RLG00000001008

Belongs to the STXBP unc-18 SEC1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
9169581 .. 9171379
1799 bp
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UTR
Exon/CDS
Intron
RLM00000001008

Sequence Viewer

Length: 1704 bp
ATGGCTCAGATTCCCAAATTAGACAATGCTCCTCTCAATCTCAAATATATGAGGGAACAGTCTCAGAAGGAGCTCATAAACATTCTCAAGAATATTCGAGGAAGGAAGTGTTTGGTGATTGACCCCAAGCTCGGCGGCTCAATATCATTGATCATTCAGACTGAACTTCTCAAAGAACTTGAGGTTGAACTGCGACATCTTTCGGCTGAAACAATTCAAACTGACTGTTCCAAAGTGGTTTTCCTTGTCCGTTCTCAGCTTAGTTTGATGAAATACATTAGTTCACAAGTCCATTATGATACTTCGAAAGGGTTACAGAGAGAATACTATCTTTACTTTGTCCCTTGCCGCGCAGTTGCTTGTGAGAAGATCCTTGAGGAGGAAAAAGAATGCCTTGTTGATGGTGATATGAGCTCACTTTGGCATATTGCGAAAGCCATTCACAAGCTTGAGTTTTCTTCTGGGGTGATACCAAATGTGAGGGCGAAAGGAAATGCATCGGTGCGTGTTGCTGACATTCTATACCGCATGCAAGCTAAGGAACCCGTTAGCTCATCAGATATGGTTGTTCCAGAGATAAATACTGTCATCCTTCTAGATAGGGAGGTGGACATGGTTACTCCCATGTGTACTCAGTTAACATATGAGGGCATTATTGATGAGTTTCTGCGTATCAATGATGGTTCTATTGAGGTTGATCCATCCATCATGGATGTCAAACAAGAGGGAAAGAAGATGAAAGTTCCACTTAATTCAAGTGACAAGCTGTTTAAAGAGATAAGAGATCCCCACTTTGAAGTTGTTGTCCAGATTCTACGCCAAAAAGTAACATCTATGAAGCAGGACTACAATGAGGTGACTTCAAATACACAGACTCTTTCTGAAATAAAGAATTTTGTCAAAAAGATGCACTCATTGCCAGAAGTGACAAGGCACATAAATCTTGCTAAGCATCTGATGACTTTCACGTCGAAGCCATCATTTTGTGGACTACTTGACATGGAACAAACAATTGTTGAGACTGAGAGTTTTGACATATGCTTAGATTATATTGAAGAAATGATGCACAAGCAGGAGCCTCTTGTAAGCGTCCTACGTCTTCTCATCTTATTCTCTATCACAAATTCTGGGTTGCCCAAAGAGAATTTTGACTATTTGAGGAATGAACTACTCCAGAGTTATGGATTTGAGCACATGGCTACATTGAAAAATCTGGAGAAGGCTGGATTGTTTAAAGAACAGGAGACAAAAGGCAACTGGCATAGAGTTAAGCGTGCCTTACAACTTGTCATTGAAAACAGTGACACAGCTAACCCAAATGACATTGACTATGTCTTTTCTGGATATGCACCTCTTAGCATTCGCCTTGTTCAGCATGCTATTCGATCTGGATGGAGTCCGATTGAAGAAATTCTAAAGCTGTTAGCTGGACCACATTCAGAAACAAAAAGAGGCCCATTCTCAAGCAGCGCATCATTTGACAATTTTCAGGGGGCAGCAACCAATGTAGACAAGGTAGCTGATGGGAAGCGCTCCCTTGTACTTGTCATCTTCATTGGAGGTGTAACATTTGCAGAGATTTCCGCCCTTCGGTTTCTTAGTTCTCGGGAAGCAATGGCATATGATTTCATAGTTGGGACAACGAAAATGGTTAGTGGCCATAGCTTGACTGAAACATTTGTGGGGAAGATGGAGGACCTGTAA

Protein Analysis

568

Amino Acids

64.25

Weight (kDa)

