Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008883

Physical Location & Seq

Genomic Coordinates Reverse (-)

16225993 .. 16226490

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1075700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGCTCATGCAATCATTCCATTGGTTTCTGCAGTTGGGTACCGGTTTTGTGCCACGGTTCCAACAAAAGAGTCATGATTCTGAACCTGAAAACTAAAAATTTGGTAGGCTCCATTCCACCTTCCATTGAAAATCTTACTTATCTTATTGGACTCAACTTGAAAAACAACAGATTTTACGGTGAAATTCCCCAAGAAATGGGTTGTCTACGAAGCCTGCAACATCTCAACCTGTCTTACAATTCTTTCGCCAGGAAAGTTCCAACTGATATAAGCCACTATACATCACTAAAATTCCTCGATCTTGTTTCAAATAAAATTATAGGATCGATTCCAAACCAACTCTGTTCATTGTTGAGTATAATTAATCTATGGCTTAATGATAGCCATCTTAGCGGAATCATCCCAGGTTGGATAGGAAACTTTTCCTCTTTGAATAGTCTTTATCTTGGCATCAACAACTTGCAAGGAAGCTACCCAATGAGCTCAGGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

166

Amino Acids

18.27

Weight (kDa)

9.06

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	24 - 82	8.2e-06	Leucine rich repeat
LRR_14	PF23598	66 - 150	6.2e-07	Leucine-rich repeat region
LRR_8	PF13855	70 - 107	3.3e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008883)

