Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Forward (+)

13586613 .. 13588758

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12990.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAGCAGGACTACACCGATGTGACTAGCAATAACCAGACAGTTTCTGAATTGAAGGACTTTGTCAAAAAACTGAACTCATTGCCAGAAATGACTAGGCACATAAATCTTGCTCAGCATCTGTCAACGTTCACGTCAAAGACATCATTTCTTGGACAACTTGACATGGAACACACAATTATTGAGAGTCAAAGTTATGACATATGCTTTGAGCATATTGAAGAAATGATCCATAAGCAGGAGCCTCTTGTGAATGTCCTACGTCTTCTCATATTATTTTCTATTACAAATTCTGGGTTGCCCAAAAAGCATTTCGACTATTTAAGGAGAGAACTACTCCATAGTTATGGATTCGAGCACATGGTTACACTGAATAATTTAGAGAAAGCTGGATTGCTTAAAAAACAGGAGACGAAAAGCAACTGGCTGACAGTTAAACGTGCCTTGCAACTTGTAGTTGAGGACACTGACACTGCAAACCCCAATGATATCTCCTATGTGTTTTCTGGATATGCACCTCTTAGCATTCGCCTCATCCAGCAAGCTGTTCGATCTGGATGGCGTCCTATTGAAGAGATTCTGAGGCTTTTACCTGGACCACATTCAGAAATAAAGAGAGGCAGATTCTCAAGCAGCCCATCGGTAGACACTTTGCAGGGGCATTCGGCCAGTGTAGACAAGGTATCTGATGGAAGGCGTTCTCTAGTACTTGTTGTCTTCATTGGAGGTGTAACGTTTGCAGAGATCTCTGCTCTTCGATTTCTCAGTGCTCAGGAAGGGATGGCATATGATTTGATAATTGGGACCACGAAAATAGCCAACGGCCGCACCTTGACCGAAACATTCATGGGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

286

Amino Acids

32.18

Weight (kDa)