6.03

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec1 PF00995 36 - 127 2.8e-08 Sec1 family
Sec1 PF00995 130 - 557 3.7e-89 Sec1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 967
AccI GTMKAC 1 cut(s) 1509
AccII CGCG 1 cut(s) 351
AciI CCGC 4 cut(s) 135, 349, 526, 1584
AclWI GGATC 3 cut(s) 364, 692, 779
AcoI YGGCCR 1 cut(s) 1657
AcsI RAATTY 4 cut(s) 892, 1123, 1144, 1410
AfaI GTAC 2 cut(s) 631, 1542
AfeI AGCGCT 1 cut(s) 1532
AfiI CCNNNNNNNGG 3 cut(s) 131, 379, 1590
AgsI TTSAA 9 cut(s) 188, 218, 756, 797, 864, 1055, 1207, 1295, 1406
AjiI CACGTC 1 cut(s) 969
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
Alw21I GWGCWC 3 cut(s) 75, 416, 1194
Alw26I GTCTC 3 cut(s) 66, 1013, 1238
AlwI GGATC 3 cut(s) 364, 692, 779
Ama87I CYCGRG 1 cut(s) 1605
Aor51HI AGCGCT 1 cut(s) 1532
AoxI GGCC 2 cut(s) 1453, 1657
ApeKI GCWGC 2 cut(s) 1467, 1496
ApoI RAATTY 4 cut(s) 892, 1123, 1144, 1410
Asp700I GAANNNNTTC 2 cut(s) 213, 1410
AspLEI GCGC 3 cut(s) 353, 1472, 1533
AspS9I GGNCC 3 cut(s) 1430, 1454, 1696
AsuHPI GGTGA 4 cut(s) 127, 416, 478, 868
AsuII TTCGAA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 1605
AvaII GGWCC 2 cut(s) 1430, 1696
BalI TGGCCA 1 cut(s) 1659
BanII GRGCYC 2 cut(s) 75, 416
BarI GAAGNNNNNNTAC 2 cut(s) 830, 862
BbsI GAAGAC 1 cut(s) 1091
Bbv12I GWGCWC 3 cut(s) 75, 416, 1194
BbvI GCAGC 2 cut(s) 1479, 1508
BccI CCATC 8 cut(s) 395, 674, 709, 713, 985, 1386, 1517, 1684
BcgI CGANNNNNNTGC 2 cut(s) 1364, 1398
BclI TGATCA 1 cut(s) 150
BcoDI GTCTC 3 cut(s) 66, 1013, 1238
BfaI CTAG 1 cut(s) 596
BfoI RGCGCY 1 cut(s) 1534
BisI GCNGC 4 cut(s) 136, 349, 1468, 1497
BlpI GCTNAGC 1 cut(s) 948
BlsI GCNGC 4 cut(s) 137, 350, 1469, 1498
Bme18I GGWCC 2 cut(s) 1430, 1696
BmeT110I CYCGRG 1 cut(s) 1605
BmgBI CACGTC 1 cut(s) 969
BmgT120I GGNCC 3 cut(s) 1430, 1454, 1696
BmiI GGNNCC 2 cut(s) 543, 1077
BmsI GCATC 5 cut(s) 506, 897, 961, 1053, 1481
BpiI GAAGAC 1 cut(s) 1091
BpmI CTGGAG 2 cut(s) 1157, 1235
Bpu10I CCTNAGC 1 cut(s) 537
Bpu1102I GCTNAGC 1 cut(s) 948
Bpu14I TTCGAA 1 cut(s) 305
BpuEI CTTGAG 5 cut(s) 71, 200, 395, 470, 1447
BsaXI ACNNNNNCTCC 1 cut(s) 1685
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 379, 1590
Bse1I ACTGG 1 cut(s) 1262
Bse3DI GCAATG 2 cut(s) 914, 1620
BseGI GGATG 4 cut(s) 588, 701, 718, 1397
BseLI CCNNNNNNNGG 3 cut(s) 131, 379, 1590
BseMI GCAATG 2 cut(s) 914, 1620
BseMII CTCAG 5 cut(s) 20, 77, 269, 647, 1014
BseNI ACTGG 1 cut(s) 1262
BseRI GAGGAG 2 cut(s) 21, 392
BseXI GCAGC 2 cut(s) 1479, 1508
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 2 cut(s) 1455, 1659
