Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004349

Physical Location & Seq

Genomic Coordinates Reverse (-)

31031466 .. 31034894

Gene Structure 3429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1238300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGACGACGATGGAGGCTCTGGTGTGCCGGAAACTGGGCGACCCGACACAACCCATATCAGACGGAGGTGCGGAGAAAGCGATCGTGGTGGAGAAGAACCACCCAATTCCGGAATTGGGTTCGCCGACATCGGTGAGAGTGAGAGTGAAAGCTACGAGCTTGAACTACGCCAATTATCTGCAGATACTGGGCAAGTACCAGGAGAAGCCGCCCCTCCCTTTCATCCCAGGCTCCGACTACTCCGGGACCGTCGACGCCGTTGGACCCGCCGTATCCAAGTTCAAAGTCGGCGACCCTGTTTGCTCTTTTGCCGCCCTCGGCTCTTTCGCCCAGTTCATCGTCGCCGATCAGAAAGAGCTGTTTGGAGTGCCGGAGGGGTGTGATCTGGTGGCTGCCGGTGCACTGCCTGTTGCATTTGGGACCTCGCACGTGGCACTTGTTCATAGGGCCAATTTGTCCTCCGGTCAAGTATTGCTGGTTCTTGGTGCAGCTGGAGGAGTTGGCCTAGCGGCCATACAGATTGGCAAGGTTGTGGGAGCCATTGTTATCGCCGTAGCTAGGGGAGCTGAGAAGGTGGAGTATTTGAAGCAGTTGGGGGTTGATCATGTGGTGGACTCGAGCAGCGAAAATGTTATCCAAAGTGTGAAGGATTTCTTGAAATCCCGAAAGCTTAAAGGGGTTGACGTTTTGTATGATCCGGTTGGAGGCAAGCTTACGAAAGAGGCCATGAAGGTTTTGAGTTGGGGAGCCAACATTTTGGTCATAGGCTTTGCAAGTGGAGAGGTCCCTGTCATTCCTGCAAATATTGCGCTTGTTAAGAACTGGACGGTGCATGGACTTTACTGGGGTAGCTACAAAATACATCGACCAGGTATTCTTGAAGAATCGCTCAAGGAGCTACTGTCCTGGGTGGCAAGAGGGTTGATCAGCATCCACATTTCTCATGCTTATCGCCTGCCCGAGGCCAATCTCGCTTTCTCTGCCATCAAAGATAGGAAAGTCATTGGAAAAGTGATGCTTGTTCTCGATGACGAGAGAAGTGCAAGATCAAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

353

Amino Acids

37.39

Weight (kDa)

9.04

Isoelectric Point (pI)

