MD07G1170300.v1.1

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
24517655 .. 24525526
7872 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1170300.v1.1.491

Sequence Viewer

Length: 1857 bp
ATGCTCCGCTCAATCTCACATCCCTCAGGAAAGAAGTGTTTGGTCATTGATCAGAAGCTCAGCGGCTCTCTCTCGTCGATCATCCAGACTTCGATCCTCAAGGAACATGGAATTGAGTTGCGGCATCTTTCAGCTGATCCCATTCAAACCGACTGTTCCAAGCTGGTTTACCTTGTCCGTTCAGAGCTTACGTTGATGACATTAATTAGTTCGCATATTCATAATGATACATCAAAAGGACTGCATAGAGAATACTATGTTTATTTTGTCCCTCGCCGTGCAGTTGGGTGTGAGAAGATTCTTGAAGAGGAAAAGGTCTATCACTTGTTGACTATAGGGGAGTATCCGTTATACATTGTTCCTTTGGACGAGGATGTTTTGTCATTTGAACTTGATCTTTCTTGCAAGGAATGCCTAGTTGATGGTGATACGAGCTCTCTTTGGCATATTGCAAACGCGATTCACAGGCTTGAGTTTTCTTTTGGGGTGATACCAAATGTGAGGGCTAAAGGCAAAGGATCAGTGCGTGTGGCTGACATTCTAAACCGTATGCAAGCTGAGGAACCGGTTAACTCACCTGATATGGTTGTGCCAGAGATTAGTACTCTCATCCTTTTAGATAGGGAGGTAGACTTGGTAACTCCCATGTGTTCTCAATTAACATATGAAGGGCTTCTTGATGAGTTTCTGCATATCAACAATGGTGCTGTCGAGCTAGATGCTTCTTTCATGGGTGCGGCCCAACAAGAGGGAAAGAAGATGAAAGTTCCACTTAATTCAAGGTGTTTTCATTGTTTCCTTGAAAGATTTGCTAATTCAAGGGCATCATGTCACACATATACTCATTTTAAGTCTTTTGGCACATCCATTACACTCGTTGCTCTCAAATGCCCATACCATCTTAGTCTTTTCTTTCTTGACAAGCTGTTTAAAGAGTTACGGGATCTCAACTTTGAAGTTGTTGGCCAGAACCAGACAGTTTCTGAATTGAAGGACTTTGTTAAAAAACTGAACTCGTTGCCAGAAATGACTAGGCACATAAATCTTGCTCAGCATCTGTCAACGTTCACGTCAAAGACATCATTTCTTGGACAACTTGACATGGAACACACAATTATTGAGGGTCAAAGTTATGACATATGCTTTGAGCATATTGAAGAAATGATCCATAAGCAGGAGCCTCTTGTGAACGTCCTACGTGTTCTCATATTGTTTTCTATTACAAATTCTGGGAGAGAACTAATCCATAGTTATGGATTCGAGCACATGGTTACACTGAATAATTTAGAGAAAGCTGGATTGCTTAAAAAACAGACGAAAAGCAACTGGCTGACAGTTAAACGTGCCCTGCAACTTGTAGTTGAGGACACTGACACTGCAAATCCCAATGATATTTCCTATGTGTTTTCTGGATATGCACCTCTTAGCATTCGCCTCATCCAGCATGCTGTTCGATCTGGATGTTGGTATTACAAGATGGTTTCTTGGTCTTGCCTCTTCTACATGATTTACCGTCGTCCCATCAGAAATTCATTACACCAGTCTTTTACTATATACAGGCGTCCTATTGAAGAGATTCTGAGGCTTTTACCCGGACCACATTCAGAACTAAAGAGAGGCAGATTCTCAAGCAGCCCGTCGTTAGACACTTTGCAGGGGCATTCGGCCAATGTAAACAAGGTATCTGATGGAAGGCGTTCTCTAGTACTTGTTGTCTTCGTTGGAGGTGTAACGTTTGCGGAGATCTCTGCTCTTCGATTTCTCAGTGCTCAGGAAGGGATGGCATATGATTTGATAATTGGGACCACGAAAATCGCCAACGGCCGTAGCTTGATTGAAACATTTGTGGGAAGTTAG

Protein Analysis

619

Amino Acids

70.03

Weight (kDa)

