Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008883

Physical Location & Seq

Genomic Coordinates Forward (+)

12540905 .. 12541972

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGATGGAGCATTCACTTACTATTCCTAATCTGGTTTTGTTGAAATTCCTGCATGGCTTCTTTCTCTTAGTCTTATGCATTATGAGCACATGTCCGGAATCTGCAGCATTTCCCAGCTCTACCCTACTTGGAAACGAATCTGATCGCTTGGCTTTGCTAGACTTCAAGAAAAGAGTAACTGAAGATCCCCTCAGTGTCATGAGCTTGTGGAATCATTCCATCCACTTCTGCAGCTGGGTAGGCATTACATGCCACCGTGCCACCCAAAGAGTCTTGATTCTGGACCTGCAAGATAAACAATTGGTAGGCTCCATTCCACCTTCCATTGGGAATCTTACTCGTCTAATTCAAATAAACTTGGGAATCAACAAGTTTCATGGTGAAATTCCTCAAGAATTGGGTCGACTGCGGACCTTGGAAAGTCTCAACCTGTCTTTCAATTCTTTCGGCGGGAAACTTCCGACTAATATGTCCCACTGTACACAACTCAGATTTTTGGATCTTTTATCCAATAAGATTATTGGGTCAATTCCACGCCAACTCAGTTCATGGTTGAGTTTGACTGTTCTACAACTTGGAAAAAATAATCTCAGTGGAACCATCCCAGGTTGGATAGGAAATTTTTCTTCTTTGAGGAGTCTTAGACTTGGCGGCAACAATTTTCAAGGAAGCATACCAAATGAGCTCGGGCATATAACAACCTTGGAATTATTCATAGTTGGGGACAATAATTTGTCTGGTATGCTCCATTCTTCAATTTATAATATTTCTTCCATATACATATTCGGTGTTGTTATGAACCAATTCCATGGAGAGCTACCACCAAATCTCGGCATCCTGCTTCCTAATCTCGAAAATTTTTACTGTGGTGGCAACAATTTCACAGGAAATATTCCTGTATCATTGTCAAATGCTTCTAGACTTCAGCTGATTGATTTTTCTACAAATGACTTCACGGGGACAGTCCCTGGAGAAAGTCTCGGAAGCTTGCGAAGCTTATTTAGACTAAACTTTGCAGACAATCGACTAGGAAATGGAAAACTTGGTGAGAAATCCCGAGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

356

Amino Acids

39.12

Weight (kDa)

8.24

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	46 - 84	1e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	151 - 338	3.9e-06	Leucine-rich repeat region
LRR_8	PF13855	162 - 221	9.2e-07	Leucine rich repeat
LRR_8	PF13855	186 - 245	7.9e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008883)

