Prupe.2G209100_v2.0.a1

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
24217214 .. 24224379
7166 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G209100.1

Sequence Viewer

Length: 1785 bp
ATGGCTCAGATTCCCAACTTAGACAATGCTCCTCTCAATCTCAATTCTCTCAGGGAACAGTCTCAGAAGGAACTCGTAAACATCCTCAAGAATATTCGAGGAAAGAAGTGTTTGGTCATCGATCCGAAGCTCAGCGGCTCTCTCTCATCGATCATCCAGACTGCAATTCTCAAAGAGCATGGGATTGAATTGCGACATCTTTCGGTTGACCCGATTCAAACCGACTGTTCCAAGCTGGTTTACCTTGTCCGCTCGGAGCTTAGTTTGATGAGATTCATTAGTTCGCATGTTCATAATGATACGTCAAAAGGACTACAGAGAGAATACTATGTCTATTTTGTCCCTCGCCGGTCGGTTGCTTGTGAGAAGATCCTTGAGGAGGAAAAAGTACATAACTTGTTGACTATAGGGGAGTACCCGCTATACTTTGTTCCTTTGGACGAGGATGTTTTGTCATTTGAACTTGATCTTGCTAACAAAGAATGCCTGGTTGATGGTGATACAAGCTCACTTTGGCATATTGCAAAAGCCATTCACAAGCTTGAGTTTTCTTTTGGGGTGATACCAAATGTGAGGGCAAAAGGCAAATCATCAGTTCGTGTTGCTGACATTCTAAACCGCATGCAAGCAGAGGAACCAGTTAACTCGCCAGATATGGTTGTGCCAGAGATAAATACTCTCGTCCTTTTAGATAGGGAGGTGGACATGGTAACTCCCATGTGTTCTCAATTGACATATGAAGGGCTTCTTGATGAGTTTCTGCATATCAATAATGGTGCTGTCGAGCTTGATGCATCTGTCATGGGAGTCCAACAAGAGGGCAAGAAGATAAAAGTTCCACTTAATTCAAGCGACAAGCTGTTTAAAGAGATACGTGATCTCAACTTCGAAGTTGTTGGCCAGATTCTACGTCAAAAAGCAACATCAATGAAGCAGGACTACACCGAGGTGACTACCAATAACCAGACAGTTTCTGAATTGAAAGACTTTGTCAAAAAGCTGAATTCATTGCCAGAAATGACGAGGCACATAAATCTTGCTCAGCATCTGTCAACATTCACATCAAAGCCATCGTTTCTTGGACAACTTGACATGGAACACACAATTATTGAGGCTCAAAGTTATGACATATGCTTTGAGTACATCGAAGAAATGATCCATAAGCAGGAGCCTCTTGTAAATGTCCTACGGCTTCTCATCTTATTTTCTATTACAAATTCTGGGTTGCCTAAAAAGAATTTTGACTATTTGAGGAGAGAACTACTCCATAGTTATGGATTTGAACACATGGTTACATTGAATAGTTTAGAGAAAGCTGGATTGGTTAAAAAACAGGAGTCGAAAAGCAACTGGCTGACAGTTAAACGTGCCCTGCAACTTGTTGTTGAGGATACTGACACTGCAAATCCCAATGATATCGCCTATGTATTTTCTGGATATGCACCTCTTAGCATTCGCCTTGTCCAACATGCTGTTCGATCTGGATGGCGTCCAATTGAAGAAATTCTGAAGCTGTTACCTGGACCACATTCAGAAACAAAGAGAGGCAGATTCTCAAGCAGTCCATCATTGGACACTTTGCAGGGGCCTTCAGCCAATGTAGACAAGGTAGTTGATGGAAGGCGCTCCCTAGTACTTGTCGTCTTCATCGGAGGTGTAACGTTTGCGGAGATTTCTGCTCTACGATTTCTCAGTGCTCAGGAAGGGATGGCATATGATTTGATAATCGGGACTACGAAAATTGCCGGTGGCCGTACCTTCACTGAAACATTTGTGGGGAAGTAA

Protein Analysis

595

Amino Acids

66.91

Weight (kDa)

6.1

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 1602
AciI CCGC 5 cut(s) 135, 250, 419, 619, 1667
