Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000046.1

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Reverse (-)

161123 .. 165447

Gene Structure 4325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000046.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgatgggtggccaacaagagggaaagaagatgaaagttccacttaattcaagtgacaagctgtttaaagagacacgagatctcaactttgaagttgttgtccagattctacgtcaaaaagcaacatccatgaagcaggactacactgaggtgacttcaaatagccagacagtttctgaattgaaggattttgtcaaaaagctgaactcgttgccagaaatgaccaggcacataaatcttgctcagcatctgacgactatcacatcaaagtcatctttccttggacaacttgacatggaacacacaattattgagggtcagagttttgacatgtgcttagaatacattgaagaactgatccataagcaggagccccttgtaactgtcctccgcctcctcatcttattttccatcacaaattctgggttgcctaagaagaattttgactatttgaggagggaactactccatagttatgggtttgagcacatggttacattgaaaaatctagagaaagctggattgtttaaaaagcaggagacaaaaaccaactggctgacagttaaacgtgcattacaactcgttgttgaagacactgacactgcaaaccccaatgacatcgcctatgccttttctggatatgcgcctcttagcattcgcctcgtccagcacgctgttagatctggatggcgtcctattgaagagattctgaagctgttacctggaccacattcagaaacaaagagaggtcgattctcaagcagtgcatcatttgacactttgcagggggcggcgaacaatgtagacaaggtagctgatgggaggcgctcccttgtgcttgtcgtcttcatcggaggtgtaacatttgcagagatttctgcccttcgattcctcagttctcaggaaggaatggcgtatgatttgatagttgggacaacaaaaatagtcagtggccatagcttgacggaaacttttgtggggaagatggatgacctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

332

Amino Acids

37.36

Weight (kDa)

