Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008883

Physical Location & Seq

Genomic Coordinates Reverse (-)

18636068 .. 18642397

Gene Structure 6330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCATGATGAGCACATGTCCGGAATCTGCTGCATTTCCCACCCTACCCTGCTTGGAAACGAATCTGATCGATTGGCTTTGCTAGACTTCAAGAAAAGAATAACTGAAGATCCCCTCAGTGTCATGAGCTCGTGGAATCATTCCATCCACTTCTGCAGTTGGGTAGGCATTACATGCCACCGTGCCACCCAAAGAGTCTTGATTCTGGACCTGCAAGATAAACAATTGGTAGGCTCCATTCCACCTTCCATTGGGAATCTTACTCGTCTAATTGAAATAAGCTTGGGAATCAACAAGTTTCATGGTGAAATTCCTCAAGAATTGGGTCGACTGCGGACCTTGGAAAGTCTCAACCTGTCTTTCAATTCTTTCGGCGGGAAACTTCCGACTAATATGTCCCACTGTACACAACTCAGATTTTTGGATCTTTTTTCCAACAAGATTATTGGGTCAATTCCACGCCAACTCAGTTCATGGTTGAGTTTGACTGTTCTACAACTTGGAAAAAATAATCTCAGTGGAACCATCCCAGGTTGGATAGGAAATTTTTCTTCTTTGAGGAGTCTTAGACTTGGCGGCAACAATTTTCAAGGAAGCATACCAAATGAGCTCGGGCATATAACAACCTTGGAATTATTCATAGTTGGGGACAATAATTTGTCTGGTATGCTCCCTTCTTCAATTTATAATATTTCTTCCATATACATATTCGGTGTTTTTTTGAACCATTTCCATGGAGAGCTACCACCAAATCTCGGCATCTTGCTTCCTAATCTCGTAAAATTTTACTGTGATATAAACAATTTCACAGGAAATATTCCTGTATCATTGTCAAATGCTTCTAGACTTCAGAAGATTGATTTTGCTGGAAATGACTTCACGGGGACTATCCCTGGAGAAAGTCTCGGAAGCTTGCGAAGCTTACTTGTGCTAAACCTTTTAAACAATCGACTGGGAAATGGAAAACTTGGTGATATGAGTTTTCTCAATTTCTTGACTAATTGTACTAGTCTTCAACATCTGGGTCTTAGCACTAATCGTTTTGGGGGAGAAATCCAGATCGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

357

Amino Acids

39.19

Weight (kDa)

7.19

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	21 - 59	2.9e-12	Leucine rich repeat N-terminal domain
LRR_8	PF13855	161 - 220	9.1e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008883)

