Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Reverse (-)

57855583 .. 57857397

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGCCCAGATTCCCAAGTTGGACAATGCTCCTCTAAATCTCAAATATATGAGGGAACAGTCTCAGAAGGAGCTCATAAACATCCTTAAGAATATTCGAGGAAGGAAGTGTTTGGTGATTGACCCCAAGCTCAGTGGTTCAATATCATTGATCATTCAGACTGCACTTCTCAAAGAACTTGAGGTTGAACTGCGACATCTTTCGGCTGAAACAATTCAAACTGACTGTTCCAAAGTGGTTATCCTTGTCCGTTCTCAGCTTAGTTTGATGAAATACATTAGTTCACAAGTCCAAAATGATACTTCGAAAGGGTTACAGAGAGAATACTATCTTTACTTTATCCTTGAGGAGGAAAAAGTCCATGACTTGTTGAGTATAGGGGAGTACCAGCTATACAGTGTTCCATTGGATGAGGATGAATGCCTTGTTGATGGTGATATGAGCTCACTTTGGCATATTGCGAAAGCCATTCACAAGCTTGAGGCGAAAGGAAATGCATCGGTGCGTGTTGCTGACATTCTAAACGGCATGCAAGCTGAGGAACCCGTTAGCTCATCAGATACGGTGGACATGGTTACTCCCATGTGTACTCAGTTAACATATGAGGGCATTATTGATGAGTTTCTGCGTATCAATGATGGTTCTGTTGAGGTTGATCCATCCATCATGGATGTCAAACAAGAAGAAAAGAAGATGAAATTGAAAGTTCCACTTAATTCAAGAGACAAGCTGTTTAAAGAGATAAGAGATCTCCACTTTGAAGTTGTTGTGACTTCAAATACACAGACTCTTTCCGAAATAAAGAATTTTGTCAAAAAGATGCACTCATTGCCAGAAGTGACAAGGCACATAAATCTTGCTAAGCATCTGATGAATTTCACGTCGAAGCCATCATTTCGTGGACTACTTGACGTGGAACAAACAATCGTTGAGACTGAGACCTCTTGTAGTGTCCTACGTCTTCTCATCTTATTTTCTATTACAAATTCTGGGTTGCCCAAAGAGAATTTTGACTATATGAGGAATGAACTACTCCAGAGTAATGGATTTGAGCACATGGCTACATTGAAAAATCTGGAGAAGCGGCTGAGAGTTAAGCGTGCCTTACAACTTGTCATTGAACACAGTGACACAGCAAATTCCAATGGCATTGACTATGTCTTTTCTGGATATGCACCTCTTAGCATTCGCCTTGTTCAGCATGCTATTCAATCTGGATGGCGTCCGATTGAAGAAACTCTAAAGCTGTTACCCGGACCACATTCAGAAACAAAAAGAGGCCCGTTCTCAAGCAGCGCATCATTTGACAATTTTCAGGGGCGCTCCCTTGAACTTGTCATCTTCATTGGAGGTGTAACGTTTGCAGAGATTTCCGCCGTTCGGTTTCTTATTGGGACAACGAAAATGGTTAGTGGCCATAGCTTGACTGAAACATTTGTGGGGAAGATGGAGGACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

486

Amino Acids

54.96

Weight (kDa)

5.96

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	36 - 143	1.2e-08	Sec1 family
Sec1	PF00995	188 - 474	2.4e-44	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	1084, 1374
AclI	AACGTT	1 cut(s)	1358
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	1414
AcsI	RAATTY	5 cut(s)	805, 874, 985, 1006, 1138
AcyI	GRCGYC	1 cut(s)	1222
AfaI	GTAC	2 cut(s)	386, 589
AfiI	CCNNNNNNNGG	2 cut(s)	349, 1380
AflII	CTTAAG	1 cut(s)	86
AjiI	CACGTC	2 cut(s)	882, 913
Alw21I	GWGCWC	3 cut(s)	75, 446, 1056
Alw26I	GTCTC	4 cut(s)	66, 717, 926, 932
AlwI	GGATC	1 cut(s)	650
AoxI	GGCC	3 cut(s)	3, 1279, 1414
