Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0008883

Physical Location & Seq

Genomic Coordinates Reverse (-)

25112746 .. 25114436

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1170300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGATGGAGCATTCACGTACTATTCGTCATTTGGTTTTGTTGAAATTCATGCCTGGCTTCTTTCTCTTAGTCTTATACATGATGAGCACATGTCAGGAATCTGCAGCATTTCCCAGCCCTACCCTGCTTGGAAACGAATCTGATCGCTTAGCTTTGCTAGACTTGAAGAAAAGAATAACTGAAGATCCCCTCAGTGTCATGAGCTCATGGAATCATTCCATCCACTTCTGCAATTGGGTAGGCATTACATGCCACCGTGCCACCCAAAGAATCTTGATTCTGGACCTGGGAGATAAACAATTGGTAGGCTCCATTCCACCTTCCATTGGGAATCTTACTCGTCTAATTGAAATAAGCTTGGGAAGCAACAAATTTCATGGTGAAATTCCTCAAAAACTGGGTCGTCTGCATGCCCTGGAAAGTCTCAACCTGTCTTCCAATTCTTTAGGCGGGAAAATTCCGACTAATATGTCCCACTGTACACAACTAAGAGTTTTTTATCTTAATTCCAATAAGATTATTGGGTCGATTCCACACCAACTCAGTTCGTGGTTGAGTTTAACTATAGGAAACTTTTCTTCTTTGAGGAGTCTTAGACTTGGCCGCAACAATGTTCAAGGAAGCATACCAAATGAGCTCGGGCATATAACAACCTTGAAGACATTCTCAGTTGGGCAGAATAATTTGTCTGGTATGCTCCCTTCTTCAATTTATAATATTTCTTCCATATACATTTTCAGTGTTACTGGAAACCAACTACATGGAGAGCTACTATCAAATCTCGGCATCTTGCTTCCTAATCTCGTAGAATTTTACTGTAGTATCAACAATTTCACAGGAAATATTCCTGTATCATTGTCAAATGTTTCCAGACTTCAGAGGATTGATTTTGGTGGAAATGATTTCACGGAGACTGTCCCTGGAGAAAGTCTCGGAAGCTTGCGAAGCTTAACTGTGCTAAACTTTATAGACAATCGACTGGGAAATGGAAAACTTGGTGATTTGAGTTTTCTCAATTTCTTGACTAATTGTACTAGTCTTCAACACCTGGGTCTTAGCTATAATCGTTTTGGGGGAGAAATCCCGAGATCCATATCCAACCTTTCGACCCAACTGCAAATTCTTTTTCTGGCGGGTAATTTGTTACATGGAAGCCTCCCAAACGGCATTGGAAATCTTATAAACCTTATCAATCTAGATGTAAGTGAAAACTATTTGGCGGGTGTTGTCCCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

413

Amino Acids

45.23

Weight (kDa)

8.53

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	46 - 84	1.5e-11	Leucine rich repeat N-terminal domain
LRR_8	PF13855	114 - 173	9.4e-06	Leucine rich repeat
LRR_14	PF23598	157 - 323	5e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008883)