7.82

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	804
AciI	CCGC	2 cut(s)	391, 791
AclWI	GGATC	1 cut(s)	352
AcoI	YGGCCR	2 cut(s)	10, 952
AcsI	RAATTY	2 cut(s)	418, 439
AcuI	CTGAAG	1 cut(s)	731
AcyI	GRCGYC	1 cut(s)	691
AfiI	CCNNNNNNNGG	2 cut(s)	19, 367
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	8 cut(s)	51, 92, 159, 184, 350, 502, 590, 701
AjnI	CCWGG	2 cut(s)	224, 721
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	6 cut(s)	61, 202, 518, 715, 815, 960
AluI	AGCT	6 cut(s)	61, 202, 518, 715, 815, 960
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	2 cut(s)	65, 533
AlwI	GGATC	1 cut(s)	352
AlwNI	CAGNNNCTG	2 cut(s)	176, 250
AoxI	GGCC	2 cut(s)	10, 952
ApoI	RAATTY	2 cut(s)	418, 439
Asp700I	GAANNNNTTC	1 cut(s)	705
AspLEI	GCGC	2 cut(s)	646, 828
AspS9I	GGNCC	1 cut(s)	725
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	725
BalI	TGGCCA	2 cut(s)	12, 954
BanII	GRGCYC	1 cut(s)	375
BarI	GAAGNNNNNNTAC	2 cut(s)	125, 157
BauI	CACGAG	1 cut(s)	75
BbsI	GAAGAC	2 cut(s)	597, 838
Bbv12I	GWGCWC	1 cut(s)	489
BccI	CCATC	4 cut(s)	419, 681, 812, 979
BcgI	CGANNNNNNTGC	2 cut(s)	643, 677
BciT130I	CCWGG	2 cut(s)	226, 723
BcoDI	GTCTC	2 cut(s)	65, 533
BfaI	CTAG	1 cut(s)	509
BfoI	RGCGCY	1 cut(s)	829
BglII	AGATCT	2 cut(s)	79, 680
BisI	GCNGC	1 cut(s)	792
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	793
Bme1390I	CCNGG	2 cut(s)	226, 723
Bme18I	GGWCC	1 cut(s)	725
BmgT120I	GGNCC	1 cut(s)	725
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	2 cut(s)	226, 723
BmsI	GCATC	2 cut(s)	256, 776
BpiI	GAAGAC	2 cut(s)	597, 838
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	742
BsaHI	GRCGYC	1 cut(s)	691
BsaJI	CCNNGG	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 367
Bse1I	ACTGG	1 cut(s)	557
BseBI	CCWGG	2 cut(s)	226, 723
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	3 cut(s)	125, 692, 994
BseLI	CCNNNNNNNGG	2 cut(s)	19, 367
BseMII	CTCAG	4 cut(s)	138, 257, 907, 914
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	2 cut(s)	386, 469
BshFI	GGCC	2 cut(s)	12, 954
BsiHKAI	GWGCWC	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	946
BslI	CCNNNNNNNGG	2 cut(s)	19, 367
BsmAI	GTCTC	2 cut(s)	65, 533
BsmFI	GGGAC	1 cut(s)	946
BsmI	GAATGC	1 cut(s)	654
BsnI	GGCC	2 cut(s)	12, 954
Bsp1286I	GDGCHC	2 cut(s)	375, 489
Bsp143I	GATC	3 cut(s)	79, 357, 680
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	2 cut(s)	391, 791
BspANI	GGCC	2 cut(s)	12, 954
BspCNI	CTCAG	4 cut(s)	139, 256, 906, 913
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	557
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	3 cut(s)	79, 357, 680
BssNI	GRCGYC	1 cut(s)	691
BssSI	CACGAG	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	226, 723
Bst4CI	ACNGT	3 cut(s)	172, 385, 562
Bst6I	CTCTTC	1 cut(s)	696
BstACI	GRCGYC	1 cut(s)	691
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	7 cut(s)	147, 243, 337, 432, 650, 893, 900
BstF5I	GGATG	3 cut(s)	125, 692, 994
BstH2I	RGCGCY	1 cut(s)	829
BstHHI	GCGC	2 cut(s)	646, 828
BstKTI	GATC	3 cut(s)	82, 360, 683
BstMAI	GTCTC	2 cut(s)	65, 533
BstMBI	GATC	3 cut(s)	79, 357, 680
BstNI	CCWGG	2 cut(s)	226, 723
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	2 cut(s)	224, 721
BstV2I	GAAGAC	2 cut(s)	597, 838
BstX2I	RGATCY	2 cut(s)	79, 680
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	2 cut(s)	79, 680
BsuRI	GGCC	2 cut(s)	12, 954
BtgZI	GCGATG	1 cut(s)	604
BtsCI	GGATG	3 cut(s)	125, 692, 994
BtsI	GCAGTG	2 cut(s)	600, 769
BtsIMutI	CAGTG	5 cut(s)	144, 594, 600, 769, 955
Cac8I	GCNNGC	1 cut(s)	672
CaiI	CAGNNNCTG	2 cut(s)	176, 250
CfoI	GCGC	2 cut(s)	646, 828
Cfr13I	GGNCC	1 cut(s)	725
CseI	GACGC	1 cut(s)	680
CviAII	CATG	4 cut(s)	130, 295, 331, 490
DdeI	CTNAG	7 cut(s)	147, 243, 337, 432, 650, 893, 900
DpnI	GATC	3 cut(s)	81, 359, 682
DpnII	GATC	3 cut(s)	79, 357, 680
DraI	TTTAAA	2 cut(s)	67, 529
EaeI	YGGCCR	2 cut(s)	10, 952
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