BsiHKAI GWGCWC 3 cut(s) 75, 416, 1194
BsiHKCI CYCGRG 1 cut(s) 1605
BslFI GGGAC 2 cut(s) 326, 1651
BslI CCNNNNNNNGG 3 cut(s) 131, 379, 1590
BsmAI GTCTC 3 cut(s) 66, 1013, 1238
BsmFI GGGAC 2 cut(s) 326, 1651
BsmI GAATGC 2 cut(s) 395, 1359
BsnI GGCC 2 cut(s) 1455, 1659
BsoBI CYCGRG 1 cut(s) 1605
Bsp119I TTCGAA 1 cut(s) 305
Bsp1286I GDGCHC 3 cut(s) 75, 416, 1194
Bsp143I GATC 5 cut(s) 150, 369, 697, 784, 1385
Bsp1720I GCTNAGC 1 cut(s) 948
BspACI CCGC 4 cut(s) 135, 349, 526, 1584
BspANI GGCC 2 cut(s) 1455, 1659
BspCNI CTCAG 5 cut(s) 19, 76, 268, 646, 1015
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 2 cut(s) 543, 1077
BspPI GGATC 3 cut(s) 364, 692, 779
BspT104I TTCGAA 1 cut(s) 305
BsrDI GCAATG 2 cut(s) 914, 1620
BsrI ACTGG 1 cut(s) 1262
BssMI GATC 5 cut(s) 150, 369, 697, 784, 1385
Bst4CI ACNGT 4 cut(s) 60, 227, 586, 1301
BstAPI GCANNNNNTGC 1 cut(s) 916
BstBI TTCGAA 1 cut(s) 305
BstC8I GCNNGC 4 cut(s) 530, 534, 1275, 1377
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 4 cut(s) 588, 701, 718, 1397
BstFNI CGCG 1 cut(s) 351
BstH2I RGCGCY 1 cut(s) 1534
BstHHI GCGC 3 cut(s) 353, 1472, 1533
BstKTI GATC 5 cut(s) 153, 372, 700, 787, 1388
BstMAI GTCTC 3 cut(s) 66, 1013, 1238
BstMBI GATC 5 cut(s) 150, 369, 697, 784, 1385
BstMWI GCNNNNNNNGC 1 cut(s) 916
BstNSI RCATGY 2 cut(s) 532, 1379
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 1479, 1508
BstV2I GAAGAC 1 cut(s) 1091
BstX2I RGATCY 2 cut(s) 369, 784
BstXI CCANNNNNNTGG 1 cut(s) 1181
BstYI RGATCY 2 cut(s) 369, 784
BsuRI GGCC 2 cut(s) 1455, 1659
BtrI CACGTC 1 cut(s) 969
BtsCI GGATG 4 cut(s) 588, 701, 718, 1397
BtsIMutI CAGTG 1 cut(s) 1306
Cac8I GCNNGC 4 cut(s) 530, 534, 1275, 1377
CfoI GCGC 3 cut(s) 353, 1472, 1533
Cfr13I GGNCC 3 cut(s) 1430, 1454, 1696
CseI GACGC 1 cut(s) 1078
Csp6I GTAC 2 cut(s) 630, 1541
CviAII CATG 7 cut(s) 529, 613, 625, 709, 1000, 1195, 1376
CviQI GTAC 2 cut(s) 630, 1541
DpnI GATC 5 cut(s) 152, 371, 699, 786, 1387
DpnII GATC 5 cut(s) 150, 369, 697, 784, 1385
DraI TTTAAA 2 cut(s) 772, 1234
DrdI GACNNNNNNGTC 1 cut(s) 967
DseDI GACNNNNNNGTC 1 cut(s) 967
EaeI YGGCCR 1 cut(s) 1657
EciI GGCGGA 1 cut(s) 1573
Ecl136II GAGCTC 2 cut(s) 73, 414
Eco24I GRGCYC 2 cut(s) 75, 416
Eco47I GGWCC 2 cut(s) 1430, 1696
Eco47III AGCGCT 1 cut(s) 1532
Eco53kI GAGCTC 2 cut(s) 73, 414
Eco88I CYCGRG 1 cut(s) 1605
EcoICRI GAGCTC 2 cut(s) 73, 414
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 1696
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 2 cut(s) 75, 416
FaeI CATG 7 cut(s) 532, 616, 628, 712, 1003, 1198, 1379
FalI AAGNNNNNCTT 6 cut(s) 378, 410, 732, 764, 1262, 1294
