Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Reverse (-)

62387927 .. 62388292

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21277

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAATACATTAGTTCACAAGTCCATAATGATACTTCGAAAGGGTTACAGAGAGAATACTATCTTTACTTTGTCCCTTGCTGCGCAGTTGCTTGTGAGAATATCCTTGAGGAGGAAAAAGTCCATGACTTGTTGAGTATAGGGGAGTACCAGCTATGCAGTGTTCCATTGGATGAGGATGTTTTGTCATTTGAACTTGATCTCTCTCTCAAGGAATGCCTTGTTGATGGTGATATGAGCTCACTTTGGCATATTGCGAAAGCCATTCACAAGCTTGAGTTTTCTTTTGGGGTGATACCAAATGTGAGGGCGAAAGGAAATGCATCGGTGTGTGTTGCTGACATTCTAAACCGCATGCAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

121

Amino Acids

13.61

Weight (kDa)

4.81

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	4 - 117	4.7e-14	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	85
AciI	CCGC	1 cut(s)	352
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	194
AluBI	AGCT	4 cut(s)	154, 240, 274, 362
AluI	AGCT	4 cut(s)	154, 240, 274, 362
Alw21I	GWGCWC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	242, 304
AsuII	TTCGAA	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
BmsI	GCATC	1 cut(s)	332
Bpu14I	TTCGAA	1 cut(s)	38
BpuEI	CTTGAG	3 cut(s)	128, 194, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	178, 184
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	352
BspT104I	TTCGAA	1 cut(s)	38
BssMI	GATC	1 cut(s)	199
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	356, 360
BstDEI	CTNAG	1 cut(s)	363
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	178, 184
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	178, 184
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	356, 360
CfoI	GCGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	2 cut(s)	125, 355
CviJI	RGCY	5 cut(s)	154, 240, 263, 274, 362
CviKI_1	RGCY	5 cut(s)	154, 240, 263, 274, 362
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	242
FaeI	CATG	2 cut(s)	128, 358
FaiI	YATR	7 cut(s)	27, 126, 140, 157, 236, 252, 356
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	2 cut(s)	124, 354
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	2 cut(s)	185, 191
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	82
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	128, 358
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	2 cut(s)	272, 360
HphI	GGTGA	2 cut(s)	242, 304
Hpy166II	GTNNAC	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	159, 323, 358
HpyF3I	CTNAG	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	128, 358
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	1 cut(s)	164
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	242
MnlI	CCTC	4 cut(s)	103, 106, 169, 300
Mph1103I	ATGCAT	1 cut(s)	325
MslI	CAYNNNNRTG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	221
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	128, 358
NsbI	TGCGCA	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	358
NspV	TTCGAA	1 cut(s)	38
PaeI	GCATGC	1 cut(s)	358
PctI	GAATGC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	242
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	4 cut(s)	156, 242, 276, 364
SfaNI	GCATC	1 cut(s)	332
SfuI	TTCGAA	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	328
SmlI	CTYRAG	3 cut(s)	107, 209, 275
SmoI	CTYRAG	3 cut(s)	107, 209, 275
SphI	GCATGC	1 cut(s)	358
SsiI	CCGC	1 cut(s)	352
SstI	GAGCTC	1 cut(s)	242
TaqI	TCGA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	110
XceI	RCATGY	1 cut(s)	358
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.