Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008883

Physical Location & Seq

Genomic Coordinates Reverse (-)

15461161 .. 15462583

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g12990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCACACAGCACACTGTATCATTAAAGAAACTTGGTATCTTATTTGCTCTGTGTTTTCAGAAAGGATGGAGCATTCAAGTAGTACTCAAGTTAGGCTGTCTAAACTCTTTTATGGCTTCATTCTTTTGTGCATGAGCGCCGCAGTTCTGGAATCTGCGACACTGCCAAGCAGTGGCACTAGTCTTGGAAATGAAACGGATCGCATGGTGCTGCTCGACTTCAAGAAAAGAATCTCCGAAGATCCTTTTCATATCATGAGGTCATGGAATGATTCCATTCATTTCTGCAGTTGGGCTGGCGTTACATGCAACCGTATCACAAAAAGAGTCTTGACTCTGGAGCTGGAGTCTCAGAAATTGGTAGGCTGCATACCACCTTCTATTGGAAATCTTACTTTCCTTACTGGAATCAATCTGAGAAGGAACAATTTTCATGGTGAACTTCCTCAAGAATTGGGTCGTCTACAAAGCCTACAACACCTCAACCTGTCTGTCAATTCCTTCAGCGGGAAAATTCCAACGAATATATCTCACTGTACACAACTGAGAGTGCTCGAGCTTTACTCCAATAAGCTTATTGGGCCAATTCCGGACCAACTCAGTTCGTTGTTGGATTTAAATATTCTATTGTTTGATAAAAACAATCTCACTGGAACTATTCCAAGTTGGATAGGAAACTTTTCTTCTCTGTGTAGTCTTTACATTGGCGGAAACAACTTTCAAGGAAGCATACCTAAAGAGCTCGGGCGTCTAACAGGCTTGCAAGCATTCTCAGTAGCGGCAAATAATCTATCTGGTATGGTTCCTTCTTCAATCTATAATATTTCTTCCATATCCATTTTCGGTGTCAGTCAGAACCAGCTTCGCGGAGAGCTACCGCCAAATTTTGGCTTTATTCTTCCTAATCTTGAACAATTTCATGTTGGTGGCAACAAATTCACAGGAAATATTCCTGCATCGTTCTCAAATGCTTCTAGACTTCGTTATCTCAATTTGCCTGAAAATGATCGATCACTGGAACAGTTCCTGGTGAAAGCCTTGGAAGATTGCGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

353

Amino Acids

39.09

Weight (kDa)

7.61

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	65 - 104	3.5e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	109 - 206	1.3e-07	Leucine-rich repeat region
LRR_14	PF23598	152 - 332	1.6e-10	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008883)

