pycom12g13010

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
15508004 .. 15509557
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g13010.1

Sequence Viewer

Length: 1554 bp
ATGAGCACATGTCTGGAATCTGCAACACTAGGCACCACAACTCTTGGAAATGAGACGGATCGCCAGGCGCTTCTCGACTTCAAGAAAAGAATCACTGAAGATCCTCTCCATGTCATGAGCTCGTGGAATGATTCCATTGATTTCTGCAGTTGGGTTGGCGTTACATGCAACCGCGCCACCAAAAGGGTTTTGATTCTGAATCTCAAGTCTCAAAAATTGGTAGGCTCCTTACCGCCCTCTATAGGCAATCTTACTCATCTTACTGGAATCAACCTGATGGAGAACAACTTTAGTGGTGAAATTCCTGGAGAAATGGGTCGTCTACGAAGCTTGCAACATCTCAACCTGTCTTACAATTCATTTGGCGGGAAAATTCCAGCAAACATATCTTATTGTACTCAACTTAGAACGCTCCGTCTAGCTGTCAATCAGCTTATTGGTTCGATCCCGGACCAGCTCAGTTCTTTGTTGAATTTGAATTTTCTACTGCTTGATGGTAACAATCTCAGTGGAACAATCCCAGGTTGGATAGGAAACTTTTCATCTTTGAGAAGTCTCTTTCTTTCCCGGAATAATTTTCAAGGGAACATACCCATTGAACTGGGGCATCTAACAGTCTTGCAGAATTTCTCGCTCGGGGAGAATAATTTGTCTGGTATGGTCCCTTCTTCTATCTATAACATTTCTTCCCTGTACATTTTCAGTGTTGTTGGCAACCATATGCATGGAGAGTTACCACCAAATGTCGGCGTTACTCTTCCTAATCTCCAAGCATTTTACTGTGGTGCCAACAACTTCACAGGACCTATTCCTGCATCATTCTCAAATGCTTCTGGACTTCAGATCCTCGATTTTGCGATTAATGGTTTCTCTGGACCATTCCCCGCTGAAAATCTTGGAAGCTTGGGGATCTTGGTTAAAATAAACTTTGGTCGCAATCGACTGGGAAGTGGGGAGAATGGCGACTTGAACTCTTTCAGCTTCTTGACTAATTGTACTAAGTTGAAGGTGTTGGGGCTTGACAATAATCAGTTTGGAGGAGAACTGCCAGGATCTATAGCCAATCTTTCCACTCAACTGACTCTTCTTACTTTCGGAAACAATTTGATACATGGAAGCATCCCCAACGGTCTTGAACATCTTCTGAACTTGACTGGTCTAGGAGTAGAAGATAACTACTTGGGTGGTAGTGTCCCTGATGGCATTGGGAAGCTTCAGAAGTTACAGATACTTGCTTTGGATTACAACCAATTTTCGGTGCCAATCCCGCCCATGCTGGGCAACTTGACTTCAGCTATAAAAATCTACATGAGCAAGAACAGGTTCAACGGCAGGAAACCTCCAAGTCTTGGGAATTGTCAAAATCTCATATCACTTGACCTTTCTAGTAACAATCTAACGGGCACCATACCTAAAGAGATTCTTGGGATTTCGTCCCTTTCAATCTATTTGGACATGTCTAACAACTTTTTGACAGGTTCACTACCATCTGAAGTGGGTCATTTGGTAAATCTTGCGGAACTAGATGCATCAGGAAACAAGTTTATCAGGTGA

Protein Analysis

518

Amino Acids

55.63

Weight (kDa)