23.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	42 - 124	6.2e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	166 - 294	2.9e-23	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	198 - 339	4.6e-15	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56460
fragaria_vesca	FvH4_7g26290 FvH4_7g26290 FvH4_7g26290 FvH4_7g26290
malus_domestica	MD00G1044900.v1.1 MD07G1238300.v1.1 MD11G1140100.v1.1
pyrus_communis	pycom07g21430
rosa_chinensis	RchiOBHm_Chr1g0372751 RchiOBHm_Chr5g0036601
rosa_laevigata	RLG00000026875
rosa_multiflora	Rmu_sc0003277.1_g000001 Rmu_sc0003804.1_g000038 Rmu_sc0008708.1_g000010 Rmu_sc0009717.1_g000007
rosa_roxburghii	Rroxscaffold_4G00284710
rosa_rugosa	Rorug01G0374100 Rorug02G0272800 Rorug04G0441100
rosa_samantha	Rh1AG382800 Rh1BG346300 Rh1CG359600 Rh1DG377400 Rh2AG155100 Rh2DG160700 Rh5BG251000 Rh5DG126800 Rh5DG259000
rosa_wichuraiana	Rw1G033690 Rw2G012370 Rw5G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	252
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	5 cut(s)	71, 209, 267, 312, 509
AclWI	GGATC	1 cut(s)	689
AcoI	YGGCCR	1 cut(s)	510
AcvI	CACGTG	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	6 cut(s)	34, 109, 116, 558, 704, 961
AgsI	TTSAA	5 cut(s)	163, 283, 586, 658, 881
AjnI	CCWGG	4 cut(s)	198, 226, 868, 905
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
Alw21I	GWGCWC	1 cut(s)	403
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	1 cut(s)	689
AlwNI	CAGNNNCTG	1 cut(s)	187
Ama87I	CYCGRG	2 cut(s)	616, 959
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	5 cut(s)	447, 502, 510, 723, 963
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	3 cut(s)	392, 488, 621
Asp700I	GAANNNNTTC	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	811
AspS9I	GGNCC	5 cut(s)	246, 263, 420, 447, 784
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	2 cut(s)	616, 959
AvaII	GGWCC	4 cut(s)	246, 263, 420, 784
BaeGI	GKGCMC	1 cut(s)	403
BbrPI	CACGTG	1 cut(s)	430
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	3 cut(s)	379, 500, 633
BccI	CCATC	2 cut(s)	4, 992
BceAI	ACGGC	3 cut(s)	242, 254, 536
BcgI	CGANNNNNNTGC	2 cut(s)	1022, 1056
BciT130I	CCWGG	4 cut(s)	200, 228, 870, 907
BciVI	GTATCC	1 cut(s)	283
BclI	TGATCA	2 cut(s)	601, 924
BcnI	CCSGG	1 cut(s)	244
BfaI	CTAG	2 cut(s)	506, 558
BfmI	CTRYAG	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	6 cut(s)	209, 312, 393, 489, 510, 622
BlsI	GCNGC	6 cut(s)	210, 313, 394, 490, 511, 623
Bme1390I	CCNGG	5 cut(s)	200, 228, 244, 870, 907
Bme18I	GGWCC	4 cut(s)	246, 263, 420, 784
BmeT110I	CYCGRG	2 cut(s)	616, 959
BmgT120I	GGNCC	5 cut(s)	246, 263, 420, 447, 784
BmiI	GGNNCC	7 cut(s)	232, 247, 265, 421, 538, 748, 786
BmrFI	CCNGG	5 cut(s)	200, 228, 244, 870, 907
BmrI	ACTGGG	4 cut(s)	44, 197, 325, 853
BmsI	GCATC	2 cut(s)	939, 1005
BmuI	ACTGGG	4 cut(s)	44, 197, 325, 853
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	875
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	430
BsaBI	GATNNNNATC	1 cut(s)	929
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	4 cut(s)	226, 316, 906, 960
BsaWI	WCCGGW	3 cut(s)	109, 461, 697
BsaXI	ACNNNNNCTCC	4 cut(s)	528, 558, 887, 917
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 109, 116, 558, 704, 961
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	5 cut(s)	39, 192, 331, 827, 848
Bse8I	GATNNNNATC	1 cut(s)	929
BseAI	TCCGGA	1 cut(s)	109
BseBI	CCWGG	4 cut(s)	200, 228, 870, 907
BseDI	CCNNGG	4 cut(s)	226, 316, 906, 960
BseGI	GGATG	2 cut(s)	222, 930
BseJI	GATNNNNATC	1 cut(s)	929
BseLI	CCNNNNNNNGG	6 cut(s)	34, 109, 116, 558, 704, 961
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	5 cut(s)	39, 192, 331, 827, 848
BseRI	GAGGAG	1 cut(s)	510
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	3 cut(s)	379, 500, 633
BsgI	GTGCAG	1 cut(s)	507
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	5 cut(s)	449, 504, 512, 725, 965
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	2 cut(s)	616, 959
BsiSI	CCGG	7 cut(s)	28, 110, 243, 371, 396, 462, 698
BslFI	GGGAC	3 cut(s)	259, 433, 770
BslI	CCNNNNNNNGG	6 cut(s)	34, 109, 116, 558, 704, 961
BsmFI	GGGAC	3 cut(s)	259, 433, 770
BsnI	GGCC	5 cut(s)	449, 504, 512, 725, 965
BsoBI	CYCGRG	2 cut(s)	616, 959
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	7 cut(s)	81, 346, 382, 601, 694, 924, 1046
BspACI	CCGC	5 cut(s)	71, 209, 267, 312, 509
BspANI	GGCC	5 cut(s)	449, 504, 512, 725, 965
BspCNI	CTCAG	1 cut(s)	559
BspEI	TCCGGA	1 cut(s)	109
BspLI	GGNNCC	7 cut(s)	232, 247, 265, 421, 538, 748, 786
BspMAI	CTGCAG	1 cut(s)	183
