Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008883

Physical Location & Seq

Genomic Coordinates Reverse (-)

25170828 .. 25174278

Gene Structure 3451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1170900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGATGGAGCATTCACGTACTATTCGTCATTTGGTTTTGTTGAAATTCATGCCTGGCTTCTTTCTCTTAGTCTTATACATGATGAGCACATGTCCGGAATCTGCAGCATTTCCCAGCCCTACCCTGCTTGGAAACGAGTCTGATCGCTTGGCTTTGCTAGACTTCAAGAAAAGAATAACTGAAGATCCTCTCAGTGTCATGAGCTCGTGGAATCATTCCATCCACTTCTGCAGTTGGGTGGGCATTACATGCCACCGTGCCACTCAAAGAGTCTTGATTCTGGACCTGGAAGATAAACAATTGGTAGGCTCCATCCCACCTTCCATTGGGAATCTTACTCGTCTAATTGAAATAAGCTTGGGAAGCAACAAGTTTCATGGTGAAATTCCTCAAGAATTGGGTCGTCTACGTACCCTGGAAAGTCTCAACCTGTCTATCAATTCTTTAGGCGGGAAAATTCCGACTAATATGTCTCACTGTACACAACTGAGAGTTTTCGATCTTGCTTCCAATAAGATTATTGGGTCGATTCCACACCAACTCAGTTCATGGTTGAGTTTAACTGTTCTACATCTTAGAAGTAATAATCTCAGTGGAACCATCCCAGGTTGGATAGGAAACTTTTCTTCATTGTGGAGTCTTAGACTTGGCCGCAACAATTTTCAAGGAAGCATACCAAATGAGCTCGGGCATATAACAACCTTGAAGATATTCGCAGTTGGGGAGAATAATTTGTCTGAGTACGGCTTGGGAGGCCAAGTTTCCATACTGGGAGATGTTTATAGCTACGGGATACTCTTGCTAGAAATGTTCACAGGAAAAACACCTACTGATGACATGTTCATCGAAGGTCTAAGCATTTACAAATTCGCAGCCATGGCTTTGCCCGACCATGTCATGGACGTTGTTGACCCTGCATTGCTCCTCGACCTCGAAGCTGATGGTAGTGTTAACGATGGAAAATACGAAAGGATTAGGCTGCCCAGACGTAACAATCGCGGAGTGGTGAAAGCAAAAAAGGTAGAGGAATGCTTGTTTGCTGTGATGCAGATAGGACTCTCCTGCTGTGTAGGATCACCAAGGGAGCGGATGCTTCTGAATATGGTTGTCGGAAAAATGAATGCAATTAGAGACTCGTACCTCAATGTTCAAGAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

387

Amino Acids

42.87

Weight (kDa)

7.16

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	46 - 84	3.2e-12	Leucine rich repeat N-terminal domain
LRR_8	PF13855	162 - 221	1.7e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008883)