6.8

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 12 - 613 5.4e-90 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 630
AccII CGCG 1 cut(s) 458
AciI CCGC 5 cut(s) 7, 63, 121, 737, 1739
AclI AACGTT 2 cut(s) 1064, 1733
AclWI GGATC 5 cut(s) 88, 131, 526, 951, 1159
AcoI YGGCCR 3 cut(s) 964, 1665, 1822
AcsI RAATTY 2 cut(s) 1225, 1528
AcyI GRCGYC 1 cut(s) 1561
AfaI GTAC 2 cut(s) 604, 1707
AfiI CCNNNNNNNGG 2 cut(s) 748, 1174
AflIII ACRYGT 1 cut(s) 1198
AgeI ACCGGT 1 cut(s) 565
AjiI CACGTC 1 cut(s) 1071
Alw21I GWGCWC 3 cut(s) 437, 1266, 1771
AlwI GGATC 5 cut(s) 88, 131, 526, 951, 1159
AlwNI CAGNNNCTG 2 cut(s) 983, 1057
AoxI GGCC 4 cut(s) 738, 964, 1665, 1822
ApeKI GCWGC 1 cut(s) 1632
ApoI RAATTY 2 cut(s) 1225, 1528
ArsI GACNNNNNNTTYG 2 cut(s) 1127, 1159
AseI ATTAAT 1 cut(s) 203
AsiGI ACCGGT 1 cut(s) 565
Asp700I GAANNNNTTC 3 cut(s) 672, 1575, 1696
AspS9I GGNCC 3 cut(s) 739, 1595, 1803
AsuC2I CCSGG 1 cut(s) 1593
AsuHPI GGTGA 3 cut(s) 437, 499, 567
AvaII GGWCC 2 cut(s) 1595, 1803
AxyI CCTNAGG 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 1348
BalI TGGCCA 1 cut(s) 966
BanII GRGCYC 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 1708
Bbv12I GWGCWC 3 cut(s) 437, 1266, 1771
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 1 cut(s) 1644
BccI CCATC 6 cut(s) 416, 906, 1471, 1529, 1682, 1774
BceAI ACGGC 3 cut(s) 261, 1809, 1837
BcgI CGANNNNNNTGC 4 cut(s) 701, 735, 1433, 1467
BciVI GTATCC 1 cut(s) 354
BclI TGATCA 1 cut(s) 49
BcnI CCSGG 1 cut(s) 1593
BfaI CTAG 4 cut(s) 416, 716, 1032, 1703
BfmI CTRYAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 354
BglII AGATCT 1 cut(s) 1743
BisI GCNGC 4 cut(s) 64, 122, 738, 1633
BlpI GCTNAGC 2 cut(s) 59, 1050
BlsI GCNGC 4 cut(s) 65, 123, 739, 1634
BmcAI AGTACT 2 cut(s) 604, 1707
Bme1390I CCNGG 1 cut(s) 1593
Bme18I GGWCC 2 cut(s) 1595, 1803
BmgBI CACGTC 1 cut(s) 1071
BmgT120I GGNCC 3 cut(s) 739, 1595, 1803
BmiI GGNNCC 3 cut(s) 564, 1179, 1804
BmrFI CCNGG 1 cut(s) 1593
BmsI GCATC 4 cut(s) 133, 709, 833, 1063
BpiI GAAGAC 1 cut(s) 1708
Bpu10I CCTNAGC 2 cut(s) 558, 1770
Bpu1102I GCTNAGC 2 cut(s) 59, 1050
BpuEI CTTGAG 3 cut(s) 83, 491, 1612
BpuMI CCSGG 1 cut(s) 1593
BsaAI YACGTR 1 cut(s) 1199
BsaHI GRCGYC 1 cut(s) 1561
BsaWI WCCGGW 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 748, 1174
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 2 cut(s) 1331, 1540
Bse21I CCTNAGG 1 cut(s) 25
BseGI GGATG 8 cut(s) 19, 81, 379, 609, 863, 1437, 1466, 1785
BseLI CCNNNNNNNGG 2 cut(s) 748, 1174
BseMII CTCAG 7 cut(s) 39, 73, 549, 1064, 1571, 1777, 1784
BseNI ACTGG 2 cut(s) 1331, 1540
BseSI GKGCMC 1 cut(s) 1348
BseX3I CGGCCG 1 cut(s) 1822
BseXI GCAGC 1 cut(s) 1644