Species	Orthologous Gene IDs
malus_domestica	MD03G1225100.v1.1 MD04G1149900.v1.1 MD04G1156300.v1.1 MD04G1157600.v1.1 MD04G1157800.v1.1 MD04G1158300.v1.1 MD04G1158700.v1.1 MD05G1075700.v1.1 MD07G1165000.v1.1 MD12G1130600.v1.1 MD12G1134600.v1.1 MD12G1134900.v1.1 MD12G1135400.v1.1 MD12G1136000.v1.1 MD12G1170300.v1.1 MD12G1170900.v1.1 MD13G1275400.v1.1
pyrus_communis	pycom12g10490 pycom12g12990 pycom12g13010 pycom12g16250
rosa_chinensis	RchiOBHm_Chr1g0356231
rosa_rugosa	Rorug03G0064300.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	687
AasI	GACNNNNNNGTC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	328
AccIII	TCCGGA	1 cut(s)	20
AciI	CCGC	3 cut(s)	334, 375, 576
AclWI	GGATC	3 cut(s)	104, 432, 1058
AcsI	RAATTY	3 cut(s)	309, 544, 782
AcuI	CTGAAG	2 cut(s)	126, 833
AfaI	GTAC	2 cut(s)	406, 1006
AfiI	CCNNNNNNNGG	2 cut(s)	251, 755
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	7 cut(s)	91, 275, 364, 590, 681, 724, 1016
AhlI	ACTAGT	1 cut(s)	1007
AjnI	CCWGG	2 cut(s)	529, 892
AluBI	AGCT	6 cut(s)	129, 282, 610, 742, 912, 921
AluI	AGCT	6 cut(s)	129, 282, 610, 742, 912, 921
Alw21I	GWGCWC	3 cut(s)	15, 131, 612
Alw26I	GTCTC	2 cut(s)	353, 908
AlwI	GGATC	3 cut(s)	104, 432, 1058
Ama87I	CYCGRG	1 cut(s)	611
Aor13HI	TCCGGA	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	3 cut(s)	309, 544, 782
Asp700I	GAANNNNTTC	2 cut(s)	547, 728
AspS9I	GGNCC	2 cut(s)	208, 336
AsuHPI	GGTGA	2 cut(s)	317, 983
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	2 cut(s)	208, 336
BanII	GRGCYC	2 cut(s)	131, 612
BarI	GAAGNNNNNNTAC	2 cut(s)	658, 690
BauI	CACGAG	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	1004
Bbv12I	GWGCWC	3 cut(s)	15, 131, 612
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	152, 533
BciT130I	CCWGG	2 cut(s)	531, 894
BcoDI	GTCTC	2 cut(s)	353, 908
BcuI	ACTAGT	1 cut(s)	1007
BfaI	CTAG	3 cut(s)	83, 843, 1008
BfmI	CTRYAG	1 cut(s)	154
BfuAI	ACCTGC	1 cut(s)	219
BisI	GCNGC	2 cut(s)	31, 577
BlsI	GCNGC	2 cut(s)	32, 578
Bme1390I	CCNGG	2 cut(s)	531, 894
Bme18I	GGWCC	2 cut(s)	208, 336
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	2 cut(s)	208, 336
BmiI	GGNNCC	2 cut(s)	235, 523
BmrFI	CCNGG	2 cut(s)	531, 894
BmrI	ACTGGG	1 cut(s)	962
BmsI	GCATC	1 cut(s)	768
BmuI	ACTGGG	1 cut(s)	962
BpiI	GAAGAC	1 cut(s)	1004
BplI	GAGNNNNNCTC	2 cut(s)	888, 920
BpmI	CTGGAG	1 cut(s)	915
BpuEI	CTTGAG	1 cut(s)	300
Bsa29I	ATCGAT	2 cut(s)	70, 1062
BsaJI	CCNNGG	5 cut(s)	339, 529, 627, 733, 892
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 755
Bse1I	ACTGG	1 cut(s)	957
BseAI	TCCGGA	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	531, 894
BseCI	ATCGAT	2 cut(s)	70, 1062
BseDI	CCNNGG	5 cut(s)	339, 529, 627, 733, 892
BseGI	GGATG	2 cut(s)	144, 525
BseLI	CCNNNNNNNGG	2 cut(s)	251, 755
BseMII	CTCAG	4 cut(s)	130, 427, 481, 529
BseNI	ACTGG	1 cut(s)	957
BseRI	GAGGAG	1 cut(s)	574
BseXI	GCAGC	1 cut(s)	17
BshVI	ATCGAT	2 cut(s)	70, 1062
BsiHKAI	GWGCWC	3 cut(s)	15, 131, 612
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	3 cut(s)	382, 662, 898
BslI	CCNNNNNNNGG	2 cut(s)	251, 755
BsmAI	GTCTC	2 cut(s)	353, 908
BsmFI	GGGAC	3 cut(s)	382, 662, 898
BsoBI	CYCGRG	1 cut(s)	611
Bsp1286I	GDGCHC	3 cut(s)	15, 131, 612
Bsp13I	TCCGGA	1 cut(s)	20
Bsp1407I	TGTACA	1 cut(s)	404
Bsp143I	GATC	5 cut(s)	67, 109, 424, 1059, 1063
Bsp19I	CCATGG	1 cut(s)	733