6.8

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	645, 675
AciI	CCGC	1 cut(s)	826
AclI	AACGTT	2 cut(s)	128, 734
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	2 cut(s)	666, 823
AcsI	RAATTY	1 cut(s)	289
AcyI	GRCGYC	1 cut(s)	562
AfaI	GTAC	1 cut(s)	708
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	55, 221, 572
AjiI	CACGTC	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	592
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AleI	CACNNNNGTG	1 cut(s)	20
AluBI	AGCT	2 cut(s)	389, 545
AluI	AGCT	2 cut(s)	389, 545
Alw21I	GWGCWC	2 cut(s)	360, 772
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	1 cut(s)	223
AlwNI	CAGNNNCTG	2 cut(s)	47, 121
AoxI	GGCC	2 cut(s)	666, 823
ApeKI	GCWGC	1 cut(s)	633
ApoI	RAATTY	1 cut(s)	289
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp700I	GAANNNNTTC	2 cut(s)	576, 697
AspS9I	GGNCC	2 cut(s)	596, 804
AvaII	GGWCC	2 cut(s)	596, 804
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbsI	GAAGAC	2 cut(s)	257, 709
Bbv12I	GWGCWC	2 cut(s)	360, 772
BbvI	GCAGC	1 cut(s)	645
BccI	CCATC	4 cut(s)	552, 646, 683, 775
BceAI	ACGGC	1 cut(s)	838
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	1 cut(s)	594
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	3 cut(s)	27, 96, 704
BglII	AGATCT	1 cut(s)	744
BisI	GCNGC	2 cut(s)	634, 826
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	2 cut(s)	635, 827
BmcAI	AGTACT	1 cut(s)	708
Bme1390I	CCNGG	1 cut(s)	594
Bme18I	GGWCC	2 cut(s)	596, 804
BmgBI	CACGTC	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	596, 804
BmiI	GGNNCC	2 cut(s)	243, 805
BmrFI	CCNGG	1 cut(s)	594
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	2 cut(s)	257, 709
BplI	GAGNNNNNCTC	2 cut(s)	321, 353
Bpu10I	CCTNAGC	1 cut(s)	771
Bpu1102I	GCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	613
BsaHI	GRCGYC	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	428, 669
Bse3DI	GCAATG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	594
BseGI	GGATG	3 cut(s)	534, 563, 786
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	4 cut(s)	128, 572, 778, 785
BseNI	ACTGG	2 cut(s)	428, 669
BseX3I	CGGCCG	1 cut(s)	823
BseXI	GCAGC	1 cut(s)	645
Bsh1285I	CGRYCG	1 cut(s)	826
BshFI	GGCC	2 cut(s)	668, 825
BsiEI	CGRYCG	1 cut(s)	826
BsiHKAI	GWGCWC	2 cut(s)	360, 772
BslFI	GGGAC	1 cut(s)	817
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	404
BsmBI	CGTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	817
BsmI	GAATGC	2 cut(s)	525, 661
BsnI	GGCC	2 cut(s)	668, 825
Bsp1286I	GDGCHC	2 cut(s)	360, 772
Bsp143I	GATC	3 cut(s)	228, 551, 744
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	826
BspANI	GGCC	2 cut(s)	668, 825
BspCNI	CTCAG	4 cut(s)	127, 573, 777, 784
BspLI	GGNNCC	2 cut(s)	243, 805
BspPI	GGATC	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	759
BsrDI	GCAATG	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	428, 669
BssMI	GATC	3 cut(s)	228, 551, 744
BssNI	GRCGYC	1 cut(s)	562
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	2 cut(s)	43, 433
Bst6I	CTCTTC	2 cut(s)	567, 759
BstACI	GRCGYC	1 cut(s)	562
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	5 cut(s)	114, 521, 581, 764, 771
BstF5I	GGATG	3 cut(s)	534, 563, 786
BstKTI	GATC	3 cut(s)	231, 554, 747
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	3 cut(s)	228, 551, 744
BstMCI	CGRYCG	1 cut(s)	826
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstNI	CCWGG	1 cut(s)	594
BstSCI	CCNGG	1 cut(s)	592
BstV1I	GCAGC	1 cut(s)	645
BstV2I	GAAGAC	2 cut(s)	257, 709
BstX2I	RGATCY	1 cut(s)	744
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	744
BstZI	CGGCCG	1 cut(s)	823
BsuRI	GGCC	2 cut(s)	668, 825
BtrI	CACGTC	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	534, 563, 786
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	5 cut(s)	368, 465, 471, 676, 772
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	2 cut(s)	47, 121
Cfr13I	GGNCC	2 cut(s)	596, 804
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	707
CviAII	CATG	3 cut(s)	166, 361, 847
CviJI	RGCY	9 cut(s)	244, 389, 427, 545, 586, 636, 668, 818, 825
CviKI_1	RGCY	9 cut(s)	244, 389, 427, 545, 586, 636, 668, 818, 825
CviQI	GTAC	1 cut(s)	707
DdeI	CTNAG	5 cut(s)	114, 521, 581, 764, 771
DpnI	GATC	3 cut(s)	230, 553, 746
DpnII	GATC	3 cut(s)	228, 551, 744
EaeI	YGGCCR	2 cut(s)	666, 823