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 458
Bsh1285I CGRYCG 1 cut(s) 1825
BshFI GGCC 4 cut(s) 740, 966, 1667, 1824
BshTI ACCGGT 1 cut(s) 565
BsiEI CGRYCG 1 cut(s) 1825
BsiHKAI GWGCWC 3 cut(s) 437, 1266, 1771
BsiSI CCGG 2 cut(s) 566, 1593
BslFI GGGAC 3 cut(s) 254, 1503, 1816
BslI CCNNNNNNNGG 2 cut(s) 748, 1174
BsmFI GGGAC 3 cut(s) 254, 1503, 1816
BsmI GAATGC 3 cut(s) 416, 1428, 1660
BsnI GGCC 4 cut(s) 740, 966, 1667, 1824
Bsp1286I GDGCHC 4 cut(s) 437, 1266, 1348, 1771
Bsp1720I GCTNAGC 2 cut(s) 59, 1050
BspACI CCGC 5 cut(s) 7, 63, 121, 737, 1739
BspANI GGCC 4 cut(s) 740, 966, 1667, 1824
BspCNI CTCAG 7 cut(s) 38, 72, 550, 1063, 1572, 1776, 1783
BspFNI CGCG 1 cut(s) 458
BspLI GGNNCC 3 cut(s) 564, 1179, 1804
BspPI GGATC 5 cut(s) 88, 131, 526, 951, 1159
BspQI GCTCTTC 1 cut(s) 1758
BsrBI CCGCTC 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 565
BsrI ACTGG 2 cut(s) 1331, 1540
BssAI RCCGGY 1 cut(s) 565
BssNI GRCGYC 1 cut(s) 1561
Bst4CI ACNGT 5 cut(s) 155, 548, 979, 1336, 1514
Bst6I CTCTTC 4 cut(s) 300, 1502, 1566, 1758
BstACI GRCGYC 1 cut(s) 1561
BstAPI GCANNNNNTGC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 1199
BstC8I GCNNGC 2 cut(s) 555, 1446
BstDEI CTNAG 9 cut(s) 25, 59, 558, 902, 1050, 1424, 1580, 1763, 1770
BstF5I GGATG 8 cut(s) 19, 81, 379, 609, 863, 1437, 1466, 1785
BstFNI CGCG 1 cut(s) 458
BstMCI CGRYCG 1 cut(s) 1825
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 1448
BstSCI CCNGG 1 cut(s) 1591
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 1348
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 1 cut(s) 1644
BstV2I GAAGAC 1 cut(s) 1708
BstX2I RGATCY 2 cut(s) 943, 1743
BstXI CCANNNNNNTGG 1 cut(s) 1253
BstYI RGATCY 2 cut(s) 943, 1743
BstZI CGGCCG 1 cut(s) 1822
Bsu36I CCTNAGG 1 cut(s) 25
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 4 cut(s) 740, 966, 1667, 1824
BtrI CACGTC 1 cut(s) 1071
BtsCI GGATG 8 cut(s) 19, 81, 379, 609, 863, 1437, 1466, 1785
BtsI GCAGTG 1 cut(s) 1374
BtsIMutI CAGTG 5 cut(s) 528, 1274, 1368, 1374, 1771
Cac8I GCNNGC 2 cut(s) 555, 1446
CaiI CAGNNNCTG 2 cut(s) 983, 1057
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 3 cut(s) 739, 1595, 1803
CseI GACGC 1 cut(s) 1550
Csp6I GTAC 2 cut(s) 603, 1706
CspAI ACCGGT 1 cut(s) 565
CviAII CATG 8 cut(s) 107, 646, 730, 828, 1102, 1267, 1445, 1504
CviQI GTAC 2 cut(s) 603, 1706
DdeI CTNAG 9 cut(s) 25, 59, 558, 902, 1050, 1424, 1580, 1763, 1770
DraI TTTAAA 1 cut(s) 931
EaeI YGGCCR 3 cut(s) 964, 1665, 1822
EagI CGGCCG 1 cut(s) 1822
Eam1104I CTCTTC 4 cut(s) 300, 1502, 1566, 1758
EarI CTCTTC 4 cut(s) 300, 1502, 1566, 1758
Ecl136II GAGCTC 1 cut(s) 435
EclXI CGGCCG 1 cut(s) 1822
Eco24I GRGCYC 1 cut(s) 437