Species	Orthologous Gene IDs
malus_domestica	MD03G1225100.v1.1 MD04G1149900.v1.1 MD04G1156300.v1.1 MD04G1157600.v1.1 MD04G1157800.v1.1 MD04G1158300.v1.1 MD04G1158700.v1.1 MD05G1075700.v1.1 MD07G1165000.v1.1 MD12G1130600.v1.1 MD12G1134600.v1.1 MD12G1134900.v1.1 MD12G1135400.v1.1 MD12G1136000.v1.1 MD12G1170300.v1.1 MD12G1170900.v1.1 MD13G1275400.v1.1
pyrus_communis	pycom12g10490 pycom12g12990 pycom12g13010 pycom12g16250
rosa_chinensis	RchiOBHm_Chr1g0356231
rosa_rugosa	Rorug03G0064300.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AasI	GACNNNNNNGTC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	403
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	3 cut(s)	409, 450, 651
AclWI	GGATC	3 cut(s)	179, 507, 1055
AcsI	RAATTY	4 cut(s)	44, 384, 619, 856
AcuI	CTGAAG	2 cut(s)	201, 908
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	2 cut(s)	326, 830
AflIII	ACRYGT	1 cut(s)	89
AgsI	TTSAA	6 cut(s)	43, 166, 350, 439, 665, 756
AjnI	CCWGG	2 cut(s)	604, 967
AluBI	AGCT	8 cut(s)	117, 204, 234, 685, 817, 928, 987, 996
AluI	AGCT	8 cut(s)	117, 204, 234, 685, 817, 928, 987, 996
Alw21I	GWGCWC	2 cut(s)	89, 687
Alw26I	GTCTC	2 cut(s)	428, 983
AlwI	GGATC	3 cut(s)	179, 507, 1055
AlwNI	CAGNNNCTG	1 cut(s)	968
Ama87I	CYCGRG	2 cut(s)	686, 1056
Aor13HI	TCCGGA	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	104, 231
ApoI	RAATTY	4 cut(s)	44, 384, 619, 856
Asp700I	GAANNNNTTC	2 cut(s)	622, 803
AspS9I	GGNCC	2 cut(s)	283, 411
AsuHPI	GGTGA	2 cut(s)	392, 1058
AvaI	CYCGRG	2 cut(s)	686, 1056
AvaII	GGWCC	2 cut(s)	283, 411
BanII	GRGCYC	1 cut(s)	687
Bbv12I	GWGCWC	2 cut(s)	89, 687
BbvI	GCAGC	2 cut(s)	116, 243
BccI	CCATC	2 cut(s)	227, 608
BciT130I	CCWGG	2 cut(s)	606, 969
BcoDI	GTCTC	2 cut(s)	428, 983
BfaI	CTAG	3 cut(s)	158, 918, 1028
BfmI	CTRYAG	2 cut(s)	102, 229
BfuAI	ACCTGC	1 cut(s)	294
BisI	GCNGC	3 cut(s)	105, 232, 652
BlsI	GCNGC	3 cut(s)	106, 233, 653
Bme1390I	CCNGG	2 cut(s)	606, 969
Bme18I	GGWCC	2 cut(s)	283, 411
BmeT110I	CYCGRG	2 cut(s)	686, 1056
BmgT120I	GGNCC	2 cut(s)	283, 411
BmiI	GGNNCC	2 cut(s)	310, 598
BmrFI	CCNGG	2 cut(s)	606, 969
BmsI	GCATC	1 cut(s)	843
BplI	GAGNNNNNCTC	2 cut(s)	963, 995
BpmI	CTGGAG	1 cut(s)	990
BpuEI	CTTGAG	1 cut(s)	375
BsaJI	CCNNGG	5 cut(s)	414, 604, 702, 808, 967
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 830
BseAI	TCCGGA	1 cut(s)	94
BseBI	CCWGG	2 cut(s)	606, 969
BseDI	CCNNGG	5 cut(s)	414, 604, 702, 808, 967
BseGI	GGATG	3 cut(s)	219, 600, 834
BseLI	CCNNNNNNNGG	2 cut(s)	326, 830
BseMII	CTCAG	4 cut(s)	205, 502, 556, 604
BseRI	GAGGAG	1 cut(s)	649
BseXI	GCAGC	2 cut(s)	116, 243
BseYI	CCCAGC	2 cut(s)	113, 234
BsiHKAI	GWGCWC	2 cut(s)	89, 687
BsiHKCI	CYCGRG	2 cut(s)	686, 1056
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	4 cut(s)	457, 737, 950, 973
BslI	CCNNNNNNNGG	2 cut(s)	326, 830
BsmAI	GTCTC	2 cut(s)	428, 983
BsmFI	GGGAC	4 cut(s)	457, 737, 950, 973
BsmI	GAATGC	1 cut(s)	10
BsoBI	CYCGRG	2 cut(s)	686, 1056
Bsp1286I	GDGCHC	2 cut(s)	89, 687
Bsp13I	TCCGGA	1 cut(s)	94
Bsp1407I	TGTACA	1 cut(s)	479
Bsp143I	GATC	4 cut(s)	142, 184, 499, 1060
Bsp19I	CCATGG	1 cut(s)	808
BspACI	CCGC	3 cut(s)	409, 450, 651
BspCNI	CTCAG	4 cut(s)	204, 501, 555, 603