6.51

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 18 - 57 8.3e-14 Leucine rich repeat N-terminal domain
LRR_14 PF23598 62 - 187 5.9e-08 Leucine-rich repeat region
LRR_14 PF23598 322 - 430 1.5e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 32, 785, 1258, 1403
AccB7I CCANNNNNTGG 1 cut(s) 1349
AccI GTMKAC 1 cut(s) 322
AccII CGCG 1 cut(s) 174
AciI CCGC 6 cut(s) 172, 233, 366, 885, 1268, 1517
AclWI GGATC 6 cut(s) 66, 95, 439, 838, 917, 1060
AcsI RAATTY 5 cut(s) 300, 372, 472, 478, 625
AcuI CTGAAG 5 cut(s) 117, 824, 1199, 1275, 1512
AfaI GTAC 3 cut(s) 397, 695, 997
AfiI CCNNNNNNNGG 6 cut(s) 183, 242, 746, 1255, 1277, 1349
AflIII ACRYGT 2 cut(s) 8, 1455
AjnI CCWGG 4 cut(s) 63, 304, 520, 1048
AluBI AGCT 9 cut(s) 120, 330, 422, 433, 457, 903, 981, 1213, 1295
AluI AGCT 9 cut(s) 120, 330, 422, 433, 457, 903, 981, 1213, 1295
Alw21I GWGCWC 2 cut(s) 8, 122
Alw26I GTCTC 3 cut(s) 47, 213, 560
AlwI GGATC 6 cut(s) 66, 95, 439, 838, 917, 1060
Ama87I CYCGRG 1 cut(s) 635
ApoI RAATTY 5 cut(s) 300, 372, 472, 478, 625
AseI ATTAAT 1 cut(s) 861
Asp700I GAANNNNTTC 4 cut(s) 538, 974, 1140, 1322
AspLEI GCGC 2 cut(s) 70, 176
AspS9I GGNCC 4 cut(s) 451, 661, 803, 875
AsuC2I CCSGG 2 cut(s) 449, 568
AsuHPI GGTGA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 4 cut(s) 451, 661, 803, 875
BaeGI GKGCMC 1 cut(s) 1406
BanI GGYRCC 4 cut(s) 32, 785, 1258, 1403
BanII GRGCYC 1 cut(s) 122
BarI GAAGNNNNNNTAC 2 cut(s) 649, 681
BauI CACGAG 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 8, 122
BccI CCATC 4 cut(s) 271, 488, 1193, 1495
BceAI ACGGC 1 cut(s) 1345
BciT130I CCWGG 4 cut(s) 65, 306, 522, 1050
BcnI CCSGG 2 cut(s) 449, 568
BcoDI GTCTC 3 cut(s) 47, 213, 560
BfaI CTAG 5 cut(s) 29, 419, 1160, 1386, 1523
BfmI CTRYAG 3 cut(s) 145, 240, 1056
BfoI RGCGCY 1 cut(s) 71
Bme1390I CCNGG 6 cut(s) 65, 306, 449, 522, 568, 1050
Bme18I GGWCC 4 cut(s) 451, 661, 803, 875
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 4 cut(s) 451, 661, 803, 875
BmiI GGNNCC 6 cut(s) 34, 226, 663, 787, 1260, 1405
BmrFI CCNGG 6 cut(s) 65, 306, 449, 522, 568, 1050
BmrI ACTGGG 2 cut(s) 611, 953
BmsI GCATC 5 cut(s) 616, 824, 1128, 1516, 1538
BmuI ACTGGG 2 cut(s) 611, 953
BpmI CTGGAG 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 2 cut(s) 449, 568
BsaJI CCNNGG 1 cut(s) 520
Bsc4I CCNNNNNNNGG 6 cut(s) 183, 242, 746, 1255, 1277, 1349
Bse1I ACTGG 4 cut(s) 268, 606, 948, 1159
BseBI CCWGG 4 cut(s) 65, 306, 522, 1050
BseDI CCNNGG 1 cut(s) 520
BseGI GGATG 1 cut(s) 1119
BseLI CCNNNNNNNGG 6 cut(s) 183, 242, 746, 1255, 1277, 1349
BseMII CTCAG 2 cut(s) 472, 520
