Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0008883

Physical Location & Seq

Genomic Coordinates Reverse (-)

24558698 .. 24559924

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1157600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGATGGAGCATTCACGTAACAACCGTAAGCTGGTTTTGTTCAAATTCCTGCATGGGTTCATTCTTTTATGCATGAGCACATGCCTCGAATCTACAACACTTCGCAGCCTTACTCTCCTTGGAAATGAATCTGATCGCTTGGCACTGCTAGACTTCAAGAAAAGAATAACAGTTGATCCTTTCAATGTCATGAGCTCGTGGAATCATTCCATCCATTTCTGCAATTGGGTTGGAGTTTCATGCCACCATTCCACCAAAAGAGTCTTGATGTTGAACCTGAAATCAAAAAAGTTGGTAGGCTCCATTTCACCTTTAGTTGGAAATCTTACTTATCTTACTGGAATCAATTTGAGAGACAACAACTTTCATGGGGAAATTCCTCCAGAAATGGGTCGTCTACAAAGCCTACAATATCTCAACCTCTCTCATAATTCCTTTGGTGGGAAAATTCCAACTAATTTGTCGCAATGCATACAACTAAAATTGCTTAATCTGCAAGCCAATCGGATGATGGAGTCCATTCCAAACCAACTCAGTTCATTGTTGAATTTAAAATATCTACGGCTTGATGGTAACAATCTCACTGGAACTATCCCACCTTGGATAGGAAACTTTTCCTTGTTGAGTAGTCTAATACTTGGCAAGAACAATTTTCAAGGAAGCATACCCAATGAGCTTGGGCATATAGCAGGCTTGGAGGTGTTCGTAGTTGAGAAGAATGATCTATCTGGTATGATCCCATCCCCAATCTATAATATTTCTTCCATATCCACTTTTAGTGTTGCTGTCAACCAGTTGAATGGAGAGCTACCAACAAATCTCGGCACTATGCTTCCTAATCTCGTAGACCTTTACTGCGATGTGAACAAATTCACAGGAAATATTCCCATATCATTGTCAAATGCTTCAAGACTTCAGATGCTTGAACTTTCTCAAAATGGTTTCTCTGGGACAGTCCCTGGTGAGAGTCTAGGAAACTTGCATAGCTTAGTTTGGCTAAACTTTTATCGCAATCAGTTAGGAAATAGAAAAGTTGGTGACTTGAATTTTCTTAGTTTCTTGGCTAACTACACTAGTTTGCAGTATTTGAGTCTTTTCGATAATAATTTTGGAGGAGAAATTCCTGGATCCATAGCCAACCTTTCGACCCAACTTAATGTTCTTAGTCTGGGGGAAAATTTTATACATGGGATGGAAACCTTCCTAAGGGAATTGGAAACCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

409

Amino Acids

45.39

Weight (kDa)

8.18

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	43 - 81	9.6e-12	Leucine rich repeat N-terminal domain
LRR_8	PF13855	112 - 169	8.5e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008883)