BspEI	TCCGGA	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	310, 598
BspMAI	CTGCAG	2 cut(s)	106, 233
BspMI	ACCTGC	1 cut(s)	294
BspPI	GGATC	3 cut(s)	179, 507, 1055
BsrGI	TGTACA	1 cut(s)	479
BssECI	CCNNGG	5 cut(s)	414, 604, 702, 808, 967
BssMI	GATC	4 cut(s)	142, 184, 499, 1060
BssT1I	CCWWGG	3 cut(s)	414, 702, 808
Bst2UI	CCWGG	2 cut(s)	606, 969
Bst4CI	ACNGT	5 cut(s)	257, 479, 565, 866, 964
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstAUI	TGTACA	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	989
BstDEI	CTNAG	6 cut(s)	67, 191, 488, 542, 590, 641
BstDSI	CCRYGG	1 cut(s)	808
BstF5I	GGATG	3 cut(s)	219, 600, 834
BstKTI	GATC	4 cut(s)	145, 187, 502, 1063
BstMAI	GTCTC	2 cut(s)	428, 983
BstMBI	GATC	4 cut(s)	142, 184, 499, 1060
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 240, 249, 993
BstNI	CCWGG	2 cut(s)	606, 969
BstNSI	RCATGY	2 cut(s)	93, 252
BstSCI	CCNGG	2 cut(s)	604, 967
BstSFI	CTRYAG	2 cut(s)	102, 229
BstV1I	GCAGC	2 cut(s)	116, 243
BstX2I	RGATCY	3 cut(s)	184, 499, 1060
BstXI	CCANNNNNNTGG	1 cut(s)	809
BstYI	RGATCY	3 cut(s)	184, 499, 1060
BtgI	CCRYGG	1 cut(s)	808
BtsCI	GGATG	3 cut(s)	219, 600, 834
BtsIMutI	CAGTG	3 cut(s)	199, 475, 598
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	989
CaiI	CAGNNNCTG	1 cut(s)	968
CciI	TCATGA	1 cut(s)	198
Cfr13I	GGNCC	2 cut(s)	283, 411
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	7 cut(s)	53, 90, 199, 249, 377, 549, 809
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	6 cut(s)	67, 191, 488, 542, 590, 641
DpnI	GATC	4 cut(s)	144, 186, 501, 1062
DpnII	GATC	4 cut(s)	142, 184, 499, 1060
DrdI	GACNNNNNNGTC	1 cut(s)	469
DseDI	GACNNNNNNGTC	1 cut(s)	469
Ecl136II	GAGCTC	1 cut(s)	685
Eco130I	CCWWGG	3 cut(s)	414, 702, 808
Eco24I	GRGCYC	1 cut(s)	687
Eco47I	GGWCC	2 cut(s)	283, 411
Eco53kI	GAGCTC	1 cut(s)	685
Eco57I	CTGAAG	2 cut(s)	201, 908
Eco88I	CYCGRG	2 cut(s)	686, 1056
EcoICRI	GAGCTC	1 cut(s)	685
EcoRII	CCWGG	2 cut(s)	604, 967
EcoT14I	CCWWGG	3 cut(s)	414, 702, 808
EcoT22I	ATGCAT	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	3 cut(s)	414, 702, 808
FaeI	CATG	7 cut(s)	56, 93, 202, 252, 380, 552, 812
FaqI	GGGAC	4 cut(s)	457, 737, 950, 973
FatI	CATG	7 cut(s)	52, 89, 198, 248, 376, 548, 808
FauI	CCCGC	1 cut(s)	443
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	105, 232, 652
FokI	GGATG	3 cut(s)	206, 587, 821
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	3 cut(s)	105, 232, 652
FspBI	CTAG	3 cut(s)	158, 918, 1028
GluI	GCNGC	3 cut(s)	105, 232, 652
GsaI	CCCAGC	2 cut(s)	117, 238
GsuI	CTGGAG	1 cut(s)	990
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	7 cut(s)	56, 93, 202, 252, 380, 552, 812
HincII	GTYRAC	1 cut(s)	404
HindII	GTYRAC	1 cut(s)	404
HindIII	AAGCTT	2 cut(s)	985, 994
HinfI	GANTC	8 cut(s)	98, 137, 211, 270, 277, 331, 363, 637
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	392, 1058
Hpy166II	GTNNAC	2 cut(s)	404, 482
Hpy188I	TCNGA	4 cut(s)	142, 462, 491, 983
Hpy188III	TCNNGA	9 cut(s)	95, 166, 199, 274, 281, 392, 851, 918, 1056
Hpy8I	GTNNAC	2 cut(s)	404, 482
HpyAV	CCTTC	1 cut(s)	330
HpyCH4III	ACNGT	5 cut(s)	257, 479, 565, 866, 964
HpyCH4V	TGCA	6 cut(s)	52, 78, 104, 231, 289, 1016
