Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002923.1

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Forward (+)

140879 .. 141681

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002923.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgcactcattgccagaagtgacaaggcacataaatcttgctaagcatctgatgactttcacgtcgaagccatcatttcgtggactacttgacgtggaacaaacaatcgttgagactgagagttttgacatatgcttagattacattgaagaaatgatgcataagcaggagcctcttgagacaaaaggcaagcggctgagagttaagcgtgccttacaacttgtcattgaacacagtgacacagctaattccaatgacattgactatgtcttttctggatatgcacctcttagcattcgccttgttcagcatgctattcaatctggatggcgtccgattgaagaaactctaaagctgttacccggaccacattcagaaacaaaaagaggcccgttctcaagcagcgcatcatttgacaattttcagggggcagaaaccaatgtagacaagctagggatcgcatatgatttcatagttgggacaacgaaaatggttagtggccatagcttgactgaaacatttgtggggaagatggaggacctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

181

Amino Acids

20.41

Weight (kDa)

5.73

Isoelectric Point (pI)

59.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	464
AcoI	YGGCCR	1 cut(s)	499
AcyI	GRCGYC	1 cut(s)	331
AgsI	TTSAA	4 cut(s)	149, 230, 320, 341
AjiI	CACGTC	2 cut(s)	63, 94
AluBI	AGCT	4 cut(s)	245, 355, 451, 507
AluI	AGCT	4 cut(s)	245, 355, 451, 507
Alw26I	GTCTC	2 cut(s)	107, 173
AlwI	GGATC	1 cut(s)	464
AoxI	GGCC	2 cut(s)	388, 499
ApeKI	GCWGC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	3 cut(s)	365, 389, 538
AsuC2I	CCSGG	1 cut(s)	363
AvaII	GGWCC	2 cut(s)	365, 538
BalI	TGGCCA	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	3 cut(s)	79, 321, 526
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	107, 173
BfaI	CTAG	1 cut(s)	452
BisI	GCNGC	2 cut(s)	194, 403
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	2 cut(s)	195, 404
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	2 cut(s)	365, 538
BmgBI	CACGTC	2 cut(s)	63, 94
BmgT120I	GGNCC	3 cut(s)	365, 389, 538
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	3 cut(s)	55, 147, 416
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	197, 382
BpuMI	CCSGG	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	331
BsaXI	ACNNNNNCTCC	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	8
BseMII	CTCAG	2 cut(s)	108, 188
BseXI	GCAGC	1 cut(s)	414
BshFI	GGCC	2 cut(s)	390, 501
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	493
BsmAI	GTCTC	2 cut(s)	107, 173
BsmFI	GGGAC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	2 cut(s)	390, 501
Bsp143I	GATC	1 cut(s)	456
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	2 cut(s)	390, 501
BspCNI	CTCAG	2 cut(s)	109, 189
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	8
BssMI	GATC	1 cut(s)	456
BssNI	GRCGYC	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	331
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	3 cut(s)	191, 210, 312
BstDEI	CTNAG	5 cut(s)	42, 117, 136, 197, 290
BstF5I	GGATG	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	1 cut(s)	459
BstMAI	GTCTC	2 cut(s)	107, 173
BstMBI	GATC	1 cut(s)	456
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	390, 501
BtrI	CACGTC	2 cut(s)	63, 94
BtsCI	GGATG	1 cut(s)	332
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	3 cut(s)	191, 210, 312
CfoI	GCGC	1 cut(s)	407
Cfr13I	GGNCC	3 cut(s)	365, 389, 538
CseI	GACGC	1 cut(s)	320
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	9 cut(s)	70, 172, 196, 245, 355, 390, 451, 501, 507
CviKI_1	RGCY	9 cut(s)	70, 172, 196, 245, 355, 390, 451, 501, 507
DdeI	CTNAG	5 cut(s)	42, 117, 136, 197, 290
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	499
Eco47I	GGWCC	2 cut(s)	365, 538
EcoO109I	RGGNCCY	1 cut(s)	538
EcoT22I	ATGCAT	1 cut(s)	162
FaeI	CATG	1 cut(s)	314
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	1 cut(s)	310
FauNDI	CATATG	2 cut(s)	131, 463
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	194, 403
FokI	GGATG	1 cut(s)	339
Fsp4HI	GCNGC	2 cut(s)	194, 403
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	2 cut(s)	194, 403
HaeIII	GGCC	2 cut(s)	390, 501
HapII	CCGG	1 cut(s)	363
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	331
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HpaII	CCGG	1 cut(s)	363
Hpy166II	GTNNAC	2 cut(s)	83, 445
Hpy188I	TCNGA	3 cut(s)	51, 336, 376
Hpy188III	TCNNGA	3 cut(s)	176, 276, 324
Hpy8I	GTNNAC	2 cut(s)	83, 445
Hpy99I	CGWCG	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	2 cut(s)	62, 93
HpyCH4V	TGCA	3 cut(s)	4, 160, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	5 cut(s)	42, 117, 136, 197, 290
HpySE526I	ACGT	2 cut(s)	62, 93
Hsp92I	GRCGYC	1 cut(s)	331
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	456
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	6 cut(s)	27, 152, 261, 309, 376, 410
Lsp1109I	GCAGC	1 cut(s)	414
LweI	GCATC	3 cut(s)	55, 147, 416
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	2 cut(s)	62, 93
MaeIII	GTNAC	3 cut(s)	19, 236, 357
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MboII	GAAGA	3 cut(s)	161, 353, 541
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	2 cut(s)	247, 418
MluNI	TGGCCA	1 cut(s)	501
MnlI	CCTC	4 cut(s)	183, 297, 380, 529
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	501
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	363
NdeI	CATATG	2 cut(s)	131, 463
NdeII	GATC	1 cut(s)	456
NlaIII	CATG	1 cut(s)	314
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	2 cut(s)	19, 236
NsiI	ATGCAT	1 cut(s)	162
NspI	RCATGY	1 cut(s)	314
PaeI	GCATGC	1 cut(s)	314
PctI	GAATGC	1 cut(s)	294
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	195, 404
PpuMI	RGGWCCY	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	3 cut(s)	365, 389, 538
PspPPI	RGGWCCY	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	194, 403
Sau3AI	GATC	1 cut(s)	456
Sau96I	GGNCC	3 cut(s)	365, 389, 538
ScrFI	CCNGG	1 cut(s)	363
SetI	ASST	8 cut(s)	65, 96, 247, 289, 357, 453, 509, 543
SfaNI	GCATC	3 cut(s)	55, 147, 416
SinI	GGWCC	2 cut(s)	365, 538
SmlI	CTYRAG	2 cut(s)	176, 397
SmoI	CTYRAG	2 cut(s)	176, 397
SphI	GCATGC	1 cut(s)	314
Sse9I	AATT	2 cut(s)	247, 418
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	2 cut(s)	65, 96
TaqI	TCGA	1 cut(s)	65
TasI	AATT	2 cut(s)	247, 418
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	19, 236
TseI	GCWGC	1 cut(s)	402
Tsp45I	GTSAC	2 cut(s)	19, 236
TspDTI	ATGAA	1 cut(s)	460
TspRI	CASTG	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	365, 538
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.