Eco47I GGWCC 2 cut(s) 1595, 1803
Eco52I CGGCCG 1 cut(s) 1822
Eco53kI GAGCTC 1 cut(s) 435
Eco81I CCTNAGG 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 437
FaeI CATG 8 cut(s) 110, 649, 733, 831, 1105, 1270, 1448, 1507
FalI AAGNNNNNCTT 4 cut(s) 660, 692, 756, 788
FaqI GGGAC 3 cut(s) 254, 1503, 1816
FatI CATG 8 cut(s) 106, 645, 729, 827, 1101, 1266, 1444, 1503
FauNDI CATATG 3 cut(s) 664, 1139, 1786
FbaI TGATCA 1 cut(s) 49
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 4 cut(s) 64, 122, 738, 1633
FokI GGATG 8 cut(s) 6, 68, 386, 596, 850, 1424, 1473, 1792
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 4 cut(s) 64, 122, 738, 1633
FspBI CTAG 4 cut(s) 416, 716, 1032, 1703
GluI GCNGC 4 cut(s) 64, 122, 738, 1633
HaeIII GGCC 4 cut(s) 740, 966, 1667, 1824
HapII CCGG 2 cut(s) 566, 1593
HgaI GACGC 1 cut(s) 1550
Hin1I GRCGYC 1 cut(s) 1561
Hin1II CATG 8 cut(s) 110, 649, 733, 831, 1105, 1270, 1448, 1507
HincII GTYRAC 3 cut(s) 330, 571, 1062
HindII GTYRAC 3 cut(s) 330, 571, 1062
HinfI GANTC 5 cut(s) 298, 460, 1257, 1576, 1623
HpaI GTTAAC 1 cut(s) 571
HpaII CCGG 2 cut(s) 566, 1593
HphI GGTGA 3 cut(s) 437, 499, 567
Hpy166II GTNNAC 8 cut(s) 169, 330, 571, 631, 1062, 1068, 1189, 1675
Hpy188I TCNGA 7 cut(s) 54, 184, 985, 1526, 1581, 1606, 1687
Hpy188III TCNNGA 8 cut(s) 27, 85, 302, 677, 917, 1410, 1458, 1772
Hpy8I GTNNAC 8 cut(s) 169, 330, 571, 631, 1062, 1068, 1189, 1675
Hpy99I CGWCG 3 cut(s) 79, 1518, 1642
HpyAV CCTTC 4 cut(s) 662, 985, 1686, 1769
HpyCH4III ACNGT 5 cut(s) 155, 548, 979, 1336, 1514
HpyCH4IV ACGT 7 cut(s) 191, 1064, 1070, 1191, 1198, 1342, 1733
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 9 cut(s) 25, 59, 558, 902, 1050, 1424, 1580, 1763, 1770
HpySE526I ACGT 7 cut(s) 191, 1064, 1070, 1191, 1198, 1342, 1733
Hsp92I GRCGYC 1 cut(s) 1561
Hsp92II CATG 8 cut(s) 110, 649, 733, 831, 1105, 1270, 1448, 1507
Ksp22I TGATCA 1 cut(s) 49
KspAI GTTAAC 1 cut(s) 571
LguI GCTCTTC 1 cut(s) 1758
LmnI GCTCC 2 cut(s) 9, 1177
Lsp1109I GCAGC 1 cut(s) 1644
LweI GCATC 4 cut(s) 133, 709, 833, 1063
MaeI CTAG 4 cut(s) 416, 716, 1032, 1703
MaeII ACGT 7 cut(s) 191, 1064, 1070, 1191, 1198, 1342, 1733
MaeIII GTNAC 5 cut(s) 637, 830, 936, 1270, 1729
MbiI CCGCTC 1 cut(s) 9
MboII GAAGA 8 cut(s) 307, 317, 769, 1169, 1489, 1583, 1708, 1745
MflI RGATCY 2 cut(s) 943, 1743
MhlI GDGCHC 4 cut(s) 437, 1266, 1348, 1771
MlsI TGGCCA 1 cut(s) 966
MluNI TGGCCA 1 cut(s) 966
MmeI TCCRAC 1 cut(s) 1702
Mox20I TGGCCA 1 cut(s) 966
MroXI GAANNNNTTC 3 cut(s) 672, 1575, 1696
MscI TGGCCA 1 cut(s) 966
MseI TTAA 9 cut(s) 203, 570, 659, 774, 849, 930, 1002, 1305, 1338
MslI CAYNNNNRTG 1 cut(s) 1251
Msp20I TGGCCA 1 cut(s) 966
MspA1I CMGCKG 2 cut(s) 63, 134