Species	Orthologous Gene IDs
malus_domestica	MD03G1225100.v1.1 MD04G1149900.v1.1 MD04G1156300.v1.1 MD04G1157600.v1.1 MD04G1157800.v1.1 MD04G1158300.v1.1 MD04G1158700.v1.1 MD05G1075700.v1.1 MD07G1165000.v1.1 MD12G1130600.v1.1 MD12G1134600.v1.1 MD12G1134900.v1.1 MD12G1135400.v1.1 MD12G1136000.v1.1 MD12G1170300.v1.1 MD12G1170900.v1.1 MD13G1275400.v1.1
pyrus_communis	pycom12g10490 pycom12g12990 pycom12g13010 pycom12g16250
rosa_chinensis	RchiOBHm_Chr1g0356231
rosa_rugosa	Rorug03G0064300.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	469
AccB7I	CCANNNNNTGG	1 cut(s)	898
AccBSI	CCGCTC	1 cut(s)	1087
AccI	GTMKAC	1 cut(s)	406
AccII	CGCG	1 cut(s)	999
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	4 cut(s)	450, 652, 999, 1087
AclWI	GGATC	2 cut(s)	179, 1081
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	4 cut(s)	44, 384, 456, 866
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	5 cut(s)	19, 412, 481, 743, 1139
AfiI	CCNNNNNNNGG	2 cut(s)	326, 898
AflIII	ACRYGT	2 cut(s)	89, 837
AgsI	TTSAA	6 cut(s)	43, 166, 350, 665, 706, 1151
AjnI	CCWGG	4 cut(s)	52, 285, 414, 604
AluBI	AGCT	5 cut(s)	204, 357, 685, 786, 938
AluI	AGCT	5 cut(s)	204, 357, 685, 786, 938
Alw21I	GWGCWC	3 cut(s)	89, 206, 687
Alw26I	GTCTC	3 cut(s)	428, 477, 1125
AlwI	GGATC	2 cut(s)	179, 1081
Ama87I	CYCGRG	1 cut(s)	686
Aor13HI	TCCGGA	1 cut(s)	94
AoxI	GGCC	2 cut(s)	649, 754
ApeKI	GCWGC	3 cut(s)	104, 872, 979
ApoI	RAATTY	4 cut(s)	44, 384, 456, 866
Asp700I	GAANNNNTTC	2 cut(s)	622, 710
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	392, 1018, 1068
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	283
BanII	GRGCYC	2 cut(s)	206, 687
BauI	CACGAG	1 cut(s)	205
Bbv12I	GWGCWC	3 cut(s)	89, 206, 687
BbvI	GCAGC	3 cut(s)	116, 884, 966
BccI	CCATC	5 cut(s)	227, 320, 608, 935, 950
BceAI	ACGGC	1 cut(s)	760
BciT130I	CCWGG	4 cut(s)	54, 287, 416, 606
BciVI	GTATCC	1 cut(s)	786
BcoDI	GTCTC	3 cut(s)	428, 477, 1125
BfaI	CTAG	2 cut(s)	158, 803
BfmI	CTRYAG	2 cut(s)	102, 229
BfuI	GTATCC	1 cut(s)	786
BisI	GCNGC	4 cut(s)	105, 652, 873, 980
BlsI	GCNGC	4 cut(s)	106, 653, 874, 981
Bme1390I	CCNGG	4 cut(s)	54, 287, 416, 606
Bme18I	GGWCC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	2 cut(s)	310, 598
BmrFI	CCNGG	4 cut(s)	54, 287, 416, 606
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	2 cut(s)	1035, 1080
BmuI	ACTGGG	1 cut(s)	779
BpuEI	CTTGAG	1 cut(s)	375
BsaAI	YACGTR	2 cut(s)	17, 410
BsaJI	CCNNGG	4 cut(s)	414, 604, 876, 1079
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	744, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 898
Bse1I	ACTGG	1 cut(s)	774