BseNI ACTGG 4 cut(s) 268, 606, 948, 1159
BseRI GAGGAG 1 cut(s) 1053
BseSI GKGCMC 1 cut(s) 1406
BseYI CCCAGC 1 cut(s) 1276
Bsh1236I CGCG 1 cut(s) 174
BshNI GGYRCC 4 cut(s) 32, 785, 1258, 1403
BsiHKAI GWGCWC 2 cut(s) 8, 122
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 2 cut(s) 449, 568
BslFI GGGAC 3 cut(s) 647, 1178, 1420
BslI CCNNNNNNNGG 6 cut(s) 183, 242, 746, 1255, 1277, 1349
BsmAI GTCTC 3 cut(s) 47, 213, 560
BsmBI CGTCTC 1 cut(s) 47
BsmFI GGGAC 3 cut(s) 647, 1178, 1420
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 3 cut(s) 8, 122, 1406
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 6 cut(s) 58, 100, 444, 843, 909, 1052
BspACI CCGC 6 cut(s) 172, 233, 366, 885, 1268, 1517
BspCNI CTCAG 2 cut(s) 471, 519
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 6 cut(s) 34, 226, 663, 787, 1260, 1405
BspMAI CTGCAG 1 cut(s) 149
BspPI GGATC 6 cut(s) 66, 95, 439, 838, 917, 1060
BspT107I GGYRCC 4 cut(s) 32, 785, 1258, 1403
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 4 cut(s) 268, 606, 948, 1159
BssECI CCNNGG 1 cut(s) 520
BssMI GATC 6 cut(s) 58, 100, 444, 843, 909, 1052
BssSI CACGAG 1 cut(s) 121
Bst2BI CACGAG 1 cut(s) 121
Bst2UI CCWGG 4 cut(s) 65, 306, 522, 1050
Bst4CI ACNGT 3 cut(s) 616, 782, 1130
Bst6I CTCTTC 2 cut(s) 762, 1089
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 4 cut(s) 404, 458, 506, 999
BstF5I GGATG 1 cut(s) 1119
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 176
BstKTI GATC 6 cut(s) 61, 103, 447, 846, 912, 1055
BstMAI GTCTC 3 cut(s) 47, 213, 560
BstMBI GATC 6 cut(s) 58, 100, 444, 843, 909, 1052
BstMWI GCNNNNNNNGC 2 cut(s) 165, 1267
BstNI CCWGG 4 cut(s) 65, 306, 522, 1050
BstNSI RCATGY 3 cut(s) 12, 168, 1459
BstSCI CCNGG 6 cut(s) 63, 304, 447, 520, 566, 1048
BstSFI CTRYAG 3 cut(s) 145, 240, 1056
BstSLI GKGCMC 1 cut(s) 1406
BstUI CGCG 1 cut(s) 174
BstX2I RGATCY 4 cut(s) 100, 843, 909, 1052
BstXI CCANNNNNNTGG 2 cut(s) 601, 725
BstYI RGATCY 4 cut(s) 100, 843, 909, 1052
BtsCI GGATG 1 cut(s) 1119
BtsIMutI CAGTG 3 cut(s) 93, 514, 709
Cac8I GCNNGC 1 cut(s) 332
CciI TCATGA 1 cut(s) 114
CfoI GCGC 2 cut(s) 70, 176
Cfr13I GGNCC 4 cut(s) 451, 661, 803, 875
Csp6I GTAC 3 cut(s) 396, 694, 996
CspCI CAANNNNNGTGG 6 cut(s) 25, 60, 274, 309, 490, 525
CviAII CATG 9 cut(s) 9, 110, 115, 165, 725, 1112, 1273, 1309, 1456
CviQI GTAC 3 cut(s) 396, 694, 996
DdeI CTNAG 4 cut(s) 404, 458, 506, 999
DpnI GATC 6 cut(s) 60, 102, 446, 845, 911, 1054
DpnII GATC 6 cut(s) 58, 100, 444, 843, 909, 1052
Eam1104I CTCTTC 2 cut(s) 762, 1089
EarI CTCTTC 2 cut(s) 762, 1089
Ecl136II GAGCTC 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 4 cut(s) 451, 661, 803, 875