ApeKI	GCWGC	1 cut(s)	1293
ApoI	RAATTY	5 cut(s)	805, 874, 985, 1006, 1138
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	1298, 1323
AspS9I	GGNCC	4 cut(s)	4, 1256, 1280, 1453
AsuC2I	CCSGG	1 cut(s)	1254
AsuHPI	GGTGA	2 cut(s)	127, 446
AsuII	TTCGAA	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	1256, 1453
BalI	TGGCCA	1 cut(s)	1416
BanII	GRGCYC	2 cut(s)	75, 446
BbsI	GAAGAC	1 cut(s)	953
Bbv12I	GWGCWC	3 cut(s)	75, 446, 1056
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	1305
BccI	CCATC	7 cut(s)	425, 632, 667, 671, 898, 1212, 1441
BceAI	ACGGC	2 cut(s)	541, 1361
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	1254
BcoDI	GTCTC	4 cut(s)	66, 717, 926, 932
BfoI	RGCGCY	1 cut(s)	1324
BfrI	CTTAAG	1 cut(s)	86
BglII	AGATCT	1 cut(s)	748
BisI	GCNGC	2 cut(s)	1085, 1294
BlpI	GCTNAGC	1 cut(s)	861
BlsI	GCNGC	2 cut(s)	1086, 1295
Bme1390I	CCNGG	1 cut(s)	1254
Bme18I	GGWCC	2 cut(s)	1256, 1453
BmgBI	CACGTC	2 cut(s)	882, 913
BmgT120I	GGNCC	4 cut(s)	4, 1256, 1280, 1453
BmiI	GGNNCC	1 cut(s)	543
BmrFI	CCNGG	1 cut(s)	1254
BmsI	GCATC	4 cut(s)	506, 810, 874, 1307
BpiI	GAAGAC	1 cut(s)	953
BpmI	CTGGAG	2 cut(s)	1019, 1097
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu1102I	GCTNAGC	1 cut(s)	861
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	4 cut(s)	200, 365, 500, 1273
BpuMI	CCSGG	1 cut(s)	1254
BsaHI	GRCGYC	1 cut(s)	1222
BsaI	GGTCTC	1 cut(s)	932
BsaXI	ACNNNNNCTCC	1 cut(s)	1442
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 1380
Bse3DI	GCAATG	1 cut(s)	827
BseGI	GGATG	6 cut(s)	81, 415, 421, 659, 676, 1223
BseLI	CCNNNNNNNGG	2 cut(s)	349, 1380
BseMI	GCAATG	1 cut(s)	827
BseMII	CTCAG	7 cut(s)	77, 145, 269, 528, 605, 927, 1079
BseRI	GAGGAG	2 cut(s)	21, 362
BseXI	GCAGC	1 cut(s)	1305
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	5, 1281, 1416
BsiHKAI	GWGCWC	3 cut(s)	75, 446, 1056
BsiSI	CCGG	1 cut(s)	1254
BslFI	GGGAC	1 cut(s)	1408
BslI	CCNNNNNNNGG	2 cut(s)	349, 1380
BsmAI	GTCTC	4 cut(s)	66, 717, 926, 932
BsmFI	GGGAC	1 cut(s)	1408
BsmI	GAATGC	2 cut(s)	425, 1185
BsnI	GGCC	3 cut(s)	5, 1281, 1416
Bso31I	GGTCTC	1 cut(s)	932
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	3 cut(s)	75, 446, 1056
Bsp143I	GATC	3 cut(s)	150, 655, 748
Bsp1720I	GCTNAGC	1 cut(s)	861
BspACI	CCGC	2 cut(s)	1084, 1374
BspANI	GGCC	3 cut(s)	5, 1281, 1416
