Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Reverse (-)

63286227 .. 63287107

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG460300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAAGCAGGACTACAATGAGGTGACTTCAAATACACAGACTCTTTCCGAAATAAAGAATTTGTTCAAAAAGATGCACTCATTGCCAGAAGTGACAAGGCACATAAATCTTGCTAAGCATCTGATGACTTTCACGTCGAAGATATCATTTCGTGGACTACTTGACGTGGAACAAACAATCGTTGAGACTGAGAGTTTTGACATATGCTTAGATTACATTGAAGAAATGATGCATAAGCAGGAGCCTCTTGGGGCAGAAACCAATGTAGACAAGGTAGATGATGGGAAGCGCTCCCTTGTACTTGTCATCTTCATTAGAGGTGTAACGTTTGCAGAGATTTCCGCCCTTCGGTTTCTTAGTTCTCGGAAAGGGATGGCATATAATTTCATAGTTGGGACAACGAAAATGGTTAGTGGCCATAGCTTGACAGAAACATTTGTGGGGAAGATGGAGGACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

153

Amino Acids

17.43

Weight (kDa)

5.95

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	2 - 83	2e-08	Sec1 family
Sec1	PF00995	93 - 143	2.3e-08	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	342
AclI	AACGTT	1 cut(s)	326
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	58
AfaI	GTAC	1 cut(s)	300
AfeI	AGCGCT	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	30, 67, 221
AjiI	CACGTC	2 cut(s)	135, 166
AluBI	AGCT	1 cut(s)	423
AluI	AGCT	1 cut(s)	423
Alw26I	GTCTC	1 cut(s)	179
Aor51HI	AGCGCT	1 cut(s)	290
AoxI	GGCC	1 cut(s)	415
ApoI	RAATTY	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	417
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BccI	CCATC	3 cut(s)	275, 367, 442
BcoDI	GTCTC	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	292
BlpI	GCTNAGC	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	454
BmgBI	CACGTC	2 cut(s)	135, 166
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	243
BmsI	GCATC	3 cut(s)	63, 127, 219
Bpu1102I	GCTNAGC	1 cut(s)	114
BsaXI	ACNNNNNCTCC	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	417
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstDEI	CTNAG	4 cut(s)	114, 189, 208, 356
BstF5I	GGATG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	291
BstMAI	GTCTC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	417
BtrI	CACGTC	2 cut(s)	135, 166
BtsCI	GGATG	1 cut(s)	378
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	299
CviJI	RGCY	3 cut(s)	244, 417, 423
CviKI_1	RGCY	3 cut(s)	244, 417, 423
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	4 cut(s)	114, 189, 208, 356
DrdI	GACNNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	415
EciI	GGCGGA	1 cut(s)	331
Eco32I	GATATC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	454
Eco47III	AGCGCT	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	234
FaiI	YATR	8 cut(s)	104, 203, 205, 234, 379, 381, 389, 420
FaqI	GGGAC	1 cut(s)	409
FauNDI	CATATG	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	267
FokI	GGATG	1 cut(s)	385
GlaI	GCGC	1 cut(s)	290
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	417
HhaI	GCGC	1 cut(s)	291
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	1 cut(s)	40
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	155, 268
Hpy188I	TCNGA	3 cut(s)	49, 123, 366
Hpy8I	GTNNAC	2 cut(s)	155, 268
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	356
HpyCH4IV	ACGT	3 cut(s)	134, 165, 326
HpyCH4V	TGCA	3 cut(s)	76, 232, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	4 cut(s)	114, 189, 208, 356
HpySE526I	ACGT	3 cut(s)	134, 165, 326
HspAI	GCGC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	241, 296
LpnPI	CCDG	2 cut(s)	99, 224
LweI	GCATC	3 cut(s)	63, 127, 219
MaeII	ACGT	3 cut(s)	134, 165, 326
MaeIII	GTNAC	3 cut(s)	22, 91, 322
MboII	GAAGA	4 cut(s)	151, 233, 301, 457
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	2 cut(s)	58, 382
MluNI	TGGCCA	1 cut(s)	417
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	4 cut(s)	13, 255, 311, 445
Mox20I	TGGCCA	1 cut(s)	417
Mph1103I	ATGCAT	1 cut(s)	234
MroXI	GAANNNNTTC	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	417
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeI	CATATG	1 cut(s)	203
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	2 cut(s)	22, 91
NsiI	ATGCAT	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	454
Psp1406I	AACGTT	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	454
PspPPI	RGGWCCY	1 cut(s)	454
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
Sau96I	GGNCC	1 cut(s)	454
SchI	GAGTC	1 cut(s)	34
SetI	ASST	8 cut(s)	24, 137, 168, 276, 322, 329, 425, 459
SfaNI	GCATC	3 cut(s)	63, 127, 219
SinI	GGWCC	1 cut(s)	454
Sse9I	AATT	2 cut(s)	58, 382
SsiI	CCGC	1 cut(s)	342
TaiI	ACGT	3 cut(s)	137, 168, 329
TaqI	TCGA	1 cut(s)	137
TasI	AATT	2 cut(s)	58, 382
TatI	WGTACW	1 cut(s)	298
TseFI	GTSAC	2 cut(s)	22, 91
Tsp45I	GTSAC	2 cut(s)	22, 91
TspDTI	ATGAA	3 cut(s)	17, 301, 376
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.