Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008883

Physical Location & Seq

Genomic Coordinates Reverse (-)

23985970 .. 23986179

Gene Structure 210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1165000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTTGGAGCTACAATCCCTGAAACTTGGAGGCTCTATATCACCACATGTTGGAAACTTGAGTTTTATCAGAGTGTATAGTCTCTTAAACAACAACTTCCGCCATGGAATCCCTCCAGAAATTGGCCGTCTGCGCAAGCTGCAAACTTTGGTATTGCACAATAATTCACCGAATGGGGAAATTCCAGCTAATTTATCAAGTTTAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

70

Amino Acids

7.56

Weight (kDa)

10.26

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008883)

Species	Orthologous Gene IDs
malus_domestica	MD03G1225100.v1.1 MD04G1149900.v1.1 MD04G1156300.v1.1 MD04G1157600.v1.1 MD04G1157800.v1.1 MD04G1158300.v1.1 MD04G1158700.v1.1 MD05G1075700.v1.1 MD07G1165000.v1.1 MD12G1130600.v1.1 MD12G1134600.v1.1 MD12G1134900.v1.1 MD12G1135400.v1.1 MD12G1136000.v1.1 MD12G1170300.v1.1 MD12G1170900.v1.1 MD13G1275400.v1.1
pyrus_communis	pycom12g10490 pycom12g12990 pycom12g13010 pycom12g16250
rosa_chinensis	RchiOBHm_Chr1g0356231
rosa_rugosa	Rorug03G0064300.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	134
AccB7I	CCANNNNNTGG	2 cut(s)	50, 122
AciI	CCGC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	180
AfiI	CCNNNNNNNGG	2 cut(s)	50, 122
AflIII	ACRYGT	1 cut(s)	46
AluBI	AGCT	3 cut(s)	10, 139, 188
AluI	AGCT	3 cut(s)	10, 139, 188
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	33, 159
BbvI	GCAGC	1 cut(s)	126
BceAI	ACGGC	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 122
BseDI	CCNNGG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	50, 122
BseXI	GCAGC	1 cut(s)	126
BshFI	GGCC	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	50, 122
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 139
BstNSI	RCATGY	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	137
CfoI	GCGC	1 cut(s)	135
CviAII	CATG	2 cut(s)	47, 104
CviJI	RGCY	6 cut(s)	10, 33, 126, 139, 188, 206
CviKI_1	RGCY	6 cut(s)	10, 33, 126, 139, 188, 206
EaeI	YGGCCR	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	50, 107
FaiI	YATR	4 cut(s)	38, 48, 78, 105
FatI	CATG	2 cut(s)	46, 103
Fnu4HI	GCNGC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	140
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	140
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	50, 107
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	108
HphI	GGTGA	2 cut(s)	33, 159
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	1 cut(s)	116
HpyCH4V	TGCA	2 cut(s)	142, 157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 139
Hsp92II	CATG	2 cut(s)	50, 107
HspAI	GCGC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	3 cut(s)	32, 129, 198
Lsp1109I	GCAGC	1 cut(s)	126
MluCI	AATT	4 cut(s)	120, 163, 180, 190
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	2 cut(s)	23, 123
MseI	TTAA	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	132, 139
NcoI	CCATGG	1 cut(s)	103
NlaIII	CATG	2 cut(s)	50, 107
NsbI	TGCGCA	1 cut(s)	134
NspI	RCATGY	1 cut(s)	50
PciI	ACATGT	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	108
PflMI	CCANNNNNTGG	2 cut(s)	50, 122
PkrI	GCNGC	1 cut(s)	141
PscI	ACATGT	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	1 cut(s)	140
SetI	ASST	3 cut(s)	12, 141, 190
SgeI	CNNG	8 cut(s)	31, 38, 59, 70, 116, 128, 148, 197
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	4 cut(s)	120, 163, 180, 190
SsiI	CCGC	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	103
TasI	AATT	4 cut(s)	120, 163, 180, 190
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TseI	GCWGC	1 cut(s)	139
Van91I	CCANNNNNTGG	2 cut(s)	50, 122
XapI	RAATTY	1 cut(s)	180
XceI	RCATGY	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.