MspI CCGG 2 cut(s) 566, 1593
MspR9I CCNGG 1 cut(s) 1593
Mva1269I GAATGC 3 cut(s) 416, 1428, 1660
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 1 cut(s) 411
NciI CCSGG 1 cut(s) 1593
NdeI CATATG 3 cut(s) 664, 1139, 1786
NlaIII CATG 8 cut(s) 110, 649, 733, 831, 1105, 1270, 1448, 1507
NlaIV GGNNCC 3 cut(s) 564, 1179, 1804
NmuCI GTSAC 1 cut(s) 830
NspI RCATGY 1 cut(s) 1448
PaeI GCATGC 1 cut(s) 1448
PciSI GCTCTTC 1 cut(s) 1758
PctI GAATGC 3 cut(s) 416, 1428, 1660
PdmI GAANNNNTTC 3 cut(s) 672, 1575, 1696
PfeI GAWTC 5 cut(s) 298, 460, 1257, 1576, 1623
PinAI ACCGGT 1 cut(s) 565
PkrI GCNGC 4 cut(s) 65, 123, 739, 1634
Ppu21I YACGTR 1 cut(s) 1199
PshBI ATTAAT 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 437
Psp1406I AACGTT 2 cut(s) 1064, 1733
PspN4I GGNNCC 3 cut(s) 564, 1179, 1804
PspPI GGNCC 3 cut(s) 739, 1595, 1803
PstNI CAGNNNCTG 2 cut(s) 983, 1057
PsuI RGATCY 2 cut(s) 943, 1743
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 2 cut(s) 604, 1707
RsaNI GTAC 2 cut(s) 603, 1706
RseI CAYNNNNRTG 1 cut(s) 1251
SacI GAGCTC 1 cut(s) 437
SapI GCTCTTC 1 cut(s) 1758
SaqAI TTAA 9 cut(s) 203, 570, 659, 774, 849, 930, 1002, 1305, 1338
SatI GCNGC 4 cut(s) 64, 122, 738, 1633
Sau96I GGNCC 3 cut(s) 739, 1595, 1803
ScaI AGTACT 2 cut(s) 604, 1707
ScrFI CCNGG 1 cut(s) 1593
SduI GDGCHC 4 cut(s) 437, 1266, 1348, 1771
SfaNI GCATC 4 cut(s) 133, 709, 833, 1063
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 2 cut(s) 1595, 1803
SmiMI CAYNNNNRTG 1 cut(s) 1251
SmlI CTYRAG 3 cut(s) 98, 470, 1627
SmoI CTYRAG 3 cut(s) 98, 470, 1627
SphI GCATGC 1 cut(s) 1448
SsiI CCGC 5 cut(s) 7, 63, 121, 737, 1739
SspMI CTAG 4 cut(s) 416, 716, 1032, 1703
SstI GAGCTC 1 cut(s) 437
StyD4I CCNGG 1 cut(s) 1591
TaaI ACNGT 5 cut(s) 155, 548, 979, 1336, 1514
TaiI ACGT 7 cut(s) 194, 1067, 1073, 1194, 1201, 1345, 1736
TaqI TCGA 6 cut(s) 77, 92, 711, 1260, 1453, 1756
TatI WGTACW 2 cut(s) 602, 1705
TauI GCSGC 3 cut(s) 66, 124, 740
TfiI GAWTC 5 cut(s) 298, 460, 1257, 1576, 1623
Tru1I TTAA 9 cut(s) 203, 570, 659, 774, 849, 930, 1002, 1305, 1338
Tru9I TTAA 9 cut(s) 203, 570, 659, 774, 849, 930, 1002, 1305, 1338
TscAI CASTG 5 cut(s) 528, 1281, 1375, 1381, 1771
TseFI GTSAC 1 cut(s) 830
TseI GCWGC 1 cut(s) 1632
Tsp45I GTSAC 1 cut(s) 830
TspDTI ATGAA 6 cut(s) 209, 681, 718, 776, 779, 1521
TspGWI ACGGA 2 cut(s) 167, 336
TspRI CASTG 5 cut(s) 528, 1281, 1375, 1381, 1771
VpaK11BI GGWCC 2 cut(s) 1595, 1803
VspI ATTAAT 1 cut(s) 203
XapI RAATTY 2 cut(s) 1225, 1528
XceI RCATGY 1 cut(s) 1448
XmiI GTMKAC 1 cut(s) 630
XmnI GAANNNNTTC 3 cut(s) 672, 1575, 1696
XspI CTAG 4 cut(s) 416, 716, 1032, 1703
ZrmI AGTACT 2 cut(s) 604, 1707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.