Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Forward (+)

18808026 .. 18809480

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16410.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCAAGCTGAGGAACCGGTTAACTCACCTGATATGGTTGTGCCAGAGATAAATACTCTCATCCTTTTAGATAGGGAGGTGGACTTGGTAACTCCCATGTGTTCTCAATTAACATATGAAGGGCTTCTTGATGAGTTTCTGCATGTCAACAATGGTGCTGTCGAGCTAGATGCATCTTTCATGGGGGTGGCCCAACAAGAGGGAAAGAAGATGAAAGTTCCACTTAATTCAAGTGACAAGCTGTTTAAAGAGTTACGGGATCGATCAACTTTGAAGTTGTTGGCCAGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

98

Amino Acids

10.82

Weight (kDa)

4.52

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgeI	ACCGGT	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	231, 274
AluBI	AGCT	4 cut(s)	8, 166, 241, 288
AluI	AGCT	4 cut(s)	8, 166, 241, 288
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	2 cut(s)	189, 282
AsiGI	ACCGGT	1 cut(s)	16
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	18
BalI	TGGCCA	1 cut(s)	284
BbvCI	CCTCAGC	1 cut(s)	9
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BfaI	CTAG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	15
BmsI	GCATC	2 cut(s)	160, 182
Bpu10I	CCTNAGC	1 cut(s)	9
Bsa29I	ATCGAT	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	262
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	191, 284
BshTI	ACCGGT	1 cut(s)	16
BshVI	ATCGAT	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	199
BsnI	GGCC	2 cut(s)	191, 284
Bsp143I	GATC	2 cut(s)	259, 263
BspANI	GGCC	2 cut(s)	191, 284
BspDI	ATCGAT	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	16
BssMI	GATC	2 cut(s)	259, 263
BstC8I	GCNNGC	2 cut(s)	6, 286
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	262, 266
BstMBI	GATC	2 cut(s)	259, 263
BstNSI	RCATGY	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	191, 284
BsuTUI	ATCGAT	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	6, 286
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	190
ClaI	ATCGAT	1 cut(s)	262
CspAI	ACCGGT	1 cut(s)	16
CviAII	CATG	3 cut(s)	97, 143, 181
CviJI	RGCY	7 cut(s)	8, 124, 166, 191, 241, 284, 288
CviKI_1	RGCY	7 cut(s)	8, 124, 166, 191, 241, 284, 288
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	2 cut(s)	261, 265
DpnII	GATC	2 cut(s)	259, 263
DraI	TTTAAA	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	175
FaeI	CATG	3 cut(s)	100, 146, 184
FaiI	YATR	7 cut(s)	35, 98, 115, 117, 144, 182, 292
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 207, 239
FatI	CATG	3 cut(s)	96, 142, 180
FauNDI	CATATG	1 cut(s)	115
FokI	GGATG	1 cut(s)	47
FspBI	CTAG	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	191, 284
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	3 cut(s)	100, 146, 184
HincII	GTYRAC	2 cut(s)	22, 148
HindII	GTYRAC	2 cut(s)	22, 148
HpaI	GTTAAC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	3 cut(s)	22, 82, 148
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	3 cut(s)	22, 82, 148
HpyAV	CCTTC	1 cut(s)	113
HpyCH4V	TGCA	3 cut(s)	4, 142, 173
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	100, 146, 184
KspAI	GTTAAC	1 cut(s)	22
Kzo9I	GATC	2 cut(s)	259, 263
LpnPI	CCDG	3 cut(s)	30, 42, 57
LweI	GCATC	2 cut(s)	160, 182
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	3 cut(s)	88, 233, 252
MalI	GATC	2 cut(s)	261, 265
MboI	GATC	2 cut(s)	259, 263
MboII	GAAGA	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	2 cut(s)	107, 226
MluNI	TGGCCA	1 cut(s)	284
MnlI	CCTC	3 cut(s)	4, 70, 193
Mox20I	TGGCCA	1 cut(s)	284
Mph1103I	ATGCAT	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	4 cut(s)	21, 110, 225, 246
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	284
MspI	CCGG	1 cut(s)	17
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	2 cut(s)	259, 263
NlaIII	CATG	3 cut(s)	100, 146, 184
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	175
NspI	RCATGY	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	123
PinAI	ACCGGT	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	4 cut(s)	21, 110, 225, 246
Sau3AI	GATC	2 cut(s)	259, 263
Sau96I	GGNCC	1 cut(s)	190
SetI	ASST	6 cut(s)	10, 31, 81, 168, 243, 290
SfaNI	GCATC	2 cut(s)	160, 182
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	107, 226
SspMI	CTAG	1 cut(s)	167
TaqI	TCGA	2 cut(s)	162, 262
TasI	AATT	2 cut(s)	107, 226
Tru1I	TTAA	4 cut(s)	21, 110, 225, 246
Tru9I	TTAA	4 cut(s)	21, 110, 225, 246
TseFI	GTSAC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	132, 169, 227
XceI	RCATGY	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.