Species	Orthologous Gene IDs
malus_domestica	MD03G1225100.v1.1 MD04G1149900.v1.1 MD04G1156300.v1.1 MD04G1157600.v1.1 MD04G1157800.v1.1 MD04G1158300.v1.1 MD04G1158700.v1.1 MD05G1075700.v1.1 MD07G1165000.v1.1 MD12G1130600.v1.1 MD12G1134600.v1.1 MD12G1134900.v1.1 MD12G1135400.v1.1 MD12G1136000.v1.1 MD12G1170300.v1.1 MD12G1170900.v1.1 MD13G1275400.v1.1
pyrus_communis	pycom12g10490 pycom12g12990 pycom12g13010 pycom12g16250
rosa_chinensis	RchiOBHm_Chr1g0356231
rosa_rugosa	Rorug03G0064300.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	173, 887
AccI	GTMKAC	1 cut(s)	463
AccII	CGCG	1 cut(s)	867
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	6 cut(s)	141, 507, 708, 779, 867, 878
AclWI	GGATC	2 cut(s)	207, 236
AcsI	RAATTY	3 cut(s)	513, 883, 935
AcuI	CTGAAG	1 cut(s)	487
AcyI	GRCGYC	1 cut(s)	748
AfaI	GTAC	2 cut(s)	85, 538
AfiI	CCNNNNNNNGG	4 cut(s)	173, 383, 507, 887
AgsI	TTSAA	5 cut(s)	78, 223, 722, 813, 911
AhlI	ACTAGT	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	1026
AluBI	AGCT	7 cut(s)	343, 559, 574, 742, 862, 874, 1055
AluI	AGCT	7 cut(s)	343, 559, 574, 742, 862, 874, 1055
Alw21I	GWGCWC	2 cut(s)	555, 744
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	2 cut(s)	207, 236
AlwNI	CAGNNNCTG	1 cut(s)	1027
Ama87I	CYCGRG	2 cut(s)	554, 743
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	1 cut(s)	581
ApeKI	GCWGC	2 cut(s)	211, 366
ApoI	RAATTY	3 cut(s)	513, 883, 935
Asp700I	GAANNNNTTC	2 cut(s)	679, 915
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	581, 592
AsuHPI	GGTGA	2 cut(s)	449, 1042
AvaI	CYCGRG	2 cut(s)	554, 743
AvaII	GGWCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	744
BarI	GAAGNNNNNNTAC	2 cut(s)	790, 822
Bbv12I	GWGCWC	2 cut(s)	555, 744
BbvI	GCAGC	2 cut(s)	198, 353
BccI	CCATC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	1028
BcoDI	GTCTC	1 cut(s)	354
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	180, 975
BfmI	CTRYAG	1 cut(s)	286
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	4 cut(s)	141, 212, 367, 780
BlsI	GCNGC	4 cut(s)	142, 213, 368, 781
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	1028
Bme18I	GGWCC	1 cut(s)	592
BmeT110I	CYCGRG	2 cut(s)	554, 743
BmgT120I	GGNCC	2 cut(s)	581, 592
BmiI	GGNNCC	1 cut(s)	804
BmrFI	CCNGG	1 cut(s)	1028
BmsI	GCATC	1 cut(s)	965
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	2 cut(s)	359, 365
BpuEI	CTTGAG	2 cut(s)	72, 432
Bsa29I	ATCGAT	1 cut(s)	1009
BsaHI	GRCGYC	1 cut(s)	748
BsaJI	CCNNGG	1 cut(s)	1038
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 383, 507, 887
Bse1I	ACTGG	3 cut(s)	409, 655, 1020
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	1028
BseCI	ATCGAT	1 cut(s)	1009
BseDI	CCNNGG	1 cut(s)	1038
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	4 cut(s)	173, 383, 507, 887
BseMII	CTCAG	5 cut(s)	365, 407, 536, 613, 786
BseNI	ACTGG	3 cut(s)	409, 655, 1020
BseXI	GCAGC	2 cut(s)	198, 353
Bsh1236I	CGCG	1 cut(s)	867
BshFI	GGCC	1 cut(s)	583
BshVI	ATCGAT	1 cut(s)	1009
BsiHKAI	GWGCWC	2 cut(s)	555, 744
BsiHKCI	CYCGRG	2 cut(s)	554, 743
BsiSI	CCGG	1 cut(s)	590
BslI	CCNNNNNNNGG	4 cut(s)	173, 383, 507, 887
BsmAI	GTCTC	1 cut(s)	354
BsmI	GAATGC	2 cut(s)	73, 767
BsnI	GGCC	1 cut(s)	583
BsoBI	CYCGRG	2 cut(s)	554, 743
Bsp1286I	GDGCHC	2 cut(s)	555, 744
Bsp13I	TCCGGA	1 cut(s)	589
Bsp1407I	TGTACA	1 cut(s)	536
Bsp143I	GATC	4 cut(s)	199, 241, 1006, 1010
BspACI	CCGC	6 cut(s)	141, 507, 708, 779, 867, 878
BspANI	GGCC	1 cut(s)	583