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 5 cut(s) 117, 824, 1199, 1275, 1512
Eco88I CYCGRG 1 cut(s) 635
EcoICRI GAGCTC 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 803
EcoRII CCWGG 4 cut(s) 63, 304, 520, 1048
EcoT22I ATGCAT 2 cut(s) 726, 1531
EcoT38I GRGCYC 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 47
FaeI CATG 9 cut(s) 12, 113, 118, 168, 728, 1115, 1276, 1312, 1459
FalI AAGNNNNNCTT 2 cut(s) 1407, 1439
FaqI GGGAC 3 cut(s) 647, 1178, 1420
FatI CATG 9 cut(s) 8, 109, 114, 164, 724, 1111, 1272, 1308, 1455
FauI CCCGC 3 cut(s) 359, 892, 1275
FauNDI CATATG 1 cut(s) 720
FblI GTMKAC 1 cut(s) 322
FokI GGATG 1 cut(s) 1106
FriOI GRGCYC 1 cut(s) 122
FspBI CTAG 5 cut(s) 29, 419, 1160, 1386, 1523
GlaI GCGC 2 cut(s) 69, 175
GsaI CCCAGC 1 cut(s) 1280
GsuI CTGGAG 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 71
HapII CCGG 2 cut(s) 449, 568
HhaI GCGC 2 cut(s) 70, 176
Hin1II CATG 9 cut(s) 12, 113, 118, 168, 728, 1115, 1276, 1312, 1459
Hin6I GCGC 2 cut(s) 68, 174
HinP1I GCGC 2 cut(s) 68, 174
HindIII AAGCTT 3 cut(s) 328, 901, 1211
HinfI GANTC 8 cut(s) 17, 90, 131, 193, 199, 267, 1081, 1420
HpaII CCGG 2 cut(s) 449, 568
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 2 cut(s) 323, 1481
Hpy188I TCNGA 6 cut(s) 198, 843, 1097, 1146, 1218, 1492
Hpy188III TCNNGA 9 cut(s) 14, 74, 82, 115, 834, 873, 985, 1133, 1533
Hpy8I GTNNAC 2 cut(s) 323, 1481
HpyAV CCTTC 2 cut(s) 675, 1000
HpyCH4III ACNGT 3 cut(s) 616, 782, 1130
HpyCH4V TGCA 8 cut(s) 23, 147, 168, 334, 622, 724, 815, 1529
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 1267
HpyF3I CTNAG 4 cut(s) 404, 458, 506, 999
Hsp92II CATG 9 cut(s) 12, 113, 118, 168, 728, 1115, 1276, 1312, 1459
HspAI GCGC 2 cut(s) 68, 174
Kzo9I GATC 6 cut(s) 58, 100, 444, 843, 909, 1052
LmnI GCTCC 2 cut(s) 230, 417
LweI GCATC 5 cut(s) 616, 824, 1128, 1516, 1538
MaeI CTAG 5 cut(s) 29, 419, 1160, 1386, 1523
MaeIII GTNAC 6 cut(s) 160, 497, 732, 751, 1221, 1388
MalI GATC 6 cut(s) 60, 102, 446, 845, 911, 1054
MboI GATC 6 cut(s) 58, 100, 444, 843, 909, 1052
MboII GAAGA 7 cut(s) 110, 660, 678, 749, 1076, 1133, 1181
MflI RGATCY 4 cut(s) 100, 843, 909, 1052
MhlI GDGCHC 3 cut(s) 8, 122, 1406
MlyI GAGTC 1 cut(s) 1075
MmeI TCCRAC 1 cut(s) 506
MnlI CCTC 5 cut(s) 114, 247, 857, 1031, 1350
Mph1103I ATGCAT 2 cut(s) 726, 1531
MroXI GAANNNNTTC 4 cut(s) 538, 974, 1140, 1322
MseI TTAA 2 cut(s) 861, 918
MslI CAYNNNNRTG 1 cut(s) 723
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 2 cut(s) 449, 568
MspR9I CCNGG 6 cut(s) 65, 306, 449, 522, 568, 1050