Bse3DI	GCAATG	1 cut(s)	917
BseAI	TCCGGA	1 cut(s)	94
BseBI	CCWGG	4 cut(s)	54, 287, 416, 606
BseDI	CCNNGG	4 cut(s)	414, 604, 876, 1079
BseGI	GGATG	4 cut(s)	219, 312, 600, 1095
BseLI	CCNNNNNNNGG	2 cut(s)	326, 898
BseMI	GCAATG	1 cut(s)	917
BseMII	CTCAG	5 cut(s)	205, 479, 556, 604, 729
BseNI	ACTGG	1 cut(s)	774
BseRI	GAGGAG	1 cut(s)	914
BseXI	GCAGC	3 cut(s)	116, 884, 966
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	999
BshFI	GGCC	2 cut(s)	651, 756
BsiHKAI	GWGCWC	3 cut(s)	89, 206, 687
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	326, 898
BsmAI	GTCTC	3 cut(s)	428, 477, 1125
BsmI	GAATGC	3 cut(s)	10, 1034, 1126
BsnI	GGCC	2 cut(s)	651, 756
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	3 cut(s)	89, 206, 687
Bsp13I	TCCGGA	1 cut(s)	94
Bsp1407I	TGTACA	1 cut(s)	479
Bsp143I	GATC	4 cut(s)	142, 184, 499, 1073
Bsp19I	CCATGG	1 cut(s)	876
BspACI	CCGC	4 cut(s)	450, 652, 999, 1087
BspANI	GGCC	2 cut(s)	651, 756
BspCNI	CTCAG	5 cut(s)	204, 480, 555, 603, 730
BspEI	TCCGGA	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	999
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	310, 598
BspMAI	CTGCAG	2 cut(s)	106, 233
BspPI	GGATC	2 cut(s)	179, 1081
BsrBI	CCGCTC	1 cut(s)	1087
BsrDI	GCAATG	1 cut(s)	917
BsrGI	TGTACA	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	774
BssECI	CCNNGG	4 cut(s)	414, 604, 876, 1079
BssMI	GATC	4 cut(s)	142, 184, 499, 1073
BssSI	CACGAG	1 cut(s)	205
BssT1I	CCWWGG	2 cut(s)	876, 1079
Bst2BI	CACGAG	1 cut(s)	205
Bst2UI	CCWGG	4 cut(s)	54, 287, 416, 606
Bst4CI	ACNGT	3 cut(s)	257, 479, 565
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstAUI	TGTACA	1 cut(s)	479
BstBAI	YACGTR	2 cut(s)	17, 410
BstDEI	CTNAG	9 cut(s)	67, 191, 488, 542, 575, 590, 641, 738, 854
BstDSI	CCRYGG	1 cut(s)	876
BstF5I	GGATG	4 cut(s)	219, 312, 600, 1095
BstFNI	CGCG	1 cut(s)	999
BstKTI	GATC	4 cut(s)	145, 187, 502, 1076
BstMAI	GTCTC	3 cut(s)	428, 477, 1125
BstMBI	GATC	4 cut(s)	142, 184, 499, 1073
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 363, 753, 878
BstNI	CCWGG	4 cut(s)	54, 287, 416, 606
BstNSI	RCATGY	3 cut(s)	93, 252, 841
BstSCI	CCNGG	4 cut(s)	52, 285, 414, 604
BstSFI	CTRYAG	2 cut(s)	102, 229
BstSNI	TACGTA	1 cut(s)	410
BstUI	CGCG	1 cut(s)	999
BstV1I	GCAGC	3 cut(s)	116, 884, 966
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuI	GTATCC	1 cut(s)	786
BsuRI	GGCC	2 cut(s)	651, 756
BtgI	CCRYGG	1 cut(s)	876
BtsCI	GGATG	4 cut(s)	219, 312, 600, 1095
BtsIMutI	CAGTG	3 cut(s)	199, 475, 598
CciI	TCATGA	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	5 cut(s)	18, 411, 480, 742, 1138
CviQI	GTAC	5 cut(s)	18, 411, 480, 742, 1138