AclI AACGTT 1 cut(s) 1661
AclWI GGATC 3 cut(s) 116, 364, 1150
AcoI YGGCCR 2 cut(s) 898, 1750
AcsI RAATTY 4 cut(s) 1003, 1216, 1237, 1503
AcuI CTGAAG 2 cut(s) 1529, 1575
AcyI GRCGYC 1 cut(s) 1489
AfaI GTAC 5 cut(s) 390, 416, 1142, 1635, 1756
AfiI CCNNNNNNNGG 3 cut(s) 379, 817, 1165
AgsI TTSAA 8 cut(s) 188, 218, 461, 849, 982, 1283, 1300, 1499
AjnI CCWGG 2 cut(s) 486, 1519
AjuI GAANNNNNNNTTGG 4 cut(s) 1304, 1336, 1458, 1490
AleI CACNNNNGTG 1 cut(s) 947
Alw21I GWGCWC 1 cut(s) 1699
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 3 cut(s) 116, 364, 1150
AlwNI CAGNNNCTG 2 cut(s) 974, 1048
AoxI GGCC 3 cut(s) 898, 1586, 1750
ApoI RAATTY 4 cut(s) 1003, 1216, 1237, 1503
ArsI GACNNNNNNTTYG 2 cut(s) 1118, 1150
Asp700I GAANNNNTTC 2 cut(s) 744, 1503
AspLEI GCGC 1 cut(s) 1626
AspS9I GGNCC 2 cut(s) 1523, 1586
AsuHPI GGTGA 3 cut(s) 509, 571, 961
AsuII TTCGAA 1 cut(s) 888
AvaII GGWCC 1 cut(s) 1523
BaeGI GKGCMC 1 cut(s) 1372
BalI TGGCCA 1 cut(s) 900
BarI GAAGNNNNNNTAC 2 cut(s) 923, 955
BbsI GAAGAC 1 cut(s) 1636
Bbv12I GWGCWC 1 cut(s) 1699
BccI CCATC 6 cut(s) 488, 1078, 1479, 1573, 1610, 1702
BceAI ACGGC 2 cut(s) 1205, 1737
BcgI CGANNNNNNTGC 2 cut(s) 773, 807
BciT130I CCWGG 2 cut(s) 488, 1521
BciVI GTATCC 1 cut(s) 1384
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 1631
BfmI CTRYAG 2 cut(s) 314, 405
BfoI RGCGCY 1 cut(s) 1627
BfuI GTATCC 1 cut(s) 1384
BisI GCNGC 1 cut(s) 136
BlpI GCTNAGC 2 cut(s) 131, 1041
BlsI GCNGC 1 cut(s) 137
BmcAI AGTACT 1 cut(s) 1635
Bme1390I CCNGG 2 cut(s) 488, 1521
Bme18I GGWCC 1 cut(s) 1523
BmgT120I GGNCC 2 cut(s) 1523, 1586
BmiI GGNNCC 3 cut(s) 636, 1170, 1587
BmrFI CCNGG 2 cut(s) 488, 1521
BmsI GCATC 3 cut(s) 781, 803, 1054
BpiI GAAGAC 1 cut(s) 1636
BplI GAGNNNNNCTC 2 cut(s) 1248, 1280
Bpu10I CCTNAGC 1 cut(s) 1698
Bpu1102I GCTNAGC 2 cut(s) 131, 1041
Bpu14I TTCGAA 1 cut(s) 888
BpuEI CTTGAG 4 cut(s) 71, 395, 563, 1540
Bsa29I ATCGAT 2 cut(s) 120, 149
BsaAI YACGTR 1 cut(s) 875
BsaHI GRCGYC 1 cut(s) 1489
BsaJI CCNNGG 1 cut(s) 945
Bsc4I CCNNNNNNNGG 3 cut(s) 379, 817, 1165
Bse118I RCCGGY 2 cut(s) 348, 1745
Bse1I ACTGG 2 cut(s) 638, 1355
Bse3DI GCAATG 1 cut(s) 1007
BseBI CCWGG 2 cut(s) 488, 1521
BseCI ATCGAT 2 cut(s) 120, 149