MvaI CCWGG 4 cut(s) 65, 306, 522, 1050
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 165, 1267
NciI CCSGG 2 cut(s) 449, 568
NdeI CATATG 1 cut(s) 720
NdeII GATC 6 cut(s) 58, 100, 444, 843, 909, 1052
NlaIII CATG 9 cut(s) 12, 113, 118, 168, 728, 1115, 1276, 1312, 1459
NlaIV GGNNCC 6 cut(s) 34, 226, 663, 787, 1260, 1405
NsiI ATGCAT 2 cut(s) 726, 1531
NspI RCATGY 3 cut(s) 12, 168, 1459
PagI TCATGA 1 cut(s) 114
PciI ACATGT 2 cut(s) 8, 1455
PdmI GAANNNNTTC 4 cut(s) 538, 974, 1140, 1322
PfeI GAWTC 7 cut(s) 17, 90, 131, 193, 199, 267, 1420
PflMI CCANNNNNTGG 1 cut(s) 1349
PfoI TCCNGGA 3 cut(s) 304, 447, 566
PleI GAGTC 1 cut(s) 1075
PpsI GAGTC 1 cut(s) 1075
PpuMI RGGWCCY 1 cut(s) 803
PscI ACATGT 2 cut(s) 8, 1455
PshBI ATTAAT 1 cut(s) 861
Psp124BI GAGCTC 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 803
Psp6I CCWGG 4 cut(s) 63, 304, 520, 1048
PspFI CCCAGC 1 cut(s) 1276
PspGI CCWGG 4 cut(s) 63, 304, 520, 1048
PspN4I GGNNCC 6 cut(s) 34, 226, 663, 787, 1260, 1405
PspPI GGNCC 4 cut(s) 451, 661, 803, 875
PspPPI RGGWCCY 1 cut(s) 803
PstI CTGCAG 1 cut(s) 149
PsuI RGATCY 4 cut(s) 100, 843, 909, 1052
RsaI GTAC 3 cut(s) 397, 695, 997
RsaNI GTAC 3 cut(s) 396, 694, 996
RseI CAYNNNNRTG 1 cut(s) 723
SacI GAGCTC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 861, 918
Sau3AI GATC 6 cut(s) 58, 100, 444, 843, 909, 1052
Sau96I GGNCC 4 cut(s) 451, 661, 803, 875
SchI GAGTC 1 cut(s) 1075
ScrFI CCNGG 6 cut(s) 65, 306, 449, 522, 568, 1050
SduI GDGCHC 3 cut(s) 8, 122, 1406
SfaNI GCATC 5 cut(s) 616, 824, 1128, 1516, 1538
SfcI CTRYAG 3 cut(s) 145, 240, 1056
SinI GGWCC 4 cut(s) 451, 661, 803, 875
SmiMI CAYNNNNRTG 1 cut(s) 723
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SsiI CCGC 6 cut(s) 172, 233, 366, 885, 1268, 1517
SspMI CTAG 5 cut(s) 29, 419, 1160, 1386, 1523
SstI GAGCTC 1 cut(s) 122
StyD4I CCNGG 6 cut(s) 63, 304, 447, 520, 566, 1048
TaaI ACNGT 3 cut(s) 616, 782, 1130
TaqI TCGA 4 cut(s) 75, 443, 849, 940
TatI WGTACW 3 cut(s) 395, 693, 995
TfiI GAWTC 7 cut(s) 17, 90, 131, 193, 199, 267, 1420
Tru1I TTAA 2 cut(s) 861, 918
Tru9I TTAA 2 cut(s) 861, 918
TscAI CASTG 3 cut(s) 100, 514, 709
TspDTI ATGAA 2 cut(s) 348, 531
TspGWI ACGGA 2 cut(s) 71, 404
TspRI CASTG 3 cut(s) 100, 514, 709
Van91I CCANNNNNTGG 1 cut(s) 1349
VpaK11BI GGWCC 4 cut(s) 451, 661, 803, 875
VspI ATTAAT 1 cut(s) 861
XapI RAATTY 5 cut(s) 300, 372, 472, 478, 625
XceI RCATGY 3 cut(s) 12, 168, 1459
XmiI GTMKAC 1 cut(s) 322
XmnI GAANNNNTTC 4 cut(s) 538, 974, 1140, 1322
XspI CTAG 5 cut(s) 29, 419, 1160, 1386, 1523
Zsp2I ATGCAT 2 cut(s) 726, 1531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.