3 cut(s) 158, 241, 283
AluI AGCT 3 cut(s) 158, 241, 283
AlwI GGATC 1 cut(s) 321
AoxI GGCC 2 cut(s) 175, 391
ApoI RAATTY 3 cut(s) 108, 252, 509
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 1 cut(s) 7
AxyI CCTNAGG 1 cut(s) 68
BalI TGGCCA 1 cut(s) 177
BfaI CTAG 2 cut(s) 116, 155
BfmI CTRYAG 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 445
BmsI GCATC 1 cut(s) 384
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 178
Bse21I CCTNAGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 2 cut(s) 235, 358
BseNI ACTGG 1 cut(s) 178
BshFI GGCC 2 cut(s) 177, 393
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 50
BsnI GGCC 2 cut(s) 177, 393
Bsp143I GATC 1 cut(s) 326
BspACI CCGC 1 cut(s) 426
BspANI GGCC 2 cut(s) 177, 393
BspCNI CTCAG 2 cut(s) 234, 357
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 1 cut(s) 321
BsrI ACTGG 1 cut(s) 178
BssMI GATC 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 1 cut(s) 312
BstDEI CTNAG 5 cut(s) 59, 68, 221, 279, 344
BstF5I GGATG 1 cut(s) 375
BstKTI GATC 1 cut(s) 329
BstMBI GATC 1 cut(s) 326
BstMWI GCNNNNNNNGC 2 cut(s) 30, 139
BstSFI CTRYAG 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
Bsu36I CCTNAGG 1 cut(s) 68
BsuRI GGCC 2 cut(s) 177, 393
BtsCI GGATG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 352
BveI ACCTGC 1 cut(s) 133
CciI TCATGA 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 104, 448
CviJI RGCY 7 cut(s) 24, 33, 158, 177, 241, 283, 393
CviKI_1 RGCY 7 cut(s) 24, 33, 158, 177, 241, 283, 393
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 5 cut(s) 59, 68, 221, 279, 344
DpnI GATC 1 cut(s) 328
DpnII GATC 1 cut(s) 326
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 269
Eco81I CCTNAGG 1 cut(s) 68
FaeI CATG 2 cut(s) 107, 451
FalI AAGNNNNNCTT 1 cut(s) 506
FatI CATG 2 cut(s) 103, 447
FokI GGATG 1 cut(s) 362
FspBI CTAG 2 cut(s) 116, 155
HaeIII GGCC 2 cut(s) 177, 393
HapII CCGG 1 cut(s) 30
Hin1II CATG 2 cut(s) 107, 451
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 281
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 1 cut(s) 30
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 2 cut(s) 104, 116
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 2 cut(s) 142, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 139
HpyF3I CTNAG 5 cut(s) 59, 68, 221, 279, 344
HpySE526I ACGT 1 cut(s) 383
Hsp92II CATG 2 cut(s) 107, 451
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 1 cut(s) 326
LpnPI CCDG 6 cut(s) 43, 128, 159, 227, 317, 426
LweI GCATC 1 cut(s) 384
MaeI CTAG 2 cut(s) 116, 155
MaeII ACGT 1 cut(s) 383
MalI GATC 1 cut(s) 328
MboI GATC 1 cut(s) 326
MboII GAAGA 2 cut(s) 329, 514
MfeI CAATTG 3 cut(s) 199, 291, 395
MflI RGATCY 1 cut(s) 326
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 8 cut(s) 108, 120, 199, 252, 291, 395, 404, 509
MluNI TGGCCA 1 cut(s) 177
MnlI CCTC 6 cut(s) 20, 92, 123, 313, 462, 466
Mox20I TGGCCA 1 cut(s) 177
MscI TGGCCA 1 cut(s) 177
MseI TTAA 4 cut(s) 357, 407, 465, 529
Msp20I TGGCCA 1 cut(s) 177
MspI CCGG 1 cut(s) 30
MunI CAATTG 3 cut(s) 199, 291, 395
MwoI GCNNNNNNNGC 2 cut(s) 30, 139
NdeII GATC 1 cut(s) 326
NlaIII CATG 2 cut(s) 107, 451
NlaIV GGNNCC 1 cut(s) 445
PagI TCATGA 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 1 cut(s) 7
PsuI RGATCY 1 cut(s) 326
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 4 cut(s) 357, 407, 465, 529
Sau3AI GATC 1 cut(s) 326
Sau96I GGNCC 1 cut(s) 7
SfaNI GCATC 1 cut(s) 384
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 1 cut(s) 7
Sse9I AATT 8 cut(s) 108, 120, 199, 252, 291, 395, 404, 509
SsiI CCGC 1 cut(s) 426
SspI AATATT 1 cut(s) 163
SspMI CTAG 2 cut(s) 116, 155
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 386
TaqI TCGA 1 cut(s) 300
TasI AATT 8 cut(s) 108, 120, 199, 252, 291, 395, 404, 509
Tru1I TTAA 4 cut(s) 357, 407, 465, 529
Tru9I TTAA 4 cut(s) 357, 407, 465, 529
TscAI CASTG 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 25, 120, 156
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 3 cut(s) 108, 252, 509
XbaI TCTAGA 1 cut(s) 115
XspI CTAG 2 cut(s) 116, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.