BseDI CCNNGG 1 cut(s) 945
BseGI GGATG 5 cut(s) 81, 153, 451, 1490, 1713
BseLI CCNNNNNNNGG 3 cut(s) 379, 817, 1165
BseMI GCAATG 1 cut(s) 1007
BseMII CTCAG 7 cut(s) 20, 64, 77, 145, 1055, 1705, 1712
BseNI ACTGG 2 cut(s) 638, 1355
BseRI GAGGAG 3 cut(s) 21, 392, 1267
BseSI GKGCMC 1 cut(s) 1372
Bsh1285I CGRYCG 1 cut(s) 353
BshFI GGCC 3 cut(s) 900, 1588, 1752
BshVI ATCGAT 2 cut(s) 120, 149
BsiEI CGRYCG 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 1699
BsiSI CCGG 2 cut(s) 349, 1746
BslFI GGGAC 2 cut(s) 326, 1744
BslI CCNNNNNNNGG 3 cut(s) 379, 817, 1165
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 2 cut(s) 326, 1744
BsmI GAATGC 2 cut(s) 488, 1452
BsnI GGCC 3 cut(s) 900, 1588, 1752
Bsp119I TTCGAA 1 cut(s) 888
Bsp1286I GDGCHC 2 cut(s) 1372, 1699
Bsp143I GATC 7 cut(s) 121, 150, 369, 466, 877, 1155, 1478
Bsp1720I GCTNAGC 2 cut(s) 131, 1041
BspACI CCGC 5 cut(s) 135, 250, 419, 619, 1667
BspANI GGCC 3 cut(s) 900, 1588, 1752
BspCNI CTCAG 7 cut(s) 19, 63, 76, 144, 1054, 1704, 1711
BspDI ATCGAT 2 cut(s) 120, 149
BspLI GGNNCC 3 cut(s) 636, 1170, 1587
BspPI GGATC 3 cut(s) 116, 364, 1150
BspT104I TTCGAA 1 cut(s) 888
BsrBI CCGCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 1007
BsrFI RCCGGY 2 cut(s) 348, 1745
BsrI ACTGG 2 cut(s) 638, 1355
BssAI RCCGGY 2 cut(s) 348, 1745
BssECI CCNNGG 1 cut(s) 945
BssMI GATC 7 cut(s) 121, 150, 369, 466, 877, 1155, 1478
BssNI GRCGYC 1 cut(s) 1489
Bst2UI CCWGG 2 cut(s) 488, 1521
Bst4CI ACNGT 4 cut(s) 60, 227, 970, 1360
BstACI GRCGYC 1 cut(s) 1489
BstBAI YACGTR 1 cut(s) 875
BstBI TTCGAA 1 cut(s) 888
BstC8I GCNNGC 2 cut(s) 623, 627
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 5 cut(s) 81, 153, 451, 1490, 1713
BstH2I RGCGCY 1 cut(s) 1627
BstHHI GCGC 1 cut(s) 1626
BstKTI GATC 7 cut(s) 124, 153, 372, 469, 880, 1158, 1481
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 7 cut(s) 121, 150, 369, 466, 877, 1155, 1478
BstMCI CGRYCG 1 cut(s) 353
BstNI CCWGG 2 cut(s) 488, 1521
BstNSI RCATGY 3 cut(s) 290, 625, 1472
BstSCI CCNGG 2 cut(s) 486, 1519
BstSFI CTRYAG 2 cut(s) 314, 405
BstSLI GKGCMC 1 cut(s) 1372
BstV2I GAAGAC 1 cut(s) 1636
BstX2I RGATCY 1 cut(s) 369
BstXI CCANNNNNNTGG 1 cut(s) 1274
