Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002923.1

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Forward (+)

139865 .. 140711

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002923.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggcccagattcccaagttggacaatgctcctgtaaatctcaaatatatgagggaacagtctcagaaggagctcataaacatccttaagaatattcgaggaaggaagtgtttggtgattgaccccaagctcagtggttcaatatcattgatcattcagactgcacttctcaaagaacttgaggttgaactgcgacatctttcggctgaaacaattcaaactgactgttccaaagtggttttccttgtccgttctcagcttagtttgatgaaatacattagttcacaagtccaaaatgatacttcgaaaggtgttgcttgtgagaagatccttgaggaggaaaaagtccatgacttgttgagtataggggagtaccagctatacagtgttccattggatgaggatgttttgtcatttgaacttgatctctctctcaaggaatgccttgttgatggtgatatgagctcactttggcatattgcgaaagccattcacaagcttgagttttcttttggggtgaaaccaaatgtgagggcgaaaggaaatgcatcggtgcgtgttgctgacattctaaacggcatgcaagctgaggaacccgttagctcatcagatacgttaacatatgagggcattattgatgagtttctgcgtatcaatgatggttctgttgaggttgatccatccttcatggatgtcaaacaagaagaaaagaagatgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

240

Amino Acids

26.97

Weight (kDa)

5.01

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	322, 671
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	337
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	4 cut(s)	141, 188, 218, 419
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	8 cut(s)	73, 130, 259, 379, 465, 499, 587, 603
AluI	AGCT	8 cut(s)	73, 130, 259, 379, 465, 499, 587, 603
Alw21I	GWGCWC	2 cut(s)	75, 467
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	322, 671
AoxI	GGCC	1 cut(s)	3
Asp700I	GAANNNNTTC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	127, 467, 529
AsuII	TTCGAA	1 cut(s)	305
BanII	GRGCYC	2 cut(s)	75, 467
Bbv12I	GWGCWC	2 cut(s)	75, 467
BbvCI	CCTCAGC	1 cut(s)	588
BccI	CCATC	3 cut(s)	446, 653, 688
BceAI	ACGGC	1 cut(s)	592
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	594
BmsI	GCATC	1 cut(s)	557
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	4 cut(s)	200, 353, 419, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
BseGI	GGATG	5 cut(s)	81, 403, 409, 680, 697
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	4 cut(s)	77, 145, 269, 579
BseRI	GAGGAG	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	75, 467
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	2 cut(s)	75, 467
Bsp143I	GATC	4 cut(s)	150, 327, 424, 676
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	76, 144, 268, 580
BspLI	GGNNCC	1 cut(s)	594
BspPI	GGATC	2 cut(s)	322, 671
BspT104I	TTCGAA	1 cut(s)	305
BspTI	CTTAAG	1 cut(s)	86
BssMI	GATC	4 cut(s)	150, 327, 424, 676
Bst4CI	ACNGT	3 cut(s)	60, 227, 386
BstAFI	CTTAAG	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	581, 585
BstDEI	CTNAG	5 cut(s)	63, 131, 255, 260, 588
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	5 cut(s)	81, 403, 409, 680, 697
BstKTI	GATC	4 cut(s)	153, 330, 427, 679
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	4 cut(s)	150, 327, 424, 676
BstNSI	RCATGY	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	5 cut(s)	81, 403, 409, 680, 697
BtsIMutI	CAGTG	2 cut(s)	139, 391
Cac8I	GCNNGC	2 cut(s)	581, 585