EagI	CGGCCG	1 cut(s)	823
Eam1104I	CTCTTC	2 cut(s)	567, 759
EarI	CTCTTC	2 cut(s)	567, 759
EclXI	CGGCCG	1 cut(s)	823
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	2 cut(s)	596, 804
Eco52I	CGGCCG	1 cut(s)	823
EcoRII	CCWGG	1 cut(s)	592
EcoRV	GATATC	1 cut(s)	490
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	3 cut(s)	169, 364, 850
FaqI	GGGAC	1 cut(s)	817
FatI	CATG	3 cut(s)	165, 360, 846
FauNDI	CATATG	2 cut(s)	203, 787
FblI	GTMKAC	2 cut(s)	645, 675
Fnu4HI	GCNGC	2 cut(s)	634, 826
FokI	GGATG	3 cut(s)	521, 570, 793
Fsp4HI	GCNGC	2 cut(s)	634, 826
FspBI	CTAG	3 cut(s)	27, 96, 704
GluI	GCNGC	2 cut(s)	634, 826
HaeIII	GGCC	2 cut(s)	668, 825
HgaI	GACGC	1 cut(s)	551
Hin1I	GRCGYC	1 cut(s)	562
Hin1II	CATG	3 cut(s)	169, 364, 850
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	4 cut(s)	187, 351, 577, 624
Hpy166II	GTNNAC	4 cut(s)	126, 132, 646, 676
Hpy188I	TCNGA	4 cut(s)	49, 582, 607, 688
Hpy188III	TCNNGA	3 cut(s)	507, 555, 773
Hpy8I	GTNNAC	4 cut(s)	126, 132, 646, 676
HpyAV	CCTTC	3 cut(s)	49, 687, 770
HpyCH4III	ACNGT	2 cut(s)	43, 433
HpyCH4IV	ACGT	5 cut(s)	128, 134, 262, 439, 734
HpyCH4V	TGCA	5 cut(s)	448, 476, 515, 655, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
HpyF3I	CTNAG	5 cut(s)	114, 521, 581, 764, 771
HpySE526I	ACGT	5 cut(s)	128, 134, 262, 439, 734
Hsp92I	GRCGYC	1 cut(s)	562
Hsp92II	CATG	3 cut(s)	169, 364, 850
Kzo9I	GATC	3 cut(s)	228, 551, 744
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	1 cut(s)	645
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	3 cut(s)	27, 96, 704
MaeII	ACGT	5 cut(s)	128, 134, 262, 439, 734
MaeIII	GTNAC	3 cut(s)	22, 364, 730
MalI	GATC	3 cut(s)	230, 553, 746
MboI	GATC	3 cut(s)	228, 551, 744
MboII	GAAGA	5 cut(s)	233, 257, 584, 709, 746
MflI	RGATCY	1 cut(s)	744
MhlI	GDGCHC	2 cut(s)	360, 772
MluCI	AATT	5 cut(s)	50, 177, 289, 376, 798
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	7 cut(s)	255, 454, 528, 542, 576, 611, 719
MroXI	GAANNNNTTC	2 cut(s)	576, 697
MseI	TTAA	3 cut(s)	323, 399, 435
MslI	CAYNNNNRTG	2 cut(s)	20, 345
MspR9I	CCNGG	1 cut(s)	594
Mva1269I	GAATGC	2 cut(s)	525, 661
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	1 cut(s)	307
NdeI	CATATG	2 cut(s)	203, 787
NdeII	GATC	3 cut(s)	228, 551, 744
NlaIII	CATG	3 cut(s)	169, 364, 850
NlaIV	GGNNCC	2 cut(s)	243, 805
NmuCI	GTSAC	1 cut(s)	22
OliI	CACNNNNGTG	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	759
PctI	GAATGC	2 cut(s)	525, 661
PdmI	GAANNNNTTC	2 cut(s)	576, 697
PfeI	GAWTC	3 cut(s)	351, 577, 624
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	635, 827
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp1406I	AACGTT	2 cut(s)	128, 734
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	243, 805
PspPI	GGNCC	2 cut(s)	596, 804
PstNI	CAGNNNCTG	2 cut(s)	47, 121
PsuI	RGATCY	1 cut(s)	744
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	708
RsaNI	GTAC	1 cut(s)	707
RseI	CAYNNNNRTG	2 cut(s)	20, 345
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	3 cut(s)	323, 399, 435
SatI	GCNGC	2 cut(s)	634, 826
Sau3AI	GATC	3 cut(s)	228, 551, 744
Sau96I	GGNCC	2 cut(s)	596, 804
ScaI	AGTACT	1 cut(s)	708
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	594
SduI	GDGCHC	2 cut(s)	360, 772
SfaNI	GCATC	1 cut(s)	127
SinI	GGWCC	2 cut(s)	596, 804
SmiMI	CAYNNNNRTG	2 cut(s)	20, 345
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	5 cut(s)	50, 177, 289, 376, 798
SsiI	CCGC	1 cut(s)	826
SspMI	CTAG	3 cut(s)	27, 96, 704
StyD4I	CCNGG	1 cut(s)	592
TaaI	ACNGT	2 cut(s)	43, 433
TaiI	ACGT	5 cut(s)	131, 137, 265, 442, 737
TaqI	TCGA	4 cut(s)	315, 354, 550, 757
TaqII	GACCGA	1 cut(s)	851
TasI	AATT	5 cut(s)	50, 177, 289, 376, 798
TatI	WGTACW	1 cut(s)	706
TauI	GCSGC	1 cut(s)	828
TfiI	GAWTC	3 cut(s)	351, 577, 624
Tru1I	TTAA	3 cut(s)	323, 399, 435
Tru9I	TTAA	3 cut(s)	323, 399, 435
TscAI	CASTG	5 cut(s)	375, 472, 478, 676, 772
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	633
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	3 cut(s)	17, 709, 835
TspRI	CASTG	5 cut(s)	375, 472, 478, 676, 772
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	2 cut(s)	596, 804
XapI	RAATTY	1 cut(s)	289
XmiI	GTMKAC	2 cut(s)	645, 675
XmnI	GAANNNNTTC	2 cut(s)	576, 697
XspI	CTAG	3 cut(s)	27, 96, 704
ZrmI	AGTACT	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.