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 240, 249, 993
HpyF3I	CTNAG	6 cut(s)	67, 191, 488, 542, 590, 641
Hsp92II	CATG	7 cut(s)	56, 93, 202, 252, 380, 552, 812
Kpn2I	TCCGGA	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	142, 184, 499, 1060
LmnI	GCTCC	3 cut(s)	7, 314, 750
Lsp1109I	GCAGC	2 cut(s)	116, 243
LweI	GCATC	1 cut(s)	843
MaeI	CTAG	3 cut(s)	158, 918, 1028
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	4 cut(s)	144, 186, 501, 1062
MboI	GATC	4 cut(s)	142, 184, 499, 1060
MboII	GAAGA	4 cut(s)	194, 618, 744, 762
MfeI	CAATTG	1 cut(s)	299
MflI	RGATCY	3 cut(s)	184, 499, 1060
MhlI	GDGCHC	2 cut(s)	89, 687
MlyI	GAGTC	2 cut(s)	279, 646
MmeI	TCCRAC	2 cut(s)	485, 590
MnlI	CCTC	3 cut(s)	200, 399, 627
Mph1103I	ATGCAT	1 cut(s)	80
MroI	TCCGGA	1 cut(s)	94
MroXI	GAANNNNTTC	2 cut(s)	622, 803
MspA1I	CMGCKG	2 cut(s)	234, 928
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	606, 969
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	606, 969
MwoI	GCNNNNNNNGC	4 cut(s)	84, 240, 249, 993
NcoI	CCATGG	1 cut(s)	808
NdeII	GATC	4 cut(s)	142, 184, 499, 1060
NlaIII	CATG	7 cut(s)	56, 93, 202, 252, 380, 552, 812
NlaIV	GGNNCC	2 cut(s)	310, 598
NmeAIII	GCCGAG	1 cut(s)	810
NsiI	ATGCAT	1 cut(s)	80
NspI	RCATGY	2 cut(s)	93, 252
PagI	TCATGA	1 cut(s)	198
PciI	ACATGT	1 cut(s)	89
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	2 cut(s)	622, 803
PfeI	GAWTC	6 cut(s)	98, 137, 211, 277, 331, 363
PkrI	GCNGC	3 cut(s)	106, 233, 653
PleI	GAGTC	2 cut(s)	278, 645
PpsI	GAGTC	2 cut(s)	278, 645
PscI	ACATGT	1 cut(s)	89
PsiI	TTATAA	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	687
Psp6I	CCWGG	2 cut(s)	604, 967
PspFI	CCCAGC	2 cut(s)	113, 234
PspGI	CCWGG	2 cut(s)	604, 967
PspN4I	GGNNCC	2 cut(s)	310, 598
PspPI	GGNCC	2 cut(s)	283, 411
PstI	CTGCAG	2 cut(s)	106, 233
PstNI	CAGNNNCTG	1 cut(s)	968
PsuI	RGATCY	3 cut(s)	184, 499, 1060
PvuII	CAGCTG	2 cut(s)	234, 928
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
SacI	GAGCTC	1 cut(s)	687
SalI	GTCGAC	1 cut(s)	402
SatI	GCNGC	3 cut(s)	105, 232, 652
Sau3AI	GATC	4 cut(s)	142, 184, 499, 1060
Sau96I	GGNCC	2 cut(s)	283, 411
SchI	GAGTC	2 cut(s)	279, 646
ScrFI	CCNGG	2 cut(s)	606, 969
SduI	GDGCHC	2 cut(s)	89, 687
SfaNI	GCATC	1 cut(s)	843
SfcI	CTRYAG	2 cut(s)	102, 229
SinI	GGWCC	2 cut(s)	283, 411
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
SsiI	CCGC	3 cut(s)	409, 450, 651
SspI	AATATT	2 cut(s)	766, 892
SspMI	CTAG	3 cut(s)	158, 918, 1028
SstI	GAGCTC	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	604, 967
StyI	CCWWGG	3 cut(s)	414, 702, 808
TaaI	ACNGT	5 cut(s)	257, 479, 565, 866, 964
TaqI	TCGA	3 cut(s)	403, 852, 1024
TatI	WGTACW	1 cut(s)	479
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	6 cut(s)	98, 137, 211, 277, 331, 363
TscAI	CASTG	3 cut(s)	199, 482, 598
TseI	GCWGC	2 cut(s)	104, 231
TspDTI	ATGAA	4 cut(s)	365, 537, 703, 812
TspRI	CASTG	3 cut(s)	199, 482, 598
VpaK11BI	GGWCC	2 cut(s)	283, 411
XapI	RAATTY	4 cut(s)	44, 384, 619, 856
XbaI	TCTAGA	1 cut(s)	917
XceI	RCATGY	2 cut(s)	93, 252
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	2 cut(s)	622, 803
XspI	CTAG	3 cut(s)	158, 918, 1028
Zsp2I	ATGCAT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.