BspCNI	CTCAG	5 cut(s)	364, 408, 537, 612, 785
BspDI	ATCGAT	1 cut(s)	1009
BspEI	TCCGGA	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	867
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	804
BspMAI	CTGCAG	1 cut(s)	290
BspPI	GGATC	2 cut(s)	207, 236
BsrGI	TGTACA	1 cut(s)	536
BsrI	ACTGG	3 cut(s)	409, 655, 1020
BssECI	CCNNGG	1 cut(s)	1038
BssMI	GATC	4 cut(s)	199, 241, 1006, 1010
BssNI	GRCGYC	1 cut(s)	748
BssT1I	CCWWGG	1 cut(s)	1038
Bst2UI	CCWGG	1 cut(s)	1028
Bst4CI	ACNGT	4 cut(s)	17, 314, 536, 1023
BstACI	GRCGYC	1 cut(s)	748
BstAUI	TGTACA	1 cut(s)	536
BstC8I	GCNNGC	3 cut(s)	298, 761, 765
BstDEI	CTNAG	6 cut(s)	351, 416, 545, 599, 772, 1056
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	867
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	4 cut(s)	202, 244, 1009, 1013
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	4 cut(s)	199, 241, 1006, 1010
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 580
BstNI	CCWGG	1 cut(s)	1028
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	1026
BstSFI	CTRYAG	1 cut(s)	286
BstUI	CGCG	1 cut(s)	867
BstV1I	GCAGC	2 cut(s)	198, 353
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	1009
BsuRI	GGCC	1 cut(s)	583
BsuTUI	ATCGAT	1 cut(s)	1009
BtsCI	GGATG	1 cut(s)	72
BtsI	GCAGTG	2 cut(s)	161, 178
BtsIMutI	CAGTG	6 cut(s)	13, 161, 178, 532, 648, 1013
Cac8I	GCNNGC	3 cut(s)	298, 761, 765
CaiI	CAGNNNCTG	1 cut(s)	1027
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	581, 592
ClaI	ATCGAT	1 cut(s)	1009
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	2 cut(s)	84, 537
CviAII	CATG	7 cut(s)	133, 205, 256, 264, 306, 434, 920
CviQI	GTAC	2 cut(s)	84, 537
DdeI	CTNAG	6 cut(s)	351, 416, 545, 599, 772, 1056
DpnI	GATC	4 cut(s)	201, 243, 1008, 1012
DpnII	GATC	4 cut(s)	199, 241, 1006, 1010
DraI	TTTAAA	1 cut(s)	618
EciI	GGCGGA	1 cut(s)	723
Ecl136II	GAGCTC	1 cut(s)	742
Eco130I	CCWWGG	1 cut(s)	1038
Eco24I	GRGCYC	1 cut(s)	744
Eco47I	GGWCC	1 cut(s)	592
Eco53kI	GAGCTC	1 cut(s)	742
Eco57I	CTGAAG	1 cut(s)	487
Eco88I	CYCGRG	2 cut(s)	554, 743
EcoICRI	GAGCTC	1 cut(s)	742
EcoRII	CCWGG	1 cut(s)	1026
EcoT14I	CCWWGG	1 cut(s)	1038
EcoT38I	GRGCYC	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	1038
FaeI	CATG	7 cut(s)	136, 208, 259, 267, 309, 437, 923
FatI	CATG	7 cut(s)	132, 204, 255, 263, 305, 433, 919
FauI	CCCGC	1 cut(s)	500
FblI	GTMKAC	1 cut(s)	463
Fnu4HI	GCNGC	4 cut(s)	141, 212, 367, 780
FokI	GGATG	1 cut(s)	79
FriOI	GRGCYC	1 cut(s)	744
Fsp4HI	GCNGC	4 cut(s)	141, 212, 367, 780
FspBI	CTAG	2 cut(s)	180, 975
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	4 cut(s)	141, 212, 367, 780
GsuI	CTGGAG	2 cut(s)	359, 365
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	583
HapII	CCGG	1 cut(s)	590
HgaI	GACGC	1 cut(s)	737
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	748
Hin1II	CATG	7 cut(s)	136, 208, 259, 267, 309, 437, 923
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HindIII	AAGCTT	2 cut(s)	572, 1053
HinfI	GANTC	7 cut(s)	152, 231, 272, 327, 334, 347, 408
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	2 cut(s)	449, 1042
Hpy166II	GTNNAC	3 cut(s)	440, 464, 539
Hpy188I	TCNGA	5 cut(s)	61, 238, 354, 417, 855
Hpy188III	TCNNGA	9 cut(s)	149, 223, 256, 331, 338, 449, 590, 908, 975
Hpy8I	GTNNAC	3 cut(s)	440, 464, 539
HpyAV	CCTTC	4 cut(s)	387, 414, 511, 816
HpyCH4III	ACNGT	4 cut(s)	17, 314, 536, 1023
HpyCH4V	TGCA	7 cut(s)	4, 132, 288, 309, 369, 763, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 580