BspACI	CCGC	3 cut(s)	334, 375, 576
BspCNI	CTCAG	4 cut(s)	129, 426, 480, 528
BspDI	ATCGAT	2 cut(s)	70, 1062
BspEI	TCCGGA	1 cut(s)	20
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	235, 523
BspMAI	CTGCAG	1 cut(s)	158
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	3 cut(s)	104, 432, 1058
BsrGI	TGTACA	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	957
BssECI	CCNNGG	5 cut(s)	339, 529, 627, 733, 892
BssMI	GATC	5 cut(s)	67, 109, 424, 1059, 1063
BssSI	CACGAG	1 cut(s)	130
BssT1I	CCWWGG	3 cut(s)	339, 627, 733
Bst2BI	CACGAG	1 cut(s)	130
Bst2UI	CCWGG	2 cut(s)	531, 894
Bst4CI	ACNGT	4 cut(s)	182, 404, 490, 791
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstAUI	TGTACA	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	914
BstDEI	CTNAG	6 cut(s)	116, 413, 467, 515, 566, 1028
BstDSI	CCRYGG	1 cut(s)	733
BstF5I	GGATG	2 cut(s)	144, 525
BstKTI	GATC	5 cut(s)	70, 112, 427, 1062, 1066
BstMAI	GTCTC	2 cut(s)	353, 908
BstMBI	GATC	5 cut(s)	67, 109, 424, 1059, 1063
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 174, 918
BstNI	CCWGG	2 cut(s)	531, 894
BstNSI	RCATGY	2 cut(s)	19, 177
BstSCI	CCNGG	2 cut(s)	529, 892
BstSFI	CTRYAG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	1004
BstX2I	RGATCY	2 cut(s)	109, 424
BstXI	CCANNNNNNTGG	1 cut(s)	734
BstYI	RGATCY	2 cut(s)	109, 424
Bsu15I	ATCGAT	2 cut(s)	70, 1062
BsuTUI	ATCGAT	2 cut(s)	70, 1062
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	2 cut(s)	144, 525
BtsIMutI	CAGTG	3 cut(s)	124, 400, 523
BveI	ACCTGC	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	914
CciI	TCATGA	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	208, 336
ClaI	ATCGAT	2 cut(s)	70, 1062
Csp6I	GTAC	2 cut(s)	405, 1005
CviAII	CATG	7 cut(s)	5, 16, 124, 174, 302, 474, 734
CviJI	RGCY	8 cut(s)	77, 129, 234, 282, 610, 742, 912, 921
CviKI_1	RGCY	8 cut(s)	77, 129, 234, 282, 610, 742, 912, 921
CviQI	GTAC	2 cut(s)	405, 1005
DdeI	CTNAG	6 cut(s)	116, 413, 467, 515, 566, 1028
DpnI	GATC	5 cut(s)	69, 111, 426, 1061, 1065
DpnII	GATC	5 cut(s)	67, 109, 424, 1059, 1063
DraI	TTTAAA	1 cut(s)	942
DrdI	GACNNNNNNGTC	1 cut(s)	394
DseDI	GACNNNNNNGTC	1 cut(s)	394
Ecl136II	GAGCTC	2 cut(s)	129, 610
Eco130I	CCWWGG	3 cut(s)	339, 627, 733
Eco24I	GRGCYC	2 cut(s)	131, 612
Eco47I	GGWCC	2 cut(s)	208, 336
Eco53kI	GAGCTC	2 cut(s)	129, 610
Eco57I	CTGAAG	2 cut(s)	126, 833
Eco88I	CYCGRG	1 cut(s)	611
EcoICRI	GAGCTC	2 cut(s)	129, 610
EcoRII	CCWGG	2 cut(s)	529, 892
EcoT14I	CCWWGG	3 cut(s)	339, 627, 733
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	131, 612
ErhI	CCWWGG	3 cut(s)	339, 627, 733
FaeI	CATG	7 cut(s)	8, 19, 127, 177, 305, 477, 737
FaqI	GGGAC	3 cut(s)	382, 662, 898
FatI	CATG	7 cut(s)	4, 15, 123, 173, 301, 473, 733
FauI	CCCGC	1 cut(s)	368
FblI	GTMKAC	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	31, 577
FokI	GGATG	2 cut(s)	131, 512
FriOI	GRGCYC	2 cut(s)	131, 612
Fsp4HI	GCNGC	2 cut(s)	31, 577
FspBI	CTAG	3 cut(s)	83, 843, 1008
GluI	GCNGC	2 cut(s)	31, 577
GsuI	CTGGAG	1 cut(s)	915
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	7 cut(s)	8, 19, 127, 177, 305, 477, 737
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HindIII	AAGCTT	3 cut(s)	280, 910, 919
HinfI	GANTC	8 cut(s)	24, 62, 136, 195, 202, 256, 288, 562
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	317, 983
Hpy166II	GTNNAC	2 cut(s)	329, 407