Species	Orthologous Gene IDs
malus_domestica	MD03G1225100.v1.1 MD04G1149900.v1.1 MD04G1156300.v1.1 MD04G1157600.v1.1 MD04G1157800.v1.1 MD04G1158300.v1.1 MD04G1158700.v1.1 MD05G1075700.v1.1 MD07G1165000.v1.1 MD12G1130600.v1.1 MD12G1134600.v1.1 MD12G1134900.v1.1 MD12G1135400.v1.1 MD12G1136000.v1.1 MD12G1170300.v1.1 MD12G1170900.v1.1 MD13G1275400.v1.1
pyrus_communis	pycom12g10490 pycom12g12990 pycom12g13010 pycom12g16250
rosa_chinensis	RchiOBHm_Chr1g0356231
rosa_rugosa	Rorug03G0064300.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	40
AccB1I	GGYRCC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	199
AccI	GTMKAC	1 cut(s)	208
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	1 cut(s)	334
AcsI	RAATTY	3 cut(s)	100, 186, 293
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgeI	ACCGGT	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	131, 163, 312, 436
AjnI	CCWGG	2 cut(s)	251, 406
AluBI	AGCT	3 cut(s)	6, 474, 486
AluI	AGCT	3 cut(s)	6, 474, 486
Alw21I	GWGCWC	2 cut(s)	8, 488
AlwI	GGATC	1 cut(s)	334
ApoI	RAATTY	3 cut(s)	100, 186, 293
AseI	ATTAAT	1 cut(s)	366
AsiGI	ACCGGT	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	424
Asp718I	GGTACC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	40
BanII	GRGCYC	2 cut(s)	8, 488
Bbv12I	GWGCWC	2 cut(s)	8, 488
BccI	CCATC	1 cut(s)	396
BciT130I	CCWGG	2 cut(s)	253, 408
BfmI	CTRYAG	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	253, 408
BmiI	GGNNCC	3 cut(s)	42, 61, 112
BmrFI	CCNGG	2 cut(s)	253, 408
BmsI	GCATC	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	487
Bsa29I	ATCGAT	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	55, 406
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	387
BseBI	CCWGG	2 cut(s)	253, 408
BseCI	ATCGAT	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	55, 406
BseGI	GGATG	1 cut(s)	402
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	199
BshNI	GGYRCC	1 cut(s)	40
BshTI	ACCGGT	1 cut(s)	43
BshVI	ATCGAT	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	8, 488
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	8, 488
Bsp143I	GATC	2 cut(s)	301, 326
BspACI	CCGC	1 cut(s)	396
BspDI	ATCGAT	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	42, 61, 112
BspMAI	CTGCAG	1 cut(s)	35
BspPI	GGATC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	55, 406
BssMI	GATC	2 cut(s)	301, 326
Bst2UI	CCWGG	2 cut(s)	253, 408
Bst4CI	ACNGT	2 cut(s)	59, 182
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	2 cut(s)	392, 487
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	402
BstKTI	GATC	2 cut(s)	304, 329
BstMBI	GATC	2 cut(s)	301, 326
BstMWI	GCNNNNNNNGC	1 cut(s)	393
BstNI	CCWGG	2 cut(s)	253, 408
BstSCI	CCNGG	2 cut(s)	251, 406
BstSFI	CTRYAG	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	329
BsuTUI	ATCGAT	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	218
CciI	TCATGA	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	43
ClaI	ATCGAT	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	41
CspAI	ACCGGT	1 cut(s)	43
CviAII	CATG	2 cut(s)	9, 76
CviJI	RGCY	8 cut(s)	6, 111, 216, 276, 376, 387, 474, 486
CviKI_1	RGCY	8 cut(s)	6, 111, 216, 276, 376, 387, 474, 486
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	392, 487
DpnI	GATC	2 cut(s)	303, 328
DpnII	GATC	2 cut(s)	301, 326
Ecl136II	GAGCTC	2 cut(s)	6, 486
Eco24I	GRGCYC	2 cut(s)	8, 488
Eco53kI	GAGCTC	2 cut(s)	6, 486
EcoICRI	GAGCTC	2 cut(s)	6, 486
EcoRII	CCWGG	2 cut(s)	251, 406
EcoT38I	GRGCYC	2 cut(s)	8, 488
FaeI	CATG	2 cut(s)	12, 79
FaiI	YATR	7 cut(s)	10, 77, 272, 282, 323, 362, 373
FatI	CATG	2 cut(s)	8, 75
FblI	GTMKAC	1 cut(s)	208
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	2 cut(s)	8, 488
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	2 cut(s)	12, 79
HinfI	GANTC	5 cut(s)	72, 79, 153, 331, 399
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	2 cut(s)	59, 182
HpyCH4V	TGCA	4 cut(s)	12, 33, 220, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	393
HpyF3I	CTNAG	2 cut(s)	392, 487
Hsp92II	CATG	2 cut(s)	12, 79
KpnI	GGTACC	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	301, 326
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	9 cut(s)	57, 101, 230, 238, 245, 265, 393, 420, 474
LweI	GCATC	1 cut(s)	462
MalI	GATC	2 cut(s)	303, 328
MboI	GATC	2 cut(s)	301, 326
MhlI	GDGCHC	2 cut(s)	8, 488
MluCI	AATT	6 cut(s)	100, 186, 241, 293, 318, 363
MlyI	GAGTC	2 cut(s)	81, 147
MmeI	TCCRAC	3 cut(s)	87, 287, 392
MnlI	CCTC	2 cut(s)	308, 439
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	3 cut(s)	366, 378, 496
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	253, 408
MvaI	CCWGG	2 cut(s)	253, 408
MwoI	GCNNNNNNNGC	1 cut(s)	393
NdeII	GATC	2 cut(s)	301, 326
NlaIII	CATG	2 cut(s)	12, 79
NlaIV	GGNNCC	3 cut(s)	42, 61, 112
PagI	TCATGA	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	79, 331, 399
PflMI	CCANNNNNTGG	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	43
PleI	GAGTC	2 cut(s)	80, 147
PpsI	GAGTC	2 cut(s)	80, 147
PshBI	ATTAAT	1 cut(s)	366
Psp124BI	GAGCTC	2 cut(s)	8, 488
Psp6I	CCWGG	2 cut(s)	251, 406
PspGI	CCWGG	2 cut(s)	251, 406
PspN4I	GGNNCC	3 cut(s)	42, 61, 112
PstI	CTGCAG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SacI	GAGCTC	2 cut(s)	8, 488
SaqAI	TTAA	3 cut(s)	366, 378, 496
Sau3AI	GATC	2 cut(s)	301, 326
SchI	GAGTC	2 cut(s)	81, 147
ScrFI	CCNGG	2 cut(s)	253, 408
SduI	GDGCHC	2 cut(s)	8, 488
SetI	ASST	7 cut(s)	8, 90, 124, 234, 412, 476, 488
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	1 cut(s)	31
Sse9I	AATT	6 cut(s)	100, 186, 241, 293, 318, 363
SsiI	CCGC	1 cut(s)	396
SstI	GAGCTC	2 cut(s)	8, 488
StyD4I	CCNGG	2 cut(s)	251, 406
TaaI	ACNGT	2 cut(s)	59, 182
TaqI	TCGA	2 cut(s)	300, 329
TasI	AATT	6 cut(s)	100, 186, 241, 293, 318, 363
TfiI	GAWTC	3 cut(s)	79, 331, 399
Tru1I	TTAA	3 cut(s)	366, 378, 496
Tru9I	TTAA	3 cut(s)	366, 378, 496
TspDTI	ATGAA	1 cut(s)	339
Van91I	CCANNNNNTGG	1 cut(s)	199
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	3 cut(s)	100, 186, 293
XmiI	GTMKAC	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.