Species	Orthologous Gene IDs
malus_domestica	MD03G1225100.v1.1 MD04G1149900.v1.1 MD04G1156300.v1.1 MD04G1157600.v1.1 MD04G1157800.v1.1 MD04G1158300.v1.1 MD04G1158700.v1.1 MD05G1075700.v1.1 MD07G1165000.v1.1 MD12G1130600.v1.1 MD12G1134600.v1.1 MD12G1134900.v1.1 MD12G1135400.v1.1 MD12G1136000.v1.1 MD12G1170300.v1.1 MD12G1170900.v1.1 MD13G1275400.v1.1
pyrus_communis	pycom12g10490 pycom12g12990 pycom12g13010 pycom12g16250
rosa_chinensis	RchiOBHm_Chr1g0356231
rosa_rugosa	Rorug03G0064300.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	714, 1181
AasI	GACNNNNNNGTC	1 cut(s)	469
AciI	CCGC	4 cut(s)	450, 604, 1133, 1220
AclWI	GGATC	2 cut(s)	179, 1083
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	6 cut(s)	44, 371, 384, 456, 809, 1119
AcuI	CTGAAG	2 cut(s)	201, 860
AfaI	GTAC	3 cut(s)	19, 481, 1033
AfiI	CCNNNNNNNGG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	89
AgsI	TTSAA	7 cut(s)	43, 166, 350, 617, 658, 708, 1043
AhlI	ACTAGT	1 cut(s)	1034
AjnI	CCWGG	5 cut(s)	52, 285, 414, 919, 1047
AjuI	GAANNNNNNNTTGG	2 cut(s)	1104, 1136
AluBI	AGCT	8 cut(s)	152, 204, 357, 637, 769, 939, 948, 1059
AluI	AGCT	8 cut(s)	152, 204, 357, 637, 769, 939, 948, 1059
Alw21I	GWGCWC	3 cut(s)	89, 206, 639
Alw26I	GTCTC	3 cut(s)	428, 905, 935
AlwI	GGATC	2 cut(s)	179, 1083
Ama87I	CYCGRG	2 cut(s)	638, 1084
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	6 cut(s)	44, 371, 384, 456, 809, 1119
ArsI	GACNNNNNNTTYG	2 cut(s)	385, 417
Asp700I	GAANNNNTTC	2 cut(s)	574, 662
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	392, 1010
AvaI	CYCGRG	2 cut(s)	638, 1084
AvaII	GGWCC	1 cut(s)	283
BaeI	ACNNNNGTAYC	2 cut(s)	805, 838
BanII	GRGCYC	2 cut(s)	206, 639
BarI	GAAGNNNNNNTAC	2 cut(s)	685, 717
BbsI	GAAGAC	3 cut(s)	426, 665, 1031
Bbv12I	GWGCWC	3 cut(s)	89, 206, 639
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	1180
BcgI	CGANNNNNNTGC	2 cut(s)	1096, 1130
BciT130I	CCWGG	5 cut(s)	54, 287, 416, 921, 1049
BcoDI	GTCTC	3 cut(s)	428, 905, 935
BcuI	ACTAGT	1 cut(s)	1034
BfaI	CTAG	3 cut(s)	158, 1035, 1196
BfmI	CTRYAG	3 cut(s)	102, 564, 817
BisI	GCNGC	2 cut(s)	105, 604
BlpI	GCTNAGC	1 cut(s)	148
BlsI	GCNGC	2 cut(s)	106, 605
Bme1390I	CCNGG	5 cut(s)	54, 287, 416, 921, 1049
Bme18I	GGWCC	1 cut(s)	283
BmeT110I	CYCGRG	2 cut(s)	638, 1084
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	5 cut(s)	54, 287, 416, 921, 1049
BmrI	ACTGGG	2 cut(s)	407, 989
BmsI	GCATC	1 cut(s)	795
BmuI	ACTGGG	2 cut(s)	407, 989
BpiI	GAAGAC	3 cut(s)	426, 665, 1031
BplI	GAGNNNNNCTC	2 cut(s)	915, 947
BpmI	CTGGAG	1 cut(s)	942
Bpu1102I	GCTNAGC	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	1093
BsaJI	CCNNGG	4 cut(s)	286, 414, 919, 1048
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	3 cut(s)	402, 751, 984
Bse8I	GATNNNNATC	1 cut(s)	1093
BseBI	CCWGG	5 cut(s)	54, 287, 416, 921, 1049
BseDI	CCNNGG	4 cut(s)	286, 414, 919, 1048
BseGI	GGATG	1 cut(s)	219
BseJI	GATNNNNATC	1 cut(s)	1093
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	3 cut(s)	205, 556, 681
BseNI	ACTGG	3 cut(s)	402, 751, 984
BseRI	GAGGAG	1 cut(s)	601
BseXI	GCAGC	1 cut(s)	116
BseYI	CCCAGC	1 cut(s)	113
BshFI	GGCC	1 cut(s)	603
BsiHKAI	GWGCWC	3 cut(s)	89, 206, 639
