Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002637

Physical Location & Seq

Genomic Coordinates Reverse (-)

62383755 .. 62384635

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAGCAGGACTACAATGAGGTGACTTCAAATACACAGACTCTTTCCGAAATAAAGAATTTGTTCAAAAAGATGCACTCATTGCCAGAAGTGACAAGGCACATAAATCTTGCTAAGCATCTGATGACTTTCACGTCGAAGATATCATTTCGTGGACTACTTGACGTGGAACAAACAATCGTTGAGACTGAGAGTTTTGACATATGCTTAGATTACATTGAAGAAATGATGCATAAGCAGGAGCCTCTTGCAAGTGCATGGCTGAGAGTTAAGCGTGCCTTACAACTTGTCATTGAACACAGTGACACAGCCAACCCCAATGACATTGACTATGTCTTTTCTGGATATGCACCTCTTAGCATTCGCCTTGTTCAGCATGCTATTCAATCTGGATGCCGTCCGATTGAAGAAACTCTAAAGCTGTTACCCGGACCACATTCAGAAACAAAAAGAGGCCCGTTCTCAAGCAGCGCATCATTTGACAATTTTCAGGGGGCAGAAACCAATGTAGACAAGGTAGATGATGGGAAGCGCTCCCTTGTACTTGTCATCTTCATTAGAGGTGTAACGTTTGCAGAGATTTCCGCCCTTCGGTTTCTTAGTTCTCGGAAAGGGATGGCATATAATTTCATAGTTGGGACAACGAAAATGGTTAGTGGCCATAGCTTGACAGAAACATTTGTGGGGAAGATGGAGGACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0012505 GO:0016020 GO:0030897 GO:0031410 GO:0031982 GO:0032991 GO:0033263 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Sec1

Protein Analysis

234

Amino Acids

26.39

Weight (kDa)