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	373
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	3 cut(s)	350, 580, 688
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	5 cut(s)	63, 131, 255, 260, 588
DpnI	GATC	4 cut(s)	152, 329, 426, 678
DpnII	GATC	4 cut(s)	150, 327, 424, 676
Ecl136II	GAGCTC	2 cut(s)	73, 465
Eco24I	GRGCYC	2 cut(s)	75, 467
Eco53kI	GAGCTC	2 cut(s)	73, 465
EcoICRI	GAGCTC	2 cut(s)	73, 465
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	2 cut(s)	75, 467
FaeI	CATG	3 cut(s)	353, 583, 691
FatI	CATG	3 cut(s)	349, 579, 687
FauNDI	CATATG	1 cut(s)	622
FbaI	TGATCA	1 cut(s)	150
FokI	GGATG	5 cut(s)	68, 410, 416, 667, 704
FriOI	GRGCYC	2 cut(s)	75, 467
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	353, 583, 691
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	1 cut(s)	10
HpaI	GTTAAC	1 cut(s)	618
HphI	GGTGA	3 cut(s)	127, 467, 529
Hpy166II	GTNNAC	2 cut(s)	284, 618
Hpy188I	TCNGA	3 cut(s)	66, 159, 610
Hpy8I	GTNNAC	2 cut(s)	284, 618
HpyAV	CCTTC	3 cut(s)	61, 96, 694
HpyCH4III	ACNGT	3 cut(s)	60, 227, 386
HpyCH4IV	ACGT	1 cut(s)	614
HpyCH4V	TGCA	3 cut(s)	164, 548, 583
HpyF3I	CTNAG	5 cut(s)	63, 131, 255, 260, 588
HpySE526I	ACGT	1 cut(s)	614
Hsp92II	CATG	3 cut(s)	353, 583, 691
Ksp22I	TGATCA	1 cut(s)	150
KspAI	GTTAAC	1 cut(s)	618
Kzo9I	GATC	4 cut(s)	150, 327, 424, 676
LmnI	GCTCC	2 cut(s)	34, 70
LpnPI	CCDG	3 cut(s)	20, 45, 389
LweI	GCATC	1 cut(s)	557
MaeII	ACGT	1 cut(s)	614
MalI	GATC	4 cut(s)	152, 329, 426, 678
MboI	GATC	4 cut(s)	150, 327, 424, 676
MboII	GAAGA	2 cut(s)	337, 716
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	2 cut(s)	75, 467
MluCI	AATT	2 cut(s)	213, 718
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	2 cut(s)	87, 617
MspCI	CTTAAG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	446
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	4 cut(s)	150, 327, 424, 676
NlaIII	CATG	3 cut(s)	353, 583, 691
NlaIV	GGNNCC	1 cut(s)	594
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	583
NspV	TTCGAA	1 cut(s)	305
PaeI	GCATGC	1 cut(s)	583
PctI	GAATGC	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	10
Psp124BI	GAGCTC	2 cut(s)	75, 467
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SacI	GAGCTC	2 cut(s)	75, 467
SaqAI	TTAA	2 cut(s)	87, 617
Sau3AI	GATC	4 cut(s)	150, 327, 424, 676
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	2 cut(s)	75, 467
SfaNI	GCATC	1 cut(s)	557
SfuI	TTCGAA	1 cut(s)	305
SmlI	CTYRAG	5 cut(s)	86, 179, 332, 434, 500
SmoI	CTYRAG	5 cut(s)	86, 179, 332, 434, 500
SphI	GCATGC	1 cut(s)	583
Sse9I	AATT	2 cut(s)	213, 718
SspI	AATATT	1 cut(s)	94
SstI	GAGCTC	2 cut(s)	75, 467
TaaI	ACNGT	3 cut(s)	60, 227, 386
TaiI	ACGT	1 cut(s)	617
TaqI	TCGA	2 cut(s)	97, 305
TasI	AATT	2 cut(s)	213, 718
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	87, 617
Tru9I	TTAA	2 cut(s)	87, 617
TscAI	CASTG	2 cut(s)	139, 391
TspDTI	ATGAA	2 cut(s)	284, 676
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	2 cut(s)	139, 391
Vha464I	CTTAAG	1 cut(s)	86
XagI	CCTNNNNNAGG	1 cut(s)	335
XceI	RCATGY	1 cut(s)	583
XmnI	GAANNNNTTC	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.