DdeI	CTNAG	9 cut(s)	67, 191, 488, 542, 575, 590, 641, 738, 854
DpnI	GATC	4 cut(s)	144, 186, 501, 1075
DpnII	GATC	4 cut(s)	142, 184, 499, 1073
DrdI	GACNNNNNNGTC	1 cut(s)	469
DseDI	GACNNNNNNGTC	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	649
Ecl136II	GAGCTC	2 cut(s)	204, 685
Eco105I	TACGTA	1 cut(s)	410
Eco130I	CCWWGG	2 cut(s)	876, 1079
Eco24I	GRGCYC	2 cut(s)	206, 687
Eco47I	GGWCC	1 cut(s)	283
Eco53kI	GAGCTC	2 cut(s)	204, 685
Eco57I	CTGAAG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	686
EcoICRI	GAGCTC	2 cut(s)	204, 685
EcoRII	CCWGG	4 cut(s)	52, 285, 414, 604
EcoT14I	CCWWGG	2 cut(s)	876, 1079
EcoT38I	GRGCYC	2 cut(s)	206, 687
ErhI	CCWWGG	2 cut(s)	876, 1079
FauI	CCCGC	1 cut(s)	443
FblI	GTMKAC	1 cut(s)	406
Fnu4HI	GCNGC	4 cut(s)	105, 652, 873, 980
FokI	GGATG	4 cut(s)	206, 299, 587, 1102
FriOI	GRGCYC	2 cut(s)	206, 687
Fsp4HI	GCNGC	4 cut(s)	105, 652, 873, 980
FspBI	CTAG	2 cut(s)	158, 803
GluI	GCNGC	4 cut(s)	105, 652, 873, 980
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	651, 756
HapII	CCGG	1 cut(s)	95
HincII	GTYRAC	2 cut(s)	910, 952
HindII	GTYRAC	2 cut(s)	910, 952
HindIII	AAGCTT	1 cut(s)	355
HpaI	GTTAAC	1 cut(s)	952
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	3 cut(s)	392, 1018, 1068
Hpy166II	GTNNAC	5 cut(s)	407, 482, 813, 910, 952
Hpy188I	TCNGA	5 cut(s)	142, 462, 739, 1098, 1112
Hpy188III	TCNNGA	7 cut(s)	95, 166, 199, 274, 281, 392, 1151
Hpy8I	GTNNAC	5 cut(s)	407, 482, 813, 910, 952
HpyAV	CCTTC	3 cut(s)	330, 842, 1148
HpyCH4III	ACNGT	3 cut(s)	257, 479, 565
HpyCH4IV	ACGT	4 cut(s)	16, 409, 903, 988
HpyCH4V	TGCA	5 cut(s)	104, 231, 917, 1048, 1124
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 363, 753, 878
HpyF3I	CTNAG	9 cut(s)	67, 191, 488, 542, 575, 590, 641, 738, 854
HpySE526I	ACGT	4 cut(s)	16, 409, 903, 988
Kpn2I	TCCGGA	1 cut(s)	94
KspAI	GTTAAC	1 cut(s)	952
Kzo9I	GATC	4 cut(s)	142, 184, 499, 1073
LmnI	GCTCC	4 cut(s)	7, 314, 927, 1084
Lsp1109I	GCAGC	3 cut(s)	116, 884, 966
LweI	GCATC	2 cut(s)	1035, 1080
MaeI	CTAG	2 cut(s)	158, 803
MaeII	ACGT	4 cut(s)	16, 409, 903, 988
MaeIII	GTNAC	1 cut(s)	989
MalI	GATC	4 cut(s)	144, 186, 501, 1075
MbiI	CCGCTC	1 cut(s)	1087
MboI	GATC	4 cut(s)	142, 184, 499, 1073
MboII	GAAGA	4 cut(s)	194, 302, 618, 718
MfeI	CAATTG	1 cut(s)	299
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	3 cut(s)	89, 206, 687
MlyI	GAGTC	5 cut(s)	146, 279, 646, 1050, 1127
MmeI	TCCRAC	3 cut(s)	485, 590, 1090
MnlI	CCTC	7 cut(s)	198, 399, 746, 935, 941, 1018, 1151
MroI	TCCGGA	1 cut(s)	94
MroXI	GAANNNNTTC	2 cut(s)	622, 710
MseI	TTAA	2 cut(s)	560, 951
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	4 cut(s)	54, 287, 416, 606