6.25

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec1	PF00995	2 - 83	4.6e-08	Sec1 family
Sec1	PF00995	95 - 224	2.5e-16	Sec1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54860 AT3G54860
fragaria_vesca	FvH4_5g35750 FvH4_7g18830
malus_domestica	MD01G1103400.v1.1 MD07G1170300.v1.1
prunus_persica	Prupe.2G209100_v2.0.a1
pyrus_communis	pycom01g12990 pycom07g16400 pycom07g16410 pycom07g16420
rosa_chinensis	RchiOBHm_Chr1g0362641 RchiOBHm_Chr6g0252451 RchiOBHm_Chr7g0237381 RchiOBHm_Chr7g0237391 RchiOBHm_Chr7g0237401
rosa_laevigata	RLG00000001008 RLG00000027632
rosa_multiflora	Rmu_co8478059.1_g000001 Rmu_sc0000046.1_g000031 Rmu_sc0000046.1_g000032 Rmu_sc0002923.1_g000033 Rmu_sc0002923.1_g000034 Rmu_sc0032175.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293890
rosa_rugosa	Rorug01G0300200.1 Rorug07G0302900 Rorug07G0302900
rosa_samantha	Rh1AG308800 Rh1BG272600 Rh1CG289900 Rh1DG303100 Rh7AG460300 Rh7AG460400 Rh7BG430100 Rh7CG477600 Rh7CG477700 Rh7DG446900
rosa_wichuraiana	Rw1G027450 Rw7G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	510
AciI	CCGC	1 cut(s)	585
AclI	AACGTT	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	58
AfaI	GTAC	1 cut(s)	543
AfeI	AGCGCT	1 cut(s)	533
AfiI	CCNNNNNNNGG	1 cut(s)	591
AgsI	TTSAA	6 cut(s)	30, 67, 221, 296, 386, 407
AjiI	CACGTC	2 cut(s)	135, 166
AluBI	AGCT	2 cut(s)	421, 666
AluI	AGCT	2 cut(s)	421, 666
Alw26I	GTCTC	1 cut(s)	179
Aor51HI	AGCGCT	1 cut(s)	533
AoxI	GGCC	2 cut(s)	454, 658
ApeKI	GCWGC	1 cut(s)	468
ApoI	RAATTY	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	62
AspLEI	GCGC	2 cut(s)	473, 534
AspS9I	GGNCC	3 cut(s)	431, 455, 697
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	2 cut(s)	431, 697
BalI	TGGCCA	1 cut(s)	660
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	480
BccI	CCATC	3 cut(s)	518, 610, 685
BceAI	ACGGC	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	535
BisI	GCNGC	1 cut(s)	469
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	2 cut(s)	431, 697
BmgBI	CACGTC	2 cut(s)	135, 166
BmgT120I	GGNCC	3 cut(s)	431, 455, 697
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	5 cut(s)	63, 127, 219, 383, 482
Bpu1102I	GCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	448
BpuMI	CCSGG	1 cut(s)	429
BsaXI	ACNNNNNCTCC	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse3DI	GCAATG	1 cut(s)	80
BseGI	GGATG	2 cut(s)	398, 621
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseMI	GCAATG	1 cut(s)	80
BseMII	CTCAG	2 cut(s)	180, 254
BseXI	GCAGC	1 cut(s)	480
BshFI	GGCC	2 cut(s)	456, 660
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	1 cut(s)	591
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	652
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	2 cut(s)	456, 660
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	585
BspANI	GGCC	2 cut(s)	456, 660
BspCNI	CTCAG	2 cut(s)	181, 255
BspLI	GGNNCC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	276, 378
BstDEI	CTNAG	6 cut(s)	114, 189, 208, 263, 356, 599
BstF5I	GGATG	2 cut(s)	398, 621
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	2 cut(s)	473, 534
BstMAI	GTCTC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	427
BstV1I	GCAGC	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	456, 660
BtrI	CACGTC	2 cut(s)	135, 166
BtsCI	GGATG	2 cut(s)	398, 621
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	276, 378
CfoI	GCGC	2 cut(s)	473, 534
Cfr13I	GGNCC	3 cut(s)	431, 455, 697
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	2 cut(s)	258, 377
CviJI	RGCY	7 cut(s)	244, 262, 311, 421, 456, 660, 666
CviKI_1	RGCY	7 cut(s)	244, 262, 311, 421, 456, 660, 666
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	6 cut(s)	114, 189, 208, 263, 356, 599
DrdI	GACNNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	658
EciI	GGCGGA	1 cut(s)	574
Eco32I	GATATC	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	431, 697
Eco47III	AGCGCT	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	697
EcoRV	GATATC	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	234
FaeI	CATG	2 cut(s)	261, 380
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	2 cut(s)	257, 376
FauNDI	CATATG	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	1 cut(s)	469
FokI	GGATG	2 cut(s)	405, 628
Fsp4HI	GCNGC	1 cut(s)	469
GlaI	GCGC	2 cut(s)	472, 533
GluI	GCNGC	1 cut(s)	469
HaeII	RGCGCY	1 cut(s)	535
HaeIII	GGCC	2 cut(s)	456, 660
HapII	CCGG	1 cut(s)	429
HhaI	GCGC	2 cut(s)	473, 534
Hin1II	CATG	2 cut(s)	261, 380
Hin6I	GCGC	2 cut(s)	471, 532
HinP1I	GCGC	2 cut(s)	471, 532
HinfI	GANTC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	155, 511
Hpy188I	TCNGA	5 cut(s)	49, 123, 402, 442, 609
Hpy188III	TCNNGA	2 cut(s)	342, 390
Hpy8I	GTNNAC	2 cut(s)	155, 511
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	599
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	3 cut(s)	134, 165, 569
HpyCH4V	TGCA	6 cut(s)	76, 232, 251, 257, 350, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	6 cut(s)	114, 189, 208, 263, 356, 599
HpySE526I	ACGT	3 cut(s)	134, 165, 569
Hsp92II	CATG	2 cut(s)	261, 380
HspAI	GCGC	2 cut(s)	471, 532
LmnI	GCTCC	2 cut(s)	241, 539
LpnPI	CCDG	6 cut(s)	99, 224, 327, 375, 442, 476
Lsp1109I	GCAGC	1 cut(s)	480
LweI	GCATC	5 cut(s)	63, 127, 219, 383, 482
MaeII	ACGT	3 cut(s)	134, 165, 569
MaeIII	GTNAC	5 cut(s)	22, 91, 302, 423, 565
MboII	GAAGA	5 cut(s)	151, 233, 419, 544, 700
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	3 cut(s)	58, 484, 625
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	6 cut(s)	13, 255, 363, 446, 554, 688
Mox20I	TGGCCA	1 cut(s)	660
Mph1103I	ATGCAT	1 cut(s)	234
MroXI	GAANNNNTTC	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	660
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	82
NciI	CCSGG	1 cut(s)	429
NdeI	CATATG	1 cut(s)	203
NlaIII	CATG	2 cut(s)	261, 380
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	3 cut(s)	22, 91, 302
NsiI	ATGCAT	1 cut(s)	234
NspI	RCATGY	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	380
PctI	GAATGC	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	470
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	697
Psp1406I	AACGTT	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	697
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	3 cut(s)	431, 455, 697
PspPPI	RGGWCCY	1 cut(s)	697
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	469
Sau96I	GGNCC	3 cut(s)	431, 455, 697
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	429
SfaNI	GCATC	5 cut(s)	63, 127, 219, 383, 482
SinI	GGWCC	2 cut(s)	431, 697
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	3 cut(s)	58, 484, 625
SsiI	CCGC	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	3 cut(s)	137, 168, 572
TaqI	TCGA	1 cut(s)	137
TasI	AATT	3 cut(s)	58, 484, 625
TatI	WGTACW	1 cut(s)	541
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	3 cut(s)	22, 91, 302
TseI	GCWGC	1 cut(s)	468
Tsp45I	GTSAC	3 cut(s)	22, 91, 302
TspDTI	ATGAA	3 cut(s)	17, 544, 619
TspRI	CASTG	1 cut(s)	307
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	431, 697
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	510
XmnI	GAANNNNTTC	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.