HpyF3I	CTNAG	6 cut(s)	351, 416, 545, 599, 772, 1056
Hsp92I	GRCGYC	1 cut(s)	748
Hsp92II	CATG	7 cut(s)	136, 208, 259, 267, 309, 437, 923
HspAI	GCGC	1 cut(s)	138
Kpn2I	TCCGGA	1 cut(s)	589
Kzo9I	GATC	4 cut(s)	199, 241, 1006, 1010
LmnI	GCTCC	2 cut(s)	70, 340
Lsp1109I	GCAGC	2 cut(s)	198, 353
LweI	GCATC	1 cut(s)	965
MaeI	CTAG	2 cut(s)	180, 975
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	4 cut(s)	201, 243, 1008, 1012
MboI	GATC	4 cut(s)	199, 241, 1006, 1010
MboII	GAAGA	6 cut(s)	251, 675, 801, 819, 890, 1055
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	2 cut(s)	555, 744
MlyI	GAGTC	3 cut(s)	328, 336, 356
MmeI	TCCRAC	3 cut(s)	542, 591, 647
MnlI	CCTC	3 cut(s)	252, 456, 491
MroI	TCCGGA	1 cut(s)	589
MroXI	GAANNNNTTC	2 cut(s)	679, 915
MseI	TTAA	2 cut(s)	24, 617
MslI	CAYNNNNRTG	1 cut(s)	924
MspA1I	CMGCKG	1 cut(s)	507
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	1 cut(s)	1028
Mva1269I	GAATGC	2 cut(s)	73, 767
MvaI	CCWGG	1 cut(s)	1028
MvnI	CGCG	1 cut(s)	867
MwoI	GCNNNNNNNGC	2 cut(s)	306, 580
NdeII	GATC	4 cut(s)	199, 241, 1006, 1010
NlaIII	CATG	7 cut(s)	136, 208, 259, 267, 309, 437, 923
NlaIV	GGNNCC	1 cut(s)	804
NspI	RCATGY	1 cut(s)	309
PaeR7I	CTCGAG	1 cut(s)	554
PagI	TCATGA	1 cut(s)	255
PctI	GAATGC	2 cut(s)	73, 767
PdmI	GAANNNNTTC	2 cut(s)	679, 915
PfeI	GAWTC	4 cut(s)	152, 231, 272, 408
PflMI	CCANNNNNTGG	2 cut(s)	173, 887
PkrI	GCNGC	4 cut(s)	142, 213, 368, 781
PleI	GAGTC	3 cut(s)	328, 335, 355
PpsI	GAGTC	3 cut(s)	328, 335, 355
Psp124BI	GAGCTC	1 cut(s)	744
Psp6I	CCWGG	1 cut(s)	1026
PspGI	CCWGG	1 cut(s)	1026
PspN4I	GGNNCC	1 cut(s)	804
PspPI	GGNCC	2 cut(s)	581, 592
PspXI	VCTCGAGB	1 cut(s)	554
PstI	CTGCAG	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	1027
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	2 cut(s)	85, 538
RsaNI	GTAC	2 cut(s)	84, 537
RseI	CAYNNNNRTG	1 cut(s)	924
SacI	GAGCTC	1 cut(s)	744
SaqAI	TTAA	2 cut(s)	24, 617
SatI	GCNGC	4 cut(s)	141, 212, 367, 780
Sau3AI	GATC	4 cut(s)	199, 241, 1006, 1010
Sau96I	GGNCC	2 cut(s)	581, 592
ScaI	AGTACT	1 cut(s)	85
SchI	GAGTC	3 cut(s)	328, 336, 356
ScrFI	CCNGG	1 cut(s)	1028
SduI	GDGCHC	2 cut(s)	555, 744
SfaNI	GCATC	1 cut(s)	965
SfcI	CTRYAG	1 cut(s)	286
Sfr274I	CTCGAG	1 cut(s)	554
SinI	GGWCC	1 cut(s)	592
SlaI	CTCGAG	1 cut(s)	554
SmiI	ATTTAAAT	1 cut(s)	618
SmiMI	CAYNNNNRTG	1 cut(s)	924
SmlI	CTYRAG	3 cut(s)	87, 447, 554
SmoI	CTYRAG	3 cut(s)	87, 447, 554
SpeI	ACTAGT	1 cut(s)	179
SsiI	CCGC	6 cut(s)	141, 507, 708, 779, 867, 878
SspI	AATATT	3 cut(s)	622, 823, 949
SspMI	CTAG	2 cut(s)	180, 975
SstI	GAGCTC	1 cut(s)	744
StyD4I	CCNGG	1 cut(s)	1026
StyI	CCWWGG	1 cut(s)	1038
SwaI	ATTTAAAT	1 cut(s)	618
TaaI	ACNGT	4 cut(s)	17, 314, 536, 1023
TaqI	TCGA	3 cut(s)	216, 555, 1009
TatI	WGTACW	2 cut(s)	83, 536
TauI	GCSGC	2 cut(s)	143, 782
TfiI	GAWTC	4 cut(s)	152, 231, 272, 408
Tru1I	TTAA	2 cut(s)	24, 617
Tru9I	TTAA	2 cut(s)	24, 617
TscAI	CASTG	6 cut(s)	20, 168, 178, 539, 655, 1020
TseI	GCWGC	2 cut(s)	211, 366
TspDTI	ATGAA	6 cut(s)	109, 207, 239, 269, 422, 908
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	6 cut(s)	20, 168, 178, 539, 655, 1020
Van91I	CCANNNNNTGG	2 cut(s)	173, 887
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	3 cut(s)	513, 883, 935
XbaI	TCTAGA	1 cut(s)	974
XceI	RCATGY	1 cut(s)	309
XhoI	CTCGAG	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	463
XmnI	GAANNNNTTC	2 cut(s)	679, 915
XspI	CTAG	2 cut(s)	180, 975
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.