FaqI GGGAC 2 cut(s) 326, 1651
FatI CATG 7 cut(s) 528, 612, 624, 708, 999, 1194, 1375
FauNDI CATATG 3 cut(s) 643, 1037, 1621
FbaI TGATCA 1 cut(s) 150
FblI GTMKAC 1 cut(s) 1509
Fnu4HI GCNGC 4 cut(s) 136, 349, 1468, 1497
FokI GGATG 4 cut(s) 575, 688, 725, 1404
FriOI GRGCYC 2 cut(s) 75, 416
Fsp4HI GCNGC 4 cut(s) 136, 349, 1468, 1497
FspBI CTAG 1 cut(s) 596
GlaI GCGC 3 cut(s) 352, 1471, 1532
GluI GCNGC 4 cut(s) 136, 349, 1468, 1497
GsuI CTGGAG 2 cut(s) 1157, 1235
HaeII RGCGCY 1 cut(s) 1534
HaeIII GGCC 2 cut(s) 1455, 1659
HgaI GACGC 1 cut(s) 1078
HhaI GCGC 3 cut(s) 353, 1472, 1533
Hin1II CATG 7 cut(s) 532, 616, 628, 712, 1003, 1198, 1379
Hin6I GCGC 3 cut(s) 351, 1470, 1531
HinP1I GCGC 3 cut(s) 351, 1470, 1531
HincII GTYRAC 1 cut(s) 639
HindII GTYRAC 1 cut(s) 639
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 4 cut(s) 10, 811, 874, 1396
HpaI GTTAAC 1 cut(s) 639
HphI GGTGA 4 cut(s) 127, 416, 478, 868
Hpy166II GTNNAC 6 cut(s) 284, 610, 630, 639, 989, 1510
Hpy188I TCNGA 8 cut(s) 9, 66, 159, 559, 883, 957, 1401, 1441
Hpy188III TCNNGA 9 cut(s) 88, 572, 596, 808, 1174, 1214, 1341, 1389, 1607
Hpy8I GTNNAC 6 cut(s) 284, 610, 630, 639, 989, 1510
Hpy99I CGWCG 1 cut(s) 973
HpyAV CCTTC 5 cut(s) 61, 96, 602, 1213, 1598
HpyCH4III ACNGT 4 cut(s) 60, 227, 586, 1301
HpyCH4IV ACGT 2 cut(s) 968, 1096
HpyCH4V TGCA 6 cut(s) 497, 532, 910, 1066, 1349, 1574
HpyF10VI GCNNNNNNNGC 1 cut(s) 916
HpySE526I ACGT 2 cut(s) 968, 1096
Hsp92II CATG 7 cut(s) 532, 616, 628, 712, 1003, 1198, 1379
HspAI GCGC 3 cut(s) 351, 1470, 1531
Ksp22I TGATCA 1 cut(s) 150
KspAI GTTAAC 1 cut(s) 639
Kzo9I GATC 5 cut(s) 150, 369, 697, 784, 1385
LmnI GCTCC 4 cut(s) 34, 70, 1075, 1538
Lsp1109I GCAGC 2 cut(s) 1479, 1508
LweI GCATC 5 cut(s) 506, 897, 961, 1053, 1481
MaeI CTAG 1 cut(s) 596
MaeII ACGT 2 cut(s) 968, 1096
MaeIII GTNAC 8 cut(s) 312, 616, 758, 826, 856, 925, 1301, 1564
MalI GATC 5 cut(s) 152, 371, 699, 786, 1387
MboI GATC 5 cut(s) 150, 369, 697, 784, 1385
MboII GAAGA 8 cut(s) 379, 450, 745, 1067, 1091, 1418, 1543, 1699
MfeI CAATTG 1 cut(s) 1011
MflI RGATCY 2 cut(s) 369, 784
MhlI GDGCHC 3 cut(s) 75, 416, 1194
MlsI TGGCCA 1 cut(s) 1659
MluCI AATT 9 cut(s) 17, 213, 751, 892, 1011, 1123, 1144, 1410, 1483
MluNI TGGCCA 1 cut(s) 1659
MlyI GAGTC 2 cut(s) 868, 1405
Mox20I TGGCCA 1 cut(s) 1659
Mph1103I ATGCAT 1 cut(s) 499
MroXI GAANNNNTTC 2 cut(s) 213, 1410
MscI TGGCCA 1 cut(s) 1659
MseI TTAA 5 cut(s) 638, 750, 771, 1233, 1269
Msp20I TGGCCA 1 cut(s) 1659
MunI CAATTG 1 cut(s) 1011
Mva1269I GAATGC 2 cut(s) 395, 1359