Species	Orthologous Gene IDs
malus_domestica	MD03G1225100.v1.1 MD04G1149900.v1.1 MD04G1156300.v1.1 MD04G1157600.v1.1 MD04G1157800.v1.1 MD04G1158300.v1.1 MD04G1158700.v1.1 MD05G1075700.v1.1 MD07G1165000.v1.1 MD12G1130600.v1.1 MD12G1134600.v1.1 MD12G1134900.v1.1 MD12G1135400.v1.1 MD12G1136000.v1.1 MD12G1170300.v1.1 MD12G1170900.v1.1 MD13G1275400.v1.1
pyrus_communis	pycom12g10490 pycom12g12990 pycom12g13010 pycom12g16250
rosa_chinensis	RchiOBHm_Chr1g0356231
rosa_rugosa	Rorug03G0064300.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1225
AccI	GTMKAC	2 cut(s)	397, 846
AclWI	GGATC	4 cut(s)	170, 730, 1122, 1135
AcsI	RAATTY	8 cut(s)	44, 375, 447, 547, 869, 1045, 1119, 1177
AcuI	CTGAAG	1 cut(s)	899
AfiI	CCNNNNNNNGG	6 cut(s)	31, 317, 389, 441, 605, 1206
AhlI	ACTAGT	1 cut(s)	1073
AjnI	CCWGG	2 cut(s)	958, 1123
AjuI	GAANNNNNNNTTGG	2 cut(s)	1143, 1175
AluBI	AGCT	5 cut(s)	31, 195, 676, 808, 987
AluI	AGCT	5 cut(s)	31, 195, 676, 808, 987
Alw21I	GWGCWC	2 cut(s)	80, 197
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	4 cut(s)	170, 730, 1122, 1135
AlwNI	CAGNNNCTG	1 cut(s)	959
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	8 cut(s)	44, 375, 447, 547, 869, 1045, 1119, 1177
Asp700I	GAANNNNTTC	2 cut(s)	613, 869
AsuHPI	GGTGA	3 cut(s)	300, 974, 1049
AxyI	CCTNAGG	1 cut(s)	1205
BamHI	GGATCC	1 cut(s)	1127
BanII	GRGCYC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	196
Bbv12I	GWGCWC	2 cut(s)	80, 197
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	5 cut(s)	218, 505, 563, 748, 1186
BceAI	ACGGC	1 cut(s)	578
BcgI	CGANNNNNNTGC	4 cut(s)	67, 101, 485, 519
BciT130I	CCWGG	2 cut(s)	960, 1125
BcoDI	GTCTC	1 cut(s)	348
BcuI	ACTAGT	1 cut(s)	1073
BfaI	CTAG	3 cut(s)	149, 971, 1074
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	2 cut(s)	960, 1125
BmiI	GGNNCC	2 cut(s)	301, 1129
BmrFI	CCNGG	2 cut(s)	960, 1125
BmsI	GCATC	1 cut(s)	909
BpmI	CTGGAG	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	118, 599, 958
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 317, 389, 441, 605, 1206
Bse1I	ACTGG	3 cut(s)	343, 589, 793
Bse21I	CCTNAGG	1 cut(s)	1205
Bse3DI	GCAATG	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	960, 1125
BseDI	CCNNGG	3 cut(s)	118, 599, 958
BseGI	GGATG	4 cut(s)	210, 513, 740, 1197
BseLI	CCNNNNNNNGG	6 cut(s)	31, 317, 389, 441, 605, 1206
BseMI	GCAATG	1 cut(s)	473
BseMII	CTCAG	1 cut(s)	547
BseNI	ACTGG	3 cut(s)	343, 589, 793
BseRI	GAGGAG	1 cut(s)	1128
BseXI	GCAGC	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	80, 197
BslFI	GGGAC	2 cut(s)	941, 964
BslI	CCNNNNNNNGG	6 cut(s)	31, 317, 389, 441, 605, 1206
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	2 cut(s)	941, 964
BsmI	GAATGC	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	80, 197
Bsp143I	GATC	5 cut(s)	133, 175, 721, 735, 1127
BspCNI	CTCAG	1 cut(s)	546
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	301, 1129
BspPI	GGATC	4 cut(s)	170, 730, 1122, 1135
BsrDI	GCAATG	1 cut(s)	473
BsrI	ACTGG	3 cut(s)	343, 589, 793
BssECI	CCNNGG	3 cut(s)	118, 599, 958
BssMI	GATC	5 cut(s)	133, 175, 721, 735, 1127
BssSI	CACGAG	1 cut(s)	196
BssT1I	CCWWGG	2 cut(s)	118, 599
Bst2BI	CACGAG	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	960, 1125
Bst4CI	ACNGT	3 cut(s)	26, 172, 955
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	498, 691
BstDEI	CTNAG	5 cut(s)	533, 988, 1052, 1163, 1205
BstENI	CCTNNNNNAGG	2 cut(s)	603, 1204
BstF5I	GGATG	4 cut(s)	210, 513, 740, 1197
BstKTI	GATC	5 cut(s)	136, 178, 724, 738, 1130
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	5 cut(s)	133, 175, 721, 735, 1127
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	2 cut(s)	960, 1125
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	958, 1123
BstV1I	GCAGC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	1127
BstXI	CCANNNNNNTGG	1 cut(s)	800
BstYI	RGATCY	1 cut(s)	1127
Bsu36I	CCTNAGG	1 cut(s)	1205
BtgZI	GCGATG	1 cut(s)	873
BtsCI	GGATG	4 cut(s)	210, 513, 740, 1197
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	2 cut(s)	143, 582
Cac8I	GCNNGC	2 cut(s)	498, 691
CaiI	CAGNNNCTG	1 cut(s)	959
CciI	TCATGA	1 cut(s)	189
CviAII	CATG	7 cut(s)	53, 73, 81, 190, 240, 368, 1187
DdeI	CTNAG	5 cut(s)	533, 988, 1052, 1163, 1205
DpnI	GATC	5 cut(s)	135, 177, 723, 737, 1129
DpnII	GATC	5 cut(s)	133, 175, 721, 735, 1127
DraI	TTTAAA	1 cut(s)	552