BsiHKCI	CYCGRG	2 cut(s)	638, 1084
BslFI	GGGAC	3 cut(s)	457, 902, 1214
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	3 cut(s)	428, 905, 935
BsmFI	GGGAC	3 cut(s)	457, 902, 1214
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	603
BsoBI	CYCGRG	2 cut(s)	638, 1084
Bsp1286I	GDGCHC	3 cut(s)	89, 206, 639
Bsp1407I	TGTACA	1 cut(s)	479
Bsp143I	GATC	3 cut(s)	142, 184, 1088
Bsp1720I	GCTNAGC	1 cut(s)	148
BspACI	CCGC	4 cut(s)	450, 604, 1133, 1220
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	3 cut(s)	204, 555, 680
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	106
BspPI	GGATC	2 cut(s)	179, 1083
BsrGI	TGTACA	1 cut(s)	479
BsrI	ACTGG	3 cut(s)	402, 751, 984
BssECI	CCNNGG	4 cut(s)	286, 414, 919, 1048
BssMI	GATC	3 cut(s)	142, 184, 1088
Bst2UI	CCWGG	5 cut(s)	54, 287, 416, 921, 1049
Bst4CI	ACNGT	5 cut(s)	257, 479, 818, 916, 955
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstAUI	TGTACA	1 cut(s)	479
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	411, 941
BstDEI	CTNAG	8 cut(s)	67, 148, 191, 488, 542, 593, 667, 1055
BstF5I	GGATG	1 cut(s)	219
BstKTI	GATC	3 cut(s)	145, 187, 1091
BstMAI	GTCTC	3 cut(s)	428, 905, 935
BstMBI	GATC	3 cut(s)	142, 184, 1088
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 363, 945
BstNI	CCWGG	5 cut(s)	54, 287, 416, 921, 1049
BstNSI	RCATGY	3 cut(s)	93, 252, 413
BstSCI	CCNGG	5 cut(s)	52, 285, 414, 919, 1047
BstSFI	CTRYAG	3 cut(s)	102, 564, 817
BstV1I	GCAGC	1 cut(s)	116
BstV2I	GAAGAC	3 cut(s)	426, 665, 1031
BstX2I	RGATCY	2 cut(s)	184, 1088
BstXI	CCANNNNNNTGG	1 cut(s)	761
BstYI	RGATCY	2 cut(s)	184, 1088
BsuRI	GGCC	1 cut(s)	603
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	3 cut(s)	199, 475, 745
Cac8I	GCNNGC	2 cut(s)	411, 941
CciI	TCATGA	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	3 cut(s)	18, 480, 1032
CviQI	GTAC	3 cut(s)	18, 480, 1032
DdeI	CTNAG	8 cut(s)	67, 148, 191, 488, 542, 593, 667, 1055
DpnI	GATC	3 cut(s)	144, 186, 1090
DpnII	GATC	3 cut(s)	142, 184, 1088
DrdI	GACNNNNNNGTC	1 cut(s)	469
DseDI	GACNNNNNNGTC	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	601
Ecl136II	GAGCTC	2 cut(s)	204, 637
Eco24I	GRGCYC	2 cut(s)	206, 639
Eco47I	GGWCC	1 cut(s)	283
Eco53kI	GAGCTC	2 cut(s)	204, 637
Eco57I	CTGAAG	2 cut(s)	201, 860
Eco88I	CYCGRG	2 cut(s)	638, 1084
EcoICRI	GAGCTC	2 cut(s)	204, 637
EcoRII	CCWGG	5 cut(s)	52, 285, 414, 919, 1047
EcoT38I	GRGCYC	2 cut(s)	206, 639
FaqI	GGGAC	3 cut(s)	457, 902, 1214
FauI	CCCGC	3 cut(s)	443, 1126, 1213
Fnu4HI	GCNGC	2 cut(s)	105, 604
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	2 cut(s)	206, 639
Fsp4HI	GCNGC	2 cut(s)	105, 604
FspBI	CTAG	3 cut(s)	158, 1035, 1196
GluI	GCNGC	2 cut(s)	105, 604
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	942
HaeIII	GGCC	1 cut(s)	603
HindIII	AAGCTT	3 cut(s)	355, 937, 946
HinfI	GANTC	8 cut(s)	98, 137, 211, 270, 277, 331, 529, 589
HphI	GGTGA	2 cut(s)	392, 1010
Hpy166II	GTNNAC	1 cut(s)	482
Hpy188I	TCNGA	4 cut(s)	142, 462, 879, 935
Hpy188III	TCNNGA	8 cut(s)	95, 199, 274, 281, 870, 1021, 1084, 1196
Hpy8I	GTNNAC	1 cut(s)	482
HpyAV	CCTTC	2 cut(s)	330, 711
HpyCH4III	ACNGT	5 cut(s)	257, 479, 818, 916, 955
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	4 cut(s)	104, 231, 409, 1117