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 916
NdeI CATATG 3 cut(s) 643, 1037, 1621
NdeII GATC 5 cut(s) 150, 369, 697, 784, 1385
NlaIII CATG 7 cut(s) 532, 616, 628, 712, 1003, 1198, 1379
NlaIV GGNNCC 2 cut(s) 543, 1077
NmeAIII GCCGAG 1 cut(s) 111
NmuCI GTSAC 4 cut(s) 758, 856, 925, 1301
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 2 cut(s) 532, 1379
NspV TTCGAA 1 cut(s) 305
PaeI GCATGC 2 cut(s) 532, 1379
PctI GAATGC 2 cut(s) 395, 1359
PdmI GAANNNNTTC 2 cut(s) 213, 1410
PfeI GAWTC 2 cut(s) 10, 811
PflFI GACNNNGTC 1 cut(s) 1331
PkrI GCNGC 4 cut(s) 137, 350, 1469, 1498
PleI GAGTC 2 cut(s) 868, 1404
PpsI GAGTC 2 cut(s) 868, 1404
PpuMI RGGWCCY 1 cut(s) 1696
Psp124BI GAGCTC 2 cut(s) 75, 416
Psp5II RGGWCCY 1 cut(s) 1696
PspN4I GGNNCC 2 cut(s) 543, 1077
PspPI GGNCC 3 cut(s) 1430, 1454, 1696
PspPPI RGGWCCY 1 cut(s) 1696
PsuI RGATCY 2 cut(s) 369, 784
PsyI GACNNNGTC 1 cut(s) 1331
RsaI GTAC 2 cut(s) 631, 1542
RsaNI GTAC 2 cut(s) 630, 1541
SacI GAGCTC 2 cut(s) 75, 416
SaqAI TTAA 5 cut(s) 638, 750, 771, 1233, 1269
SatI GCNGC 4 cut(s) 136, 349, 1468, 1497
Sau3AI GATC 5 cut(s) 150, 369, 697, 784, 1385
Sau96I GGNCC 3 cut(s) 1430, 1454, 1696
SchI GAGTC 2 cut(s) 868, 1405
SduI GDGCHC 3 cut(s) 75, 416, 1194
SfaNI GCATC 5 cut(s) 506, 897, 961, 1053, 1481
SfuI TTCGAA 1 cut(s) 305
SinI GGWCC 2 cut(s) 1430, 1696
SmlI CTYRAG 5 cut(s) 86, 179, 374, 449, 1462
SmoI CTYRAG 5 cut(s) 86, 179, 374, 449, 1462
SphI GCATGC 2 cut(s) 532, 1379
Sse9I AATT 9 cut(s) 17, 213, 751, 892, 1011, 1123, 1144, 1410, 1483
SsiI CCGC 4 cut(s) 135, 349, 526, 1584
SspI AATATT 1 cut(s) 94
SspMI CTAG 1 cut(s) 596
SstI GAGCTC 2 cut(s) 75, 416
TaaI ACNGT 4 cut(s) 60, 227, 586, 1301
TaiI ACGT 2 cut(s) 971, 1099
TaqI TCGA 4 cut(s) 97, 305, 971, 1384
TasI AATT 9 cut(s) 17, 213, 751, 892, 1011, 1123, 1144, 1410, 1483
TatI WGTACW 2 cut(s) 629, 1540
TauI GCSGC 2 cut(s) 138, 351
TfiI GAWTC 2 cut(s) 10, 811
Tru1I TTAA 5 cut(s) 638, 750, 771, 1233, 1269
Tru9I TTAA 5 cut(s) 638, 750, 771, 1233, 1269
TscAI CASTG 1 cut(s) 1306
TseFI GTSAC 4 cut(s) 758, 856, 925, 1301
TseI GCWGC 2 cut(s) 1467, 1496
Tsp45I GTSAC 4 cut(s) 758, 856, 925, 1301
TspDTI ATGAA 6 cut(s) 284, 752, 851, 1179, 1543, 1618
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 1306
Tth111I GACNNNGTC 1 cut(s) 1331
VpaK11BI GGWCC 2 cut(s) 1430, 1696
XagI CCTNNNNNAGG 1 cut(s) 377
XapI RAATTY 4 cut(s) 892, 1123, 1144, 1410
XbaI TCTAGA 1 cut(s) 595
XceI RCATGY 2 cut(s) 532, 1379
XmiI GTMKAC 1 cut(s) 1509
XmnI GAANNNNTTC 2 cut(s) 213, 1410
XspI CTAG 1 cut(s) 596
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.