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	3 cut(s)	10, 1034, 1126
MvaI	CCWGG	4 cut(s)	54, 287, 416, 606
MvnI	CGCG	1 cut(s)	999
MwoI	GCNNNNNNNGC	4 cut(s)	249, 363, 753, 878
NcoI	CCATGG	1 cut(s)	876
NdeII	GATC	4 cut(s)	142, 184, 499, 1073
NlaIV	GGNNCC	2 cut(s)	310, 598
NspI	RCATGY	3 cut(s)	93, 252, 841
PagI	TCATGA	1 cut(s)	198
PciI	ACATGT	2 cut(s)	89, 837
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PctI	GAATGC	3 cut(s)	10, 1034, 1126
PdmI	GAANNNNTTC	2 cut(s)	622, 710
PfeI	GAWTC	5 cut(s)	98, 211, 277, 331, 529
PflFI	GACNNNGTC	1 cut(s)	893
PflMI	CCANNNNNTGG	1 cut(s)	898
PkrI	GCNGC	4 cut(s)	106, 653, 874, 981
PleI	GAGTC	5 cut(s)	145, 278, 645, 1050, 1127
PpsI	GAGTC	5 cut(s)	145, 278, 645, 1050, 1127
Ppu21I	YACGTR	2 cut(s)	17, 410
PscI	ACATGT	2 cut(s)	89, 837
Psp124BI	GAGCTC	2 cut(s)	206, 687
Psp6I	CCWGG	4 cut(s)	52, 285, 414, 604
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	4 cut(s)	52, 285, 414, 604
PspN4I	GGNNCC	2 cut(s)	310, 598
PspPI	GGNCC	1 cut(s)	283
PstI	CTGCAG	2 cut(s)	106, 233
PsuI	RGATCY	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	893
RsaI	GTAC	5 cut(s)	19, 412, 481, 743, 1139
RsaNI	GTAC	5 cut(s)	18, 411, 480, 742, 1138
SacI	GAGCTC	2 cut(s)	206, 687
SaqAI	TTAA	2 cut(s)	560, 951
SatI	GCNGC	4 cut(s)	105, 652, 873, 980
Sau3AI	GATC	4 cut(s)	142, 184, 499, 1073
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	5 cut(s)	146, 279, 646, 1050, 1127
ScrFI	CCNGG	4 cut(s)	54, 287, 416, 606
SduI	GDGCHC	3 cut(s)	89, 206, 687
SfaNI	GCATC	2 cut(s)	1035, 1080
SfcI	CTRYAG	2 cut(s)	102, 229
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
SnaBI	TACGTA	1 cut(s)	410
SsiI	CCGC	4 cut(s)	450, 652, 999, 1087
SspMI	CTAG	2 cut(s)	158, 803
SstI	GAGCTC	2 cut(s)	206, 687
StyD4I	CCNGG	4 cut(s)	52, 285, 414, 604
StyI	CCWWGG	2 cut(s)	876, 1079
TaaI	ACNGT	3 cut(s)	257, 479, 565
TaiI	ACGT	4 cut(s)	19, 412, 906, 991
TaqI	TCGA	5 cut(s)	498, 527, 846, 927, 933
TatI	WGTACW	1 cut(s)	479
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	5 cut(s)	98, 211, 277, 331, 529
Tru1I	TTAA	2 cut(s)	560, 951
Tru9I	TTAA	2 cut(s)	560, 951
TscAI	CASTG	3 cut(s)	199, 482, 598
TseI	GCWGC	3 cut(s)	104, 872, 979
TspDTI	ATGAA	6 cut(s)	37, 365, 537, 618, 832, 1133
TspRI	CASTG	3 cut(s)	199, 482, 598
Tth111I	GACNNNGTC	1 cut(s)	893
Van91I	CCANNNNNTGG	1 cut(s)	898
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	4 cut(s)	44, 384, 456, 866
XceI	RCATGY	3 cut(s)	93, 252, 841
XmiI	GTMKAC	1 cut(s)	406
XmnI	GAANNNNTTC	2 cut(s)	622, 710
XspI	CTAG	2 cut(s)	158, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.