EciI	GGCGGA	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	725
Eco57I	CTGAAG	1 cut(s)	731
EcoRII	CCWGG	2 cut(s)	224, 721
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	4 cut(s)	133, 298, 334, 493
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	1 cut(s)	946
FatI	CATG	4 cut(s)	129, 294, 330, 489
FblI	GTMKAC	1 cut(s)	804
Fnu4HI	GCNGC	1 cut(s)	792
FokI	GGATG	2 cut(s)	112, 699
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	792
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	2 cut(s)	645, 827
GluI	GCNGC	1 cut(s)	792
HaeII	RGCGCY	1 cut(s)	829
HaeIII	GGCC	2 cut(s)	12, 954
HgaI	GACGC	1 cut(s)	680
HhaI	GCGC	2 cut(s)	646, 828
Hin1I	GRCGYC	1 cut(s)	691
Hin1II	CATG	4 cut(s)	133, 298, 334, 493
Hin6I	GCGC	2 cut(s)	644, 826
HinP1I	GCGC	2 cut(s)	644, 826
HinfI	GANTC	4 cut(s)	106, 706, 753, 888
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188I	TCNGA	6 cut(s)	178, 252, 321, 711, 736, 854
Hpy188III	TCNNGA	5 cut(s)	103, 509, 636, 684, 902
Hpy8I	GTNNAC	1 cut(s)	805
HpyAV	CCTTC	3 cut(s)	178, 893, 899
HpyCH4III	ACNGT	3 cut(s)	172, 385, 562
HpyCH4IV	ACGT	2 cut(s)	112, 568
HpyCH4V	TGCA	5 cut(s)	572, 605, 767, 784, 869
HpyF3I	CTNAG	7 cut(s)	147, 243, 337, 432, 650, 893, 900
HpySE526I	ACGT	2 cut(s)	112, 568
Hsp92I	GRCGYC	1 cut(s)	691
Hsp92II	CATG	4 cut(s)	133, 298, 334, 493
HspAI	GCGC	2 cut(s)	644, 826
Kzo9I	GATC	3 cut(s)	79, 357, 680
LmnI	GCTCC	2 cut(s)	370, 833
LweI	GCATC	2 cut(s)	256, 776
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	2 cut(s)	112, 568
MaeIII	GTNAC	6 cut(s)	53, 151, 379, 493, 717, 859
MalI	GATC	3 cut(s)	81, 359, 682
MboI	GATC	3 cut(s)	79, 357, 680
MboII	GAAGA	7 cut(s)	40, 362, 448, 602, 713, 838, 994
MflI	RGATCY	2 cut(s)	79, 680
MhlI	GDGCHC	2 cut(s)	375, 489
MlsI	TGGCCA	2 cut(s)	12, 954
MluCI	AATT	5 cut(s)	46, 179, 306, 418, 439
MluNI	TGGCCA	2 cut(s)	12, 954
Mox20I	TGGCCA	2 cut(s)	12, 954
MroXI	GAANNNNTTC	1 cut(s)	705
MscI	TGGCCA	2 cut(s)	12, 954
MseI	TTAA	4 cut(s)	45, 66, 528, 564
MslI	CAYNNNNRTG	2 cut(s)	149, 474
Msp20I	TGGCCA	2 cut(s)	12, 954
MspR9I	CCNGG	2 cut(s)	226, 723
Mva1269I	GAATGC	1 cut(s)	654
MvaI	CCWGG	2 cut(s)	226, 723
NdeII	GATC	3 cut(s)	79, 357, 680
NlaIII	CATG	4 cut(s)	133, 298, 334, 493
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	2 cut(s)	53, 151
NspI	RCATGY	1 cut(s)	334
OliI	CACNNNNGTG	1 cut(s)	149
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	4 cut(s)	106, 706, 753, 888
PkrI	GCNGC	1 cut(s)	793
PscI	ACATGT	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	224, 721
PspGI	CCWGG	2 cut(s)	224, 721
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	725
PstNI	CAGNNNCTG	2 cut(s)	176, 250
PsuI	RGATCY	2 cut(s)	79, 680
RseI	CAYNNNNRTG	2 cut(s)	149, 474
SaqAI	TTAA	4 cut(s)	45, 66, 528, 564
SatI	GCNGC	1 cut(s)	792
Sau3AI	GATC	3 cut(s)	79, 357, 680
Sau96I	GGNCC	1 cut(s)	725
ScrFI	CCNGG	2 cut(s)	226, 723
SduI	GDGCHC	2 cut(s)	375, 489
SfaNI	GCATC	2 cut(s)	256, 776
SinI	GGWCC	1 cut(s)	725
SmiMI	CAYNNNNRTG	2 cut(s)	149, 474
SmlI	CTYRAG	1 cut(s)	757
SmoI	CTYRAG	1 cut(s)	757
Sse9I	AATT	5 cut(s)	46, 179, 306, 418, 439
SsiI	CCGC	2 cut(s)	391, 791
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	2 cut(s)	224, 721
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	3 cut(s)	172, 385, 562
TaiI	ACGT	2 cut(s)	115, 571
TaqI	TCGA	2 cut(s)	751, 886
TasI	AATT	5 cut(s)	46, 179, 306, 418, 439
TauI	GCSGC	1 cut(s)	794
TfiI	GAWTC	4 cut(s)	106, 706, 753, 888
Tru1I	TTAA	4 cut(s)	45, 66, 528, 564
Tru9I	TTAA	4 cut(s)	45, 66, 528, 564
TscAI	CASTG	5 cut(s)	151, 601, 607, 769, 955
TseFI	GTSAC	2 cut(s)	53, 151
Tsp45I	GTSAC	2 cut(s)	53, 151
TspDTI	ATGAA	3 cut(s)	47, 146, 838
TspGWI	ACGGA	1 cut(s)	980
TspRI	CASTG	5 cut(s)	151, 601, 607, 769, 955
VpaK11BI	GGWCC	1 cut(s)	725
XapI	RAATTY	2 cut(s)	418, 439
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	804
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.