BspCNI	CTCAG	7 cut(s)	76, 144, 268, 529, 604, 928, 1080
BspLI	GGNNCC	1 cut(s)	543
BspPI	GGATC	1 cut(s)	650
BspT104I	TTCGAA	1 cut(s)	305
BspTI	CTTAAG	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	932
BsrDI	GCAATG	1 cut(s)	827
BssMI	GATC	3 cut(s)	150, 655, 748
BssNI	GRCGYC	1 cut(s)	1222
Bst4CI	ACNGT	5 cut(s)	60, 227, 398, 565, 1127
BstACI	GRCGYC	1 cut(s)	1222
BstAFI	CTTAAG	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	829
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	4 cut(s)	530, 534, 1101, 1203
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstF5I	GGATG	6 cut(s)	81, 415, 421, 659, 676, 1223
BstH2I	RGCGCY	1 cut(s)	1324
BstHHI	GCGC	2 cut(s)	1298, 1323
BstKTI	GATC	3 cut(s)	153, 658, 751
BstMAI	GTCTC	4 cut(s)	66, 717, 926, 932
BstMBI	GATC	3 cut(s)	150, 655, 748
BstMWI	GCNNNNNNNGC	1 cut(s)	829
BstNSI	RCATGY	2 cut(s)	532, 1205
BstSCI	CCNGG	1 cut(s)	1252
BstV1I	GCAGC	1 cut(s)	1305
BstV2I	GAAGAC	1 cut(s)	953
BstX2I	RGATCY	1 cut(s)	748
BstXI	CCANNNNNNTGG	1 cut(s)	1043
BstYI	RGATCY	1 cut(s)	748
BsuRI	GGCC	3 cut(s)	5, 1281, 1416
BtrI	CACGTC	2 cut(s)	882, 913
BtsCI	GGATG	6 cut(s)	81, 415, 421, 659, 676, 1223
BtsIMutI	CAGTG	3 cut(s)	139, 403, 1132
Cac8I	GCNNGC	4 cut(s)	530, 534, 1101, 1203
CfoI	GCGC	2 cut(s)	1298, 1323
Cfr13I	GGNCC	4 cut(s)	4, 1256, 1280, 1453
CseI	GACGC	1 cut(s)	1211
Csp6I	GTAC	2 cut(s)	385, 588
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	7 cut(s)	362, 529, 571, 583, 667, 1057, 1202
CviQI	GTAC	2 cut(s)	385, 588
DpnI	GATC	3 cut(s)	152, 657, 750
DpnII	GATC	3 cut(s)	150, 655, 748
DraI	TTTAAA	1 cut(s)	736
EaeI	YGGCCR	1 cut(s)	1414
EciI	GGCGGA	1 cut(s)	1363
Ecl136II	GAGCTC	2 cut(s)	73, 444
Eco24I	GRGCYC	2 cut(s)	75, 446
Eco31I	GGTCTC	1 cut(s)	932
Eco47I	GGWCC	2 cut(s)	1256, 1453
Eco53kI	GAGCTC	2 cut(s)	73, 444
EcoICRI	GAGCTC	2 cut(s)	73, 444
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	1453
EcoT22I	ATGCAT	1 cut(s)	499
EcoT38I	GRGCYC	2 cut(s)	75, 446
FaeI	CATG	7 cut(s)	365, 532, 574, 586, 670, 1060, 1205
FalI	AAGNNNNNCTT	4 cut(s)	696, 728, 1088, 1120
FaqI	GGGAC	1 cut(s)	1408
FatI	CATG	7 cut(s)	361, 528, 570, 582, 666, 1056, 1201
FauNDI	CATATG	1 cut(s)	601
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	1085, 1294
FokI	GGATG	6 cut(s)	68, 422, 428, 646, 683, 1230
FriOI	GRGCYC	2 cut(s)	75, 446
Fsp4HI	GCNGC	2 cut(s)	1085, 1294