Ecl136II	GAGCTC	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	118, 599
Eco24I	GRGCYC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	899
Eco81I	CCTNAGG	1 cut(s)	1205
EcoICRI	GAGCTC	1 cut(s)	195
EcoNI	CCTNNNNNAGG	2 cut(s)	603, 1204
EcoRII	CCWGG	2 cut(s)	958, 1123
EcoT14I	CCWWGG	2 cut(s)	118, 599
EcoT22I	ATGCAT	2 cut(s)	74, 473
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	2 cut(s)	118, 599
FaeI	CATG	7 cut(s)	56, 76, 84, 193, 243, 371, 1190
FaqI	GGGAC	2 cut(s)	941, 964
FatI	CATG	7 cut(s)	52, 72, 80, 189, 239, 367, 1186
FblI	GTMKAC	2 cut(s)	397, 846
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	4 cut(s)	197, 520, 727, 1204
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	3 cut(s)	149, 971, 1074
GluI	GCNGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	366
Hin1II	CATG	7 cut(s)	56, 76, 84, 193, 243, 371, 1190
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HinfI	GANTC	8 cut(s)	89, 128, 202, 261, 342, 515, 967, 1090
HphI	GGTGA	3 cut(s)	300, 974, 1049
Hpy166II	GTNNAC	4 cut(s)	398, 790, 847, 865
Hpy188I	TCNGA	3 cut(s)	133, 507, 918
Hpy188III	TCNNGA	5 cut(s)	157, 190, 265, 383, 909
Hpy8I	GTNNAC	4 cut(s)	398, 790, 847, 865
HpyAV	CCTTC	1 cut(s)	1210
HpyCH4III	ACNGT	3 cut(s)	26, 172, 955
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	7 cut(s)	52, 72, 222, 471, 496, 982, 1081
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	5 cut(s)	533, 988, 1052, 1163, 1205
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	7 cut(s)	56, 76, 84, 193, 243, 371, 1190
Kzo9I	GATC	5 cut(s)	133, 175, 721, 735, 1127
LmnI	GCTCC	2 cut(s)	7, 305
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	909
MaeI	CTAG	3 cut(s)	149, 971, 1074
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	3 cut(s)	17, 572, 1037
MalI	GATC	5 cut(s)	135, 177, 723, 737, 1129
MboI	GATC	5 cut(s)	133, 175, 721, 735, 1127
MboII	GAAGA	2 cut(s)	727, 753
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	1 cut(s)	1127
MhlI	GDGCHC	2 cut(s)	80, 197
MlyI	GAGTC	4 cut(s)	270, 524, 976, 1099
MmeI	TCCRAC	3 cut(s)	211, 298, 476
MnlI	CCTC	5 cut(s)	95, 390, 431, 691, 1106
Mph1103I	ATGCAT	2 cut(s)	74, 473
MroXI	GAANNNNTTC	2 cut(s)	613, 869
MseI	TTAA	3 cut(s)	489, 551, 1155
MspR9I	CCNGG	2 cut(s)	960, 1125
MunI	CAATTG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	960, 1125
MwoI	GCNNNNNNNGC	1 cut(s)	493
NdeII	GATC	5 cut(s)	133, 175, 721, 735, 1127
NlaIII	CATG	7 cut(s)	56, 76, 84, 193, 243, 371, 1190
NlaIV	GGNNCC	2 cut(s)	301, 1129
NmeAIII	GCCGAG	1 cut(s)	801
NmuCI	GTSAC	1 cut(s)	1037
NsiI	ATGCAT	2 cut(s)	74, 473
NspI	RCATGY	1 cut(s)	84
PagI	TCATGA	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	2 cut(s)	613, 869
PfeI	GAWTC	4 cut(s)	89, 128, 202, 342
PfoI	TCCNGGA	1 cut(s)	1123
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	4 cut(s)	269, 523, 975, 1098
PpsI	GAGTC	4 cut(s)	269, 523, 975, 1098
Ppu21I	YACGTR	1 cut(s)	17
PsiI	TTATAA	1 cut(s)	1225
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	958, 1123
PspGI	CCWGG	2 cut(s)	958, 1123
PspN4I	GGNNCC	2 cut(s)	301, 1129
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	1 cut(s)	1127
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	489, 551, 1155
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	5 cut(s)	133, 175, 721, 735, 1127
SchI	GAGTC	4 cut(s)	270, 524, 976, 1099
ScrFI	CCNGG	2 cut(s)	960, 1125
SduI	GDGCHC	2 cut(s)	80, 197
SfaNI	GCATC	1 cut(s)	909
SpeI	ACTAGT	1 cut(s)	1073
SspI	AATATT	2 cut(s)	757, 883
SspMI	CTAG	3 cut(s)	149, 971, 1074
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	958, 1123
StyI	CCWWGG	2 cut(s)	118, 599
TaaI	ACNGT	3 cut(s)	26, 172, 955
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	3 cut(s)	87, 1098, 1145
TfiI	GAWTC	4 cut(s)	89, 128, 202, 342
Tru1I	TTAA	3 cut(s)	489, 551, 1155
Tru9I	TTAA	3 cut(s)	489, 551, 1155
TscAI	CASTG	2 cut(s)	150, 589
TseFI	GTSAC	1 cut(s)	1037
TseI	GCWGC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	1037
TspDTI	ATGAA	5 cut(s)	49, 141, 228, 356, 528
TspRI	CASTG	2 cut(s)	150, 589
XagI	CCTNNNNNAGG	2 cut(s)	603, 1204
XapI	RAATTY	8 cut(s)	44, 375, 447, 547, 869, 1045, 1119, 1177
XceI	RCATGY	1 cut(s)	84
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmiI	GTMKAC	2 cut(s)	397, 846
XmnI	GAANNNNTTC	2 cut(s)	613, 869
XspI	CTAG	3 cut(s)	149, 971, 1074
Zsp2I	ATGCAT	2 cut(s)	74, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.