Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032175.1

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 689

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032175.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ggaacagtctcagaaggaactcgtgaacatcctcaagaatattcgaggaaagaagtgcttggtggtcgatccgaagctcagcggctcaatctcgttgatcatccagactgcaattctcaaggaacaaggggttgaactgcggcatctttctgctgagactattcaaactgactgttccaaagtggtttaccttgtacgctcgcagctcagtttgatgaaatacattagctcgcatattcacaatgatatttccaaaggattacagagagaatactttctttatttcgtccctcgccgttcggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

101

Amino Acids

11.57

Weight (kDa)

9.55

Isoelectric Point (pI)

60.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	82, 140
AclWI	GGATC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	135, 165
AluBI	AGCT	3 cut(s)	77, 206, 229
AluI	AGCT	3 cut(s)	77, 206, 229
Alw26I	GTCTC	2 cut(s)	13, 150
AlwI	GGATC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	280
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	13, 150
BisI	GCNGC	3 cut(s)	83, 141, 204
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	3 cut(s)	84, 142, 205
BmsI	GCATC	1 cut(s)	152
Bpu1102I	GCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	18, 102
BseGI	GGATG	2 cut(s)	28, 100
BseMII	CTCAG	4 cut(s)	24, 92, 145, 221
BseXI	GCAGC	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	273
BsmAI	GTCTC	2 cut(s)	13, 150
BsmFI	GGGAC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	68, 97
Bsp1720I	GCTNAGC	1 cut(s)	78
BspACI	CCGC	2 cut(s)	82, 140
BspCNI	CTCAG	4 cut(s)	23, 91, 146, 220
BspPI	GGATC	1 cut(s)	63
BssMI	GATC	2 cut(s)	68, 97
BssSI	CACGAG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	7, 174
BstC8I	GCNNGC	2 cut(s)	201, 231
BstDEI	CTNAG	4 cut(s)	10, 78, 154, 207
BstF5I	GGATG	2 cut(s)	28, 100
BstKTI	GATC	2 cut(s)	71, 100
BstMAI	GTCTC	2 cut(s)	13, 150
BstMBI	GATC	2 cut(s)	68, 97
BstV1I	GCAGC	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	28, 100
Cac8I	GCNNGC	2 cut(s)	201, 231
Csp6I	GTAC	1 cut(s)	195
CviJI	RGCY	4 cut(s)	77, 85, 206, 229
CviKI_1	RGCY	4 cut(s)	77, 85, 206, 229
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	4 cut(s)	10, 78, 154, 207
DpnI	GATC	2 cut(s)	70, 99
DpnII	GATC	2 cut(s)	68, 97
FaiI	YATR	1 cut(s)	235
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	83, 141, 204
FokI	GGATG	2 cut(s)	15, 87
Fsp4HI	GCNGC	3 cut(s)	83, 141, 204
GluI	GCNGC	3 cut(s)	83, 141, 204
Hpy166II	GTNNAC	2 cut(s)	26, 188
Hpy188I	TCNGA	2 cut(s)	13, 73
Hpy188III	TCNNGA	3 cut(s)	23, 35, 104
Hpy8I	GTNNAC	2 cut(s)	26, 188
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	2 cut(s)	7, 174
HpyCH4V	TGCA	1 cut(s)	111
HpyF3I	CTNAG	4 cut(s)	10, 78, 154, 207
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	68, 97
LpnPI	CCDG	1 cut(s)	117
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	1 cut(s)	152
MalI	GATC	2 cut(s)	70, 99
MboI	GATC	2 cut(s)	68, 97
MluCI	AATT	1 cut(s)	112
MnlI	CCTC	3 cut(s)	39, 42, 301
MroXI	GAANNNNTTC	1 cut(s)	274
MspA1I	CMGCKG	1 cut(s)	82
NdeII	GATC	2 cut(s)	68, 97
PdmI	GAANNNNTTC	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	84, 142, 205
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SatI	GCNGC	3 cut(s)	83, 141, 204
Sau3AI	GATC	2 cut(s)	68, 97
SetI	ASST	4 cut(s)	79, 193, 208, 231
SfaNI	GCATC	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	33, 117
SmoI	CTYRAG	2 cut(s)	33, 117
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	2 cut(s)	82, 140
SspI	AATATT	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	7, 174
TaqI	TCGA	2 cut(s)	44, 67
TasI	AATT	1 cut(s)	112
TauI	GCSGC	2 cut(s)	85, 143
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.