GlaI	GCGC	2 cut(s)	1297, 1322
GluI	GCNGC	2 cut(s)	1085, 1294
GsuI	CTGGAG	2 cut(s)	1019, 1097
HaeII	RGCGCY	1 cut(s)	1324
HaeIII	GGCC	3 cut(s)	5, 1281, 1416
HapII	CCGG	1 cut(s)	1254
HgaI	GACGC	1 cut(s)	1211
HhaI	GCGC	2 cut(s)	1298, 1323
Hin1I	GRCGYC	1 cut(s)	1222
Hin1II	CATG	7 cut(s)	365, 532, 574, 586, 670, 1060, 1205
Hin6I	GCGC	2 cut(s)	1296, 1321
HinP1I	GCGC	2 cut(s)	1296, 1321
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	2 cut(s)	10, 787
HpaI	GTTAAC	1 cut(s)	597
HpaII	CCGG	1 cut(s)	1254
HphI	GGTGA	2 cut(s)	127, 446
Hpy166II	GTNNAC	5 cut(s)	284, 568, 588, 597, 902
Hpy188I	TCNGA	7 cut(s)	66, 159, 559, 796, 870, 1227, 1267
Hpy188III	TCNNGA	5 cut(s)	720, 1036, 1076, 1167, 1215
Hpy8I	GTNNAC	5 cut(s)	284, 568, 588, 597, 902
Hpy99I	CGWCG	1 cut(s)	886
HpyAV	CCTTC	2 cut(s)	61, 96
HpyCH4III	ACNGT	5 cut(s)	60, 227, 398, 565, 1127
HpyCH4IV	ACGT	4 cut(s)	881, 912, 958, 1358
HpyCH4V	TGCA	6 cut(s)	164, 497, 532, 823, 1175, 1364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	829
HpySE526I	ACGT	4 cut(s)	881, 912, 958, 1358
Hsp92I	GRCGYC	1 cut(s)	1222
Hsp92II	CATG	7 cut(s)	365, 532, 574, 586, 670, 1060, 1205
HspAI	GCGC	2 cut(s)	1296, 1321
Ksp22I	TGATCA	1 cut(s)	150
KspAI	GTTAAC	1 cut(s)	597
Kzo9I	GATC	3 cut(s)	150, 655, 748
LmnI	GCTCC	3 cut(s)	34, 70, 1328
Lsp1109I	GCAGC	1 cut(s)	1305
LweI	GCATC	4 cut(s)	506, 810, 874, 1307
MaeII	ACGT	4 cut(s)	881, 912, 958, 1358
MaeIII	GTNAC	7 cut(s)	312, 574, 769, 838, 1127, 1248, 1354
MalI	GATC	3 cut(s)	152, 657, 750
MboI	GATC	3 cut(s)	150, 655, 748
MboII	GAAGA	6 cut(s)	695, 703, 953, 1244, 1333, 1456
MflI	RGATCY	1 cut(s)	748
MhlI	GDGCHC	3 cut(s)	75, 446, 1056
MlsI	TGGCCA	1 cut(s)	1416
MluCI	AATT	9 cut(s)	213, 698, 715, 805, 874, 985, 1006, 1138, 1309
MluNI	TGGCCA	1 cut(s)	1416
MlyI	GAGTC	1 cut(s)	781
Mox20I	TGGCCA	1 cut(s)	1416
Mph1103I	ATGCAT	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	1416
MseI	TTAA	5 cut(s)	87, 596, 714, 735, 1095
Msp20I	TGGCCA	1 cut(s)	1416
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	1 cut(s)	1254
MspR9I	CCNGG	1 cut(s)	1254
Mva1269I	GAATGC	2 cut(s)	425, 1185
MwoI	GCNNNNNNNGC	1 cut(s)	829
NciI	CCSGG	1 cut(s)	1254
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	3 cut(s)	150, 655, 748
NlaIII	CATG	7 cut(s)	365, 532, 574, 586, 670, 1060, 1205