BstYI RGATCY 1 cut(s) 369
Bsu15I ATCGAT 2 cut(s) 120, 149
BsuI GTATCC 1 cut(s) 1384
BsuRI GGCC 3 cut(s) 900, 1588, 1752
BsuTUI ATCGAT 2 cut(s) 120, 149
BtsCI GGATG 5 cut(s) 81, 153, 451, 1490, 1713
BtsI GCAGTG 1 cut(s) 1398
BtsIMutI CAGTG 3 cut(s) 1398, 1699, 1761
Cac8I GCNNGC 2 cut(s) 623, 627
CaiI CAGNNNCTG 2 cut(s) 974, 1048
CfoI GCGC 1 cut(s) 1626
Cfr10I RCCGGY 2 cut(s) 348, 1745
Cfr13I GGNCC 2 cut(s) 1523, 1586
ClaI ATCGAT 2 cut(s) 120, 149
CseI GACGC 1 cut(s) 1478
Csp6I GTAC 5 cut(s) 389, 415, 1141, 1634, 1755
CviAII CATG 9 cut(s) 179, 287, 622, 706, 718, 802, 1093, 1288, 1469
CviQI GTAC 5 cut(s) 389, 415, 1141, 1634, 1755
DpnI GATC 7 cut(s) 123, 152, 371, 468, 879, 1157, 1480
DpnII GATC 7 cut(s) 121, 150, 369, 466, 877, 1155, 1478
DraI TTTAAA 1 cut(s) 865
EaeI YGGCCR 2 cut(s) 898, 1750
Eco32I GATATC 1 cut(s) 1417
Eco47I GGWCC 1 cut(s) 1523
Eco57I CTGAAG 2 cut(s) 1529, 1575
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 1586
EcoRI GAATTC 1 cut(s) 1003
EcoRII CCWGG 2 cut(s) 486, 1519
EcoRV GATATC 1 cut(s) 1417
EcoT22I ATGCAT 1 cut(s) 796
FaeI CATG 9 cut(s) 182, 290, 625, 709, 721, 805, 1096, 1291, 1472
FalI AAGNNNNNCTT 4 cut(s) 732, 764, 825, 857
FaqI GGGAC 2 cut(s) 326, 1744
FatI CATG 9 cut(s) 178, 286, 621, 705, 717, 801, 1092, 1287, 1468
FauI CCCGC 1 cut(s) 426
FauNDI CATATG 3 cut(s) 736, 1130, 1714
FblI GTMKAC 1 cut(s) 1602
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 5 cut(s) 68, 140, 458, 1497, 1720
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 1 cut(s) 1631
GlaI GCGC 1 cut(s) 1625
GluI GCNGC 1 cut(s) 136
HaeII RGCGCY 1 cut(s) 1627
HaeIII GGCC 3 cut(s) 900, 1588, 1752
HapII CCGG 2 cut(s) 349, 1746
HgaI GACGC 1 cut(s) 1478
HhaI GCGC 1 cut(s) 1626
Hin1I GRCGYC 1 cut(s) 1489
Hin1II CATG 9 cut(s) 182, 290, 625, 709, 721, 805, 1096, 1291, 1472
Hin6I GCGC 1 cut(s) 1624
HinP1I GCGC 1 cut(s) 1624
HincII GTYRAC 4 cut(s) 208, 402, 643, 1053
HindII GTYRAC 4 cut(s) 208, 402, 643, 1053
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 7 cut(s) 10, 214, 273, 807, 904, 1337, 1551
HpaI GTTAAC 1 cut(s) 643
HpaII CCGG 2 cut(s) 349, 1746
HphI GGTGA 3 cut(s) 509, 571, 961
