Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Reverse (-)

62384673 .. 62385481

Gene Structure 809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGTAGCTCCGATGCTGAGATCGAAAGCTGCACGTGCAAGCCCACCCGAGCCCATGTGTAGCTACGCCTTTGACAGGGAGGTGGACATGGTTACTCCCATGTGTACTCAGTTAACATATGAGGGCATTATTGATGAGTTTCTGCGTATCAATGATGGTTCTGTTGAGGTTGATCCATCCATCATGGATGTCAAACAAGAAGAAAAGAAGATGAAAGTTCCACTTAATTCAAGTGACAAGCTGTTTAAAGAGATGAGAGAATCTCCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

90

Amino Acids

10.24

Weight (kDa)

4.78

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	24 - 89	2.1e-15	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	167
AcvI	CACGTG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	231
AluBI	AGCT	4 cut(s)	8, 29, 63, 241
AluI	AGCT	4 cut(s)	8, 29, 63, 241
AlwI	GGATC	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	54
BbrPI	CACGTG	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	3 cut(s)	149, 184, 188
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	3
BplI	GAGNNNNNCTC	1 cut(s)	247
BsaAI	YACGTR	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	176, 193
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	8, 122
BseXI	GCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	20, 172
BspCNI	CTCAG	2 cut(s)	9, 121
BspPI	GGATC	1 cut(s)	167
BssMI	GATC	2 cut(s)	20, 172
BstBAI	YACGTR	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	17, 108
BstENI	CCTNNNNNAGG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	176, 193
BstKTI	GATC	2 cut(s)	23, 175
BstMBI	GATC	2 cut(s)	20, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	176, 193
Cac8I	GCNNGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	4 cut(s)	55, 88, 100, 184
CviJI	RGCY	6 cut(s)	8, 29, 42, 52, 63, 241
CviKI_1	RGCY	6 cut(s)	8, 29, 42, 52, 63, 241
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	2 cut(s)	17, 108
DpnI	GATC	2 cut(s)	22, 174
DpnII	GATC	2 cut(s)	20, 172
DraI	TTTAAA	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	54
Eco72I	CACGTG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	47
EcoNI	CCTNNNNNAGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	4 cut(s)	58, 91, 103, 187
FaiI	YATR	6 cut(s)	56, 89, 101, 118, 120, 185
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	4 cut(s)	54, 87, 99, 183
FauNDI	CATATG	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	163, 200
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
Hin1II	CATG	4 cut(s)	58, 91, 103, 187
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	1 cut(s)	260
HpaI	GTTAAC	1 cut(s)	114
Hpy166II	GTNNAC	3 cut(s)	85, 105, 114
Hpy188I	TCNGA	1 cut(s)	12
Hpy8I	GTNNAC	3 cut(s)	85, 105, 114
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	2 cut(s)	32, 38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	17, 108
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	4 cut(s)	58, 91, 103, 187
KspAI	GTTAAC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	20, 172
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	1 cut(s)	61
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	3
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	2 cut(s)	91, 233
MalI	GATC	2 cut(s)	22, 174
MboI	GATC	2 cut(s)	20, 172
MboII	GAAGA	2 cut(s)	212, 220
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	1 cut(s)	226
MnlI	CCTC	3 cut(s)	73, 115, 160
MseI	TTAA	3 cut(s)	113, 225, 246
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	2 cut(s)	20, 172
NlaIII	CATG	4 cut(s)	58, 91, 103, 187
NmuCI	GTSAC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	31
PmaCI	CACGTG	1 cut(s)	35
PmlI	CACGTG	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	35
PspCI	CACGTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	113, 225, 246
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	20, 172
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	7 cut(s)	10, 31, 37, 65, 84, 171, 243
SfaNI	GCATC	1 cut(s)	3
Sse9I	AATT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	226
TatI	WGTACW	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	3 cut(s)	113, 225, 246
Tru9I	TTAA	3 cut(s)	113, 225, 246
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.