Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Reverse (-)

64136429 .. 64146355

Gene Structure 9927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG477600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCAAGCTGAGGAACCCGTTAGCTCATCAGATATGGTTGTTCCAGAGATAAATACTGTCATCCTTCTAGACAGGGAGGTGGACATGGTTACTCCCATGTGTACTCAGTTAACATATGAGGGCATTATTGATGAGTTTCTGCGTATCAATGATGGTTCTGTTGAGGTTGATCCATCCATCATGGATGTCAAACAAGAAGGAAAGAATATGAAAATTCCACTTAATTCAAGTGACAAGCTGTTTAAAGAGATAAGAGGTCTACACTTTGAAGTTGTTGTCCAGATTCTACGCCAAAAAGTAACATCTATGAAGCAGGACTACAATGAGGGGGCAGAAACCAATGTAGACAAGGTAGCTGATGGGAAGCGCTCCCTTGTACTTGTCATCTTCATTGGAGGTGTAACGTTTGCAGAGATTTCCGCCCTTCGGTTTCTTAGTTCTCGGGAAGGGATGGCATATGATTTCATAGTTGGGACAACGAAAATGGTTAGTGGCCATAGCTTGACTGAAACATTTGTGGGGAAGACGGAGGACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

179

Amino Acids

19.93

Weight (kDa)

4.63

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	19 - 112	8.9e-24	Sec1 family
Sec1	PF00995	119 - 169	2.8e-11	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	259, 345
AciI	CCGC	1 cut(s)	420
AclI	AACGTT	1 cut(s)	404
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	2 cut(s)	103, 378
AfeI	AGCGCT	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	426
AgsI	TTSAA	2 cut(s)	228, 269
AluBI	AGCT	5 cut(s)	8, 24, 238, 356, 501
AluI	AGCT	5 cut(s)	8, 24, 238, 356, 501
AlwI	GGATC	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	441
Aor51HI	AGCGCT	1 cut(s)	368
AoxI	GGCC	1 cut(s)	493
ApoI	RAATTY	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	441
AvaII	GGWCC	1 cut(s)	532
BalI	TGGCCA	1 cut(s)	495
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
BbsI	GAAGAC	1 cut(s)	530
BbvCI	CCTCAGC	1 cut(s)	9
BccI	CCATC	5 cut(s)	146, 181, 185, 353, 445
BfaI	CTAG	1 cut(s)	68
BfoI	RGCGCY	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	532
BmeT110I	CYCGRG	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	532
BmiI	GGNNCC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	530
Bpu10I	CCTNAGC	1 cut(s)	9
BsaXI	ACNNNNNCTCC	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	1 cut(s)	426
BseGI	GGATG	4 cut(s)	60, 173, 190, 456
BseLI	CCNNNNNNNGG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	1 cut(s)	495
BsoBI	CYCGRG	1 cut(s)	441
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	164
BssMI	GATC	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	9, 105, 434
BstF5I	GGATG	4 cut(s)	60, 173, 190, 456
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	530
BsuRI	GGCC	1 cut(s)	495
BtsCI	GGATG	4 cut(s)	60, 173, 190, 456
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	532
Csp6I	GTAC	2 cut(s)	102, 377
CviAII	CATG	3 cut(s)	85, 97, 181
CviJI	RGCY	6 cut(s)	8, 24, 238, 356, 495, 501
CviKI_1	RGCY	6 cut(s)	8, 24, 238, 356, 495, 501
CviQI	GTAC	2 cut(s)	102, 377
DdeI	CTNAG	3 cut(s)	9, 105, 434
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DraI	TTTAAA	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	493
EciI	GGCGGA	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	532
Eco47III	AGCGCT	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	532
FaeI	CATG	3 cut(s)	88, 100, 184
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	3 cut(s)	84, 96, 180
FauNDI	CATATG	2 cut(s)	115, 457
FblI	GTMKAC	2 cut(s)	259, 345
FokI	GGATG	4 cut(s)	47, 160, 197, 463
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	495
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	3 cut(s)	88, 100, 184
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	283
HpaI	GTTAAC	1 cut(s)	111
Hpy166II	GTNNAC	5 cut(s)	82, 102, 111, 260, 346
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	4 cut(s)	44, 68, 280, 443
Hpy8I	GTNNAC	5 cut(s)	82, 102, 111, 260, 346
HpyAV	CCTTC	4 cut(s)	74, 191, 434, 440
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	2 cut(s)	4, 410
HpyF3I	CTNAG	3 cut(s)	9, 105, 434
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	3 cut(s)	88, 100, 184
HspAI	GCGC	1 cut(s)	367
KspAI	GTTAAC	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	374
LpnPI	CCDG	4 cut(s)	57, 58, 293, 299
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	4 cut(s)	88, 230, 298, 400
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	379, 535
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	2 cut(s)	213, 223
MluNI	TGGCCA	1 cut(s)	495
MnlI	CCTC	8 cut(s)	4, 70, 112, 157, 248, 319, 389, 523
Mox20I	TGGCCA	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	3 cut(s)	110, 222, 243
Msp20I	TGGCCA	1 cut(s)	495
NdeI	CATATG	2 cut(s)	115, 457
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	3 cut(s)	88, 100, 184
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	283
PpuMI	RGGWCCY	1 cut(s)	532
Psp1406I	AACGTT	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	532
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	532
PspPPI	RGGWCCY	1 cut(s)	532
RsaI	GTAC	2 cut(s)	103, 378
RsaNI	GTAC	2 cut(s)	102, 377
SaqAI	TTAA	3 cut(s)	110, 222, 243
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	1 cut(s)	532
SinI	GGWCC	1 cut(s)	532
Sse9I	AATT	2 cut(s)	213, 223
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	407
TasI	AATT	2 cut(s)	213, 223
TatI	WGTACW	2 cut(s)	101, 376
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	3 cut(s)	110, 222, 243
Tru9I	TTAA	3 cut(s)	110, 222, 243
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	4 cut(s)	224, 323, 379, 454
VpaK11BI	GGWCC	1 cut(s)	532
XapI	RAATTY	1 cut(s)	213
XbaI	TCTAGA	1 cut(s)	67
XmiI	GTMKAC	2 cut(s)	259, 345
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.