Hpy188I	TCNGA	5 cut(s)	67, 387, 416, 852, 908
Hpy188III	TCNNGA	9 cut(s)	21, 91, 124, 199, 206, 317, 843, 994, 1057
Hpy8I	GTNNAC	2 cut(s)	329, 407
HpyAV	CCTTC	2 cut(s)	255, 684
HpyCH4III	ACNGT	4 cut(s)	182, 404, 490, 791
HpyCH4V	TGCA	4 cut(s)	4, 33, 156, 214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 174, 918
HpyF3I	CTNAG	6 cut(s)	116, 413, 467, 515, 566, 1028
Hsp92II	CATG	7 cut(s)	8, 19, 127, 177, 305, 477, 737
Kpn2I	TCCGGA	1 cut(s)	20
Kzo9I	GATC	5 cut(s)	67, 109, 424, 1059, 1063
LmnI	GCTCC	2 cut(s)	239, 675
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	768
MaeI	CTAG	3 cut(s)	83, 843, 1008
MalI	GATC	5 cut(s)	69, 111, 426, 1061, 1065
MboI	GATC	5 cut(s)	67, 109, 424, 1059, 1063
MboII	GAAGA	6 cut(s)	119, 543, 669, 687, 865, 1004
MfeI	CAATTG	1 cut(s)	224
MflI	RGATCY	2 cut(s)	109, 424
MhlI	GDGCHC	3 cut(s)	15, 131, 612
MlyI	GAGTC	2 cut(s)	204, 571
MmeI	TCCRAC	3 cut(s)	410, 459, 515
MnlI	CCTC	3 cut(s)	125, 324, 552
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	20
MroXI	GAANNNNTTC	2 cut(s)	547, 728
MseI	TTAA	1 cut(s)	941
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	531, 894
MunI	CAATTG	1 cut(s)	224
MvaI	CCWGG	2 cut(s)	531, 894
MwoI	GCNNNNNNNGC	3 cut(s)	10, 174, 918
NcoI	CCATGG	1 cut(s)	733
NdeII	GATC	5 cut(s)	67, 109, 424, 1059, 1063
NlaIII	CATG	7 cut(s)	8, 19, 127, 177, 305, 477, 737
NlaIV	GGNNCC	2 cut(s)	235, 523
NmeAIII	GCCGAG	1 cut(s)	735
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	19, 177
PagI	TCATGA	1 cut(s)	123
PciI	ACATGT	1 cut(s)	15
PdmI	GAANNNNTTC	2 cut(s)	547, 728
PfeI	GAWTC	6 cut(s)	24, 62, 136, 202, 256, 288
PkrI	GCNGC	2 cut(s)	32, 578
PleI	GAGTC	2 cut(s)	203, 570
PpsI	GAGTC	2 cut(s)	203, 570
PscI	ACATGT	1 cut(s)	15
PsiI	TTATAA	1 cut(s)	687
Psp124BI	GAGCTC	2 cut(s)	131, 612
Psp6I	CCWGG	2 cut(s)	529, 892
PspGI	CCWGG	2 cut(s)	529, 892
PspN4I	GGNNCC	2 cut(s)	235, 523
PspPI	GGNCC	2 cut(s)	208, 336
PstI	CTGCAG	1 cut(s)	158
PsuI	RGATCY	2 cut(s)	109, 424
RsaI	GTAC	2 cut(s)	406, 1006
RsaNI	GTAC	2 cut(s)	405, 1005
RseI	CAYNNNNRTG	1 cut(s)	732
SacI	GAGCTC	2 cut(s)	131, 612
SalI	GTCGAC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	941
SatI	GCNGC	2 cut(s)	31, 577
Sau3AI	GATC	5 cut(s)	67, 109, 424, 1059, 1063
Sau96I	GGNCC	2 cut(s)	208, 336
SchI	GAGTC	2 cut(s)	204, 571
ScrFI	CCNGG	2 cut(s)	531, 894
SduI	GDGCHC	3 cut(s)	15, 131, 612
SfaNI	GCATC	1 cut(s)	768
SfcI	CTRYAG	1 cut(s)	154
SinI	GGWCC	2 cut(s)	208, 336
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	1007
SsiI	CCGC	3 cut(s)	334, 375, 576
SspI	AATATT	2 cut(s)	691, 817
SspMI	CTAG	3 cut(s)	83, 843, 1008
SstI	GAGCTC	2 cut(s)	131, 612
StyD4I	CCNGG	2 cut(s)	529, 892
StyI	CCWWGG	3 cut(s)	339, 627, 733
TaaI	ACNGT	4 cut(s)	182, 404, 490, 791
TaqI	TCGA	4 cut(s)	70, 328, 949, 1062
TatI	WGTACW	2 cut(s)	404, 1004
TauI	GCSGC	1 cut(s)	579
TfiI	GAWTC	6 cut(s)	24, 62, 136, 202, 256, 288
Tru1I	TTAA	1 cut(s)	941
Tru9I	TTAA	1 cut(s)	941
TscAI	CASTG	3 cut(s)	124, 407, 523
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	3 cut(s)	290, 462, 628
TspRI	CASTG	3 cut(s)	124, 407, 523
VpaK11BI	GGWCC	2 cut(s)	208, 336
XapI	RAATTY	3 cut(s)	309, 544, 782
XbaI	TCTAGA	1 cut(s)	842
XceI	RCATGY	2 cut(s)	19, 177
XmiI	GTMKAC	1 cut(s)	328
XmnI	GAANNNNTTC	2 cut(s)	547, 728
XspI	CTAG	3 cut(s)	83, 843, 1008
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.