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 363, 945
HpyF3I	CTNAG	8 cut(s)	67, 148, 191, 488, 542, 593, 667, 1055
HpySE526I	ACGT	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	142, 184, 1088
LmnI	GCTCC	3 cut(s)	7, 314, 702
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	1 cut(s)	795
MaeI	CTAG	3 cut(s)	158, 1035, 1196
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	742, 1143
MalI	GATC	3 cut(s)	144, 186, 1090
MboI	GATC	3 cut(s)	142, 184, 1088
MboII	GAAGA	8 cut(s)	178, 194, 426, 570, 670, 696, 714, 1031
MfeI	CAATTG	2 cut(s)	232, 299
MflI	RGATCY	2 cut(s)	184, 1088
MhlI	GDGCHC	3 cut(s)	89, 206, 639
MlyI	GAGTC	1 cut(s)	598
MmeI	TCCRAC	2 cut(s)	485, 1122
MnlI	CCTC	5 cut(s)	200, 399, 579, 873, 1166
MroXI	GAANNNNTTC	2 cut(s)	574, 662
MseI	TTAA	3 cut(s)	504, 560, 950
MspR9I	CCNGG	5 cut(s)	54, 287, 416, 921, 1049
MunI	CAATTG	2 cut(s)	232, 299
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	5 cut(s)	54, 287, 416, 921, 1049
MwoI	GCNNNNNNNGC	3 cut(s)	249, 363, 945
NdeII	GATC	3 cut(s)	142, 184, 1088
NlaIV	GGNNCC	1 cut(s)	310
NmeAIII	GCCGAG	1 cut(s)	762
NspI	RCATGY	3 cut(s)	93, 252, 413
PaeI	GCATGC	1 cut(s)	413
PagI	TCATGA	1 cut(s)	198
PciI	ACATGT	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	2 cut(s)	574, 662
PfeI	GAWTC	7 cut(s)	98, 137, 211, 270, 277, 331, 529
PkrI	GCNGC	2 cut(s)	106, 605
PleI	GAGTC	1 cut(s)	597
PpsI	GAGTC	1 cut(s)	597
Ppu21I	YACGTR	1 cut(s)	17
PscI	ACATGT	1 cut(s)	89
PsiI	TTATAA	2 cut(s)	714, 1181
Psp124BI	GAGCTC	2 cut(s)	206, 639
Psp6I	CCWGG	5 cut(s)	52, 285, 414, 919, 1047
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	5 cut(s)	52, 285, 414, 919, 1047
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	106
PsuI	RGATCY	2 cut(s)	184, 1088
RsaI	GTAC	3 cut(s)	19, 481, 1033
RsaNI	GTAC	3 cut(s)	18, 480, 1032
SacI	GAGCTC	2 cut(s)	206, 639
SaqAI	TTAA	3 cut(s)	504, 560, 950
SatI	GCNGC	2 cut(s)	105, 604
Sau3AI	GATC	3 cut(s)	142, 184, 1088
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	598
ScrFI	CCNGG	5 cut(s)	54, 287, 416, 921, 1049
SduI	GDGCHC	3 cut(s)	89, 206, 639
SfaNI	GCATC	1 cut(s)	795
SfcI	CTRYAG	3 cut(s)	102, 564, 817
SinI	GGWCC	1 cut(s)	283
SpeI	ACTAGT	1 cut(s)	1034
SphI	GCATGC	1 cut(s)	413
SsiI	CCGC	4 cut(s)	450, 604, 1133, 1220
SspI	AATATT	2 cut(s)	718, 844
SspMI	CTAG	3 cut(s)	158, 1035, 1196
SstI	GAGCTC	2 cut(s)	206, 639
StyD4I	CCNGG	5 cut(s)	52, 285, 414, 919, 1047
TaaI	ACNGT	5 cut(s)	257, 479, 818, 916, 955
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	3 cut(s)	527, 976, 1106
TatI	WGTACW	2 cut(s)	479, 1031
TauI	GCSGC	1 cut(s)	606
TfiI	GAWTC	7 cut(s)	98, 137, 211, 270, 277, 331, 529
Tru1I	TTAA	3 cut(s)	504, 560, 950
Tru9I	TTAA	3 cut(s)	504, 560, 950
TscAI	CASTG	3 cut(s)	199, 482, 745
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	37, 365
TspGWI	ACGGA	1 cut(s)	923
TspRI	CASTG	3 cut(s)	199, 482, 745
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	6 cut(s)	44, 371, 384, 456, 809, 1119
XbaI	TCTAGA	1 cut(s)	1195
XceI	RCATGY	3 cut(s)	93, 252, 413
XmnI	GAANNNNTTC	2 cut(s)	574, 662
XspI	CTAG	3 cut(s)	158, 1035, 1196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.