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	3 cut(s)	769, 838, 1127
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	2 cut(s)	532, 1205
NspV	TTCGAA	1 cut(s)	305
PaeI	GCATGC	2 cut(s)	532, 1205
PctI	GAATGC	2 cut(s)	425, 1185
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	10
PflFI	GACNNNGTC	1 cut(s)	1157
PkrI	GCNGC	2 cut(s)	1086, 1295
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
PpuMI	RGGWCCY	1 cut(s)	1453
Psp124BI	GAGCTC	2 cut(s)	75, 446
Psp1406I	AACGTT	1 cut(s)	1358
Psp5II	RGGWCCY	1 cut(s)	1453
PspN4I	GGNNCC	1 cut(s)	543
PspPI	GGNCC	4 cut(s)	4, 1256, 1280, 1453
PspPPI	RGGWCCY	1 cut(s)	1453
PsuI	RGATCY	1 cut(s)	748
PsyI	GACNNNGTC	1 cut(s)	1157
RsaI	GTAC	2 cut(s)	386, 589
RsaNI	GTAC	2 cut(s)	385, 588
SacI	GAGCTC	2 cut(s)	75, 446
SaqAI	TTAA	5 cut(s)	87, 596, 714, 735, 1095
SatI	GCNGC	2 cut(s)	1085, 1294
Sau3AI	GATC	3 cut(s)	150, 655, 748
Sau96I	GGNCC	4 cut(s)	4, 1256, 1280, 1453
SchI	GAGTC	1 cut(s)	781
ScrFI	CCNGG	1 cut(s)	1254
SduI	GDGCHC	3 cut(s)	75, 446, 1056
SfaNI	GCATC	4 cut(s)	506, 810, 874, 1307
SfuI	TTCGAA	1 cut(s)	305
SinI	GGWCC	2 cut(s)	1256, 1453
SmlI	CTYRAG	5 cut(s)	86, 179, 344, 479, 1288
SmoI	CTYRAG	5 cut(s)	86, 179, 344, 479, 1288
SphI	GCATGC	2 cut(s)	532, 1205
Sse9I	AATT	9 cut(s)	213, 698, 715, 805, 874, 985, 1006, 1138, 1309
SsiI	CCGC	2 cut(s)	1084, 1374
SspI	AATATT	1 cut(s)	94
SstI	GAGCTC	2 cut(s)	75, 446
StyD4I	CCNGG	1 cut(s)	1252
TaaI	ACNGT	5 cut(s)	60, 227, 398, 565, 1127
TaiI	ACGT	4 cut(s)	884, 915, 961, 1361
TaqI	TCGA	3 cut(s)	97, 305, 884
TasI	AATT	9 cut(s)	213, 698, 715, 805, 874, 985, 1006, 1138, 1309
TatI	WGTACW	1 cut(s)	587
TauI	GCSGC	1 cut(s)	1087
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	5 cut(s)	87, 596, 714, 735, 1095
Tru9I	TTAA	5 cut(s)	87, 596, 714, 735, 1095
TscAI	CASTG	3 cut(s)	139, 403, 1132
TseFI	GTSAC	3 cut(s)	769, 838, 1127
TseI	GCWGC	1 cut(s)	1293
Tsp45I	GTSAC	3 cut(s)	769, 838, 1127
TspDTI	ATGAA	6 cut(s)	284, 432, 710, 887, 1041, 1333
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	3 cut(s)	139, 403, 1132
Tth111I	GACNNNGTC	1 cut(s)	1157
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	1256, 1453
XagI	CCTNNNNNAGG	1 cut(s)	347
XapI	RAATTY	5 cut(s)	805, 874, 985, 1006, 1138
XceI	RCATGY	2 cut(s)	532, 1205
XmnI	GAANNNNTTC	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.