Hpy166II GTNNAC 8 cut(s) 79, 208, 241, 402, 643, 703, 1053, 1603
Hpy188I TCNGA 8 cut(s) 9, 66, 126, 256, 976, 1509, 1534, 1652
Hpy188III TCNNGA 7 cut(s) 88, 157, 749, 1434, 1482, 1700, 1729
Hpy8I GTNNAC 8 cut(s) 79, 208, 241, 402, 643, 703, 1053, 1603
HpyAV CCTTC 6 cut(s) 61, 734, 1599, 1614, 1697, 1768
HpyCH4III ACNGT 4 cut(s) 60, 227, 970, 1360
HpyCH4IV ACGT 5 cut(s) 302, 874, 910, 1366, 1661
HpyCH4V TGCA 9 cut(s) 164, 524, 625, 763, 794, 1375, 1403, 1442, 1582
HpySE526I ACGT 5 cut(s) 302, 874, 910, 1366, 1661
Hsp92I GRCGYC 1 cut(s) 1489
Hsp92II CATG 9 cut(s) 182, 290, 625, 709, 721, 805, 1096, 1291, 1472
HspAI GCGC 1 cut(s) 1624
KspAI GTTAAC 1 cut(s) 643
Kzo9I GATC 7 cut(s) 121, 150, 369, 466, 877, 1155, 1478
LmnI GCTCC 4 cut(s) 34, 256, 1168, 1631
LweI GCATC 3 cut(s) 781, 803, 1054
MaeI CTAG 1 cut(s) 1631
MaeII ACGT 5 cut(s) 302, 874, 910, 1366, 1661
MaeIII GTNAC 5 cut(s) 709, 949, 1291, 1515, 1657
MalI GATC 7 cut(s) 123, 152, 371, 468, 879, 1157, 1480
MbiI CCGCTC 1 cut(s) 252
MboI GATC 7 cut(s) 121, 150, 369, 466, 877, 1155, 1478
MboII GAAGA 5 cut(s) 379, 838, 1160, 1511, 1636
MfeI CAATTG 2 cut(s) 728, 1494
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 2 cut(s) 1372, 1699
MlsI TGGCCA 1 cut(s) 900
MluNI TGGCCA 1 cut(s) 900
MlyI GAGTC 2 cut(s) 816, 1346
MmeI TCCRAC 2 cut(s) 835, 1489
Mox20I TGGCCA 1 cut(s) 900
Mph1103I ATGCAT 1 cut(s) 796
MroXI GAANNNNTTC 2 cut(s) 744, 1503
MscI TGGCCA 1 cut(s) 900
MseI TTAA 5 cut(s) 642, 843, 864, 1326, 1362
MslI CAYNNNNRTG 2 cut(s) 947, 1272
Msp20I TGGCCA 1 cut(s) 900
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 2 cut(s) 349, 1746
MspR9I CCNGG 2 cut(s) 488, 1521
MunI CAATTG 2 cut(s) 728, 1494
Mva1269I GAATGC 2 cut(s) 488, 1452
MvaI CCWGG 2 cut(s) 488, 1521
NdeI CATATG 3 cut(s) 736, 1130, 1714
NdeII GATC 7 cut(s) 121, 150, 369, 466, 877, 1155, 1478
NlaIII CATG 9 cut(s) 182, 290, 625, 709, 721, 805, 1096, 1291, 1472
NlaIV GGNNCC 3 cut(s) 636, 1170, 1587
NmuCI GTSAC 1 cut(s) 949
NsiI ATGCAT 1 cut(s) 796
NspI RCATGY 3 cut(s) 290, 625, 1472
NspV TTCGAA 1 cut(s) 888
OliI CACNNNNGTG 1 cut(s) 947
PaeI GCATGC 1 cut(s) 625
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PctI GAATGC 2 cut(s) 488, 1452
PdmI GAANNNNTTC 2 cut(s) 744, 1503
PfeI GAWTC 5 cut(s) 10, 214, 273, 904, 1551
PflFI GACNNNGTC 1 cut(s) 989
PkrI GCNGC 1 cut(s) 137
PleI GAGTC 2 cut(s) 815, 1345
PpsI GAGTC 2 cut(s) 815, 1345
Ppu21I YACGTR 1 cut(s) 875
Psp1406I AACGTT 1 cut(s) 1661
Psp6I CCWGG 2 cut(s) 486, 1519
PspGI CCWGG 2 cut(s) 486, 1519
PspN4I GGNNCC 3 cut(s) 636, 1170, 1587
PspPI GGNCC 2 cut(s) 1523, 1586
PstNI CAGNNNCTG 2 cut(s) 974, 1048
PsuI RGATCY 1 cut(s) 369
PsyI GACNNNGTC 1 cut(s) 989
RsaI GTAC 5 cut(s) 390, 416, 1142, 1635, 1756
RsaNI GTAC 5 cut(s) 389, 415, 1141, 1634, 1755
RseI CAYNNNNRTG 2 cut(s) 947, 1272
SaqAI TTAA 5 cut(s) 642, 843, 864, 1326, 1362
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 7 cut(s) 121, 150, 369, 466, 877, 1155, 1478
Sau96I GGNCC 2 cut(s) 1523, 1586
ScaI AGTACT 1 cut(s) 1635
SchI GAGTC 2 cut(s) 816, 1346
ScrFI CCNGG 2 cut(s) 488, 1521
SduI GDGCHC 2 cut(s) 1372, 1699
SfaNI GCATC 3 cut(s) 781, 803, 1054
SfcI CTRYAG 2 cut(s) 314, 405
SfuI TTCGAA 1 cut(s) 888
SinI GGWCC 1 cut(s) 1523
SmiMI CAYNNNNRTG 2 cut(s) 947, 1272
SmlI CTYRAG 4 cut(s) 86, 374, 542, 1555
SmoI CTYRAG 4 cut(s) 86, 374, 542, 1555
SphI GCATGC 1 cut(s) 625
SsiI CCGC 5 cut(s) 135, 250, 419, 619, 1667
SspI AATATT 1 cut(s) 94
SspMI CTAG 1 cut(s) 1631
StyD4I CCNGG 2 cut(s) 486, 1519
TaaI ACNGT 4 cut(s) 60, 227, 970, 1360
TaiI ACGT 5 cut(s) 305, 877, 913, 1369, 1664
TaqI TCGA 8 cut(s) 97, 120, 149, 783, 888, 1146, 1340, 1477
TatI WGTACW 3 cut(s) 388, 1140, 1633
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 5 cut(s) 10, 214, 273, 904, 1551
Tru1I TTAA 5 cut(s) 642, 843, 864, 1326, 1362
Tru9I TTAA 5 cut(s) 642, 843, 864, 1326, 1362
TscAI CASTG 3 cut(s) 1405, 1699, 1768
TseFI GTSAC 1 cut(s) 949
Tsp45I GTSAC 1 cut(s) 949
TspDTI ATGAA 6 cut(s) 265, 281, 753, 944, 996, 1636
TspRI CASTG 3 cut(s) 1405, 1699, 1768
Tth111I GACNNNGTC 1 cut(s) 989
VpaK11BI GGWCC 1 cut(s) 1523
XagI CCTNNNNNAGG 1 cut(s) 377
XapI RAATTY 4 cut(s) 1003, 1216, 1237, 1503
XceI RCATGY 3 cut(s) 290, 625, 1472
XmiI GTMKAC 1 cut(s) 1602
XmnI GAANNNNTTC 2 cut(s) 744, 1503
XspI CTAG 1 cut(s) 1631
ZrmI AGTACT 1 cut(s) 1635
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.