BspPI	GGATC	1 cut(s)	689
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	5 cut(s)	39, 192, 331, 827, 848
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	4 cut(s)	226, 316, 906, 960
BssMI	GATC	7 cut(s)	81, 346, 382, 601, 694, 924, 1046
BssNI	GRCGYC	1 cut(s)	255
Bst2UI	CCWGG	4 cut(s)	200, 228, 870, 907
Bst4CI	ACNGT	3 cut(s)	250, 829, 903
BstACI	GRCGYC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstBAI	YACGTR	1 cut(s)	430
BstC8I	GCNNGC	2 cut(s)	710, 956
BstDEI	CTNAG	1 cut(s)	567
BstENI	CCTNNNNNAGG	1 cut(s)	959
BstF5I	GGATG	2 cut(s)	222, 930
BstHHI	GCGC	1 cut(s)	811
BstKTI	GATC	7 cut(s)	84, 349, 385, 604, 697, 927, 1049
BstMBI	GATC	7 cut(s)	81, 346, 382, 601, 694, 924, 1046
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 398, 563, 806, 895, 971, 980
BstNI	CCWGG	4 cut(s)	200, 228, 870, 907
BstSCI	CCNGG	5 cut(s)	198, 226, 242, 868, 905
BstSFI	CTRYAG	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	3 cut(s)	379, 500, 633
BstXI	CCANNNNNNTGG	1 cut(s)	757
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	5 cut(s)	449, 504, 512, 725, 965
BtsCI	GGATG	2 cut(s)	222, 930
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	2 cut(s)	710, 956
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	811
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	5 cut(s)	246, 263, 420, 447, 784
CseI	GACGC	1 cut(s)	263
CsiI	ACCWGGT	1 cut(s)	868
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	4 cut(s)	605, 727, 833, 944
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	7 cut(s)	83, 348, 384, 603, 696, 926, 1048
DpnII	GATC	7 cut(s)	81, 346, 382, 601, 694, 924, 1046
EaeI	YGGCCR	1 cut(s)	510
Eco47I	GGWCC	4 cut(s)	246, 263, 420, 784
Eco72I	CACGTG	1 cut(s)	430
Eco88I	CYCGRG	2 cut(s)	616, 959
EcoNI	CCTNNNNNAGG	1 cut(s)	959
EcoO109I	RGGNCCY	2 cut(s)	420, 784
EcoRII	CCWGG	4 cut(s)	198, 226, 868, 905
FaeI	CATG	4 cut(s)	608, 730, 836, 947
FaiI	YATR	9 cut(s)	56, 444, 515, 606, 693, 728, 764, 834, 945
FalI	AAGNNNNNCTT	4 cut(s)	638, 670, 1002, 1034
FaqI	GGGAC	3 cut(s)	259, 433, 770
FatI	CATG	4 cut(s)	604, 726, 832, 943
FauI	CCCGC	1 cut(s)	274
FbaI	TGATCA	2 cut(s)	601, 924
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	6 cut(s)	209, 312, 393, 489, 510, 622
FokI	GGATG	2 cut(s)	209, 917
Fsp4HI	GCNGC	6 cut(s)	209, 312, 393, 489, 510, 622
FspBI	CTAG	2 cut(s)	506, 558
GlaI	GCGC	1 cut(s)	810
GluI	GCNGC	6 cut(s)	209, 312, 393, 489, 510, 622
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	5 cut(s)	449, 504, 512, 725, 965
HapII	CCGG	7 cut(s)	28, 110, 243, 371, 396, 462, 698
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	811
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	608, 730, 836, 947
Hin6I	GCGC	1 cut(s)	809
HinP1I	GCGC	1 cut(s)	809
HincII	GTYRAC	2 cut(s)	253, 682
HindII	GTYRAC	2 cut(s)	253, 682
HindIII	AAGCTT	3 cut(s)	668, 710, 1052
HinfI	GANTC	2 cut(s)	614, 884
HpaII	CCGG	7 cut(s)	28, 110, 243, 371, 396, 462, 698
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	4 cut(s)	253, 401, 613, 682
Hpy188I	TCNGA	3 cut(s)	61, 235, 351
Hpy188III	TCNNGA	5 cut(s)	110, 655, 663, 878, 1025
Hpy8I	GTNNAC	4 cut(s)	253, 401, 613, 682
Hpy99I	CGWCG	4 cut(s)	10, 254, 257, 344
HpyAV	CCTTC	3 cut(s)	565, 640, 724
HpyCH4III	ACNGT	3 cut(s)	250, 829, 903
HpyCH4IV	ACGT	2 cut(s)	429, 684
HpyCH4V	TGCA	8 cut(s)	181, 401, 413, 488, 773, 800, 832, 1043
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 398, 563, 806, 895, 971, 980
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	2 cut(s)	429, 684
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	608, 730, 836, 947
HspAI	GCGC	1 cut(s)	809
Kpn2I	TCCGGA	1 cut(s)	109
Ksp22I	TGATCA	2 cut(s)	601, 924
Kzo9I	GATC	7 cut(s)	81, 346, 382, 601, 694, 924, 1046
LmnI	GCTCC	5 cut(s)	236, 536, 563, 746, 895
Lsp1109I	GCAGC	3 cut(s)	379, 500, 633
LweI	GCATC	2 cut(s)	939, 1005
MabI	ACCWGGT	1 cut(s)	868
MaeI	CTAG	2 cut(s)	506, 558
MaeII	ACGT	2 cut(s)	429, 684
MalI	GATC	7 cut(s)	83, 348, 384, 603, 696, 926, 1048
MboI	GATC	7 cut(s)	81, 346, 382, 601, 694, 924, 1046
MboII	GAAGA	2 cut(s)	106, 893
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	4 cut(s)	105, 113, 172, 451
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	3 cut(s)	241, 258, 682
MroI	TCCGGA	1 cut(s)	109
MroXI	GAANNNNTTC	1 cut(s)	650
MseI	TTAA	3 cut(s)	672, 816, 1057
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	7 cut(s)	28, 110, 243, 371, 396, 462, 698
MspR9I	CCNGG	5 cut(s)	200, 228, 244, 870, 907
MvaI	CCWGG	4 cut(s)	200, 228, 870, 907
MwoI	GCNNNNNNNGC	7 cut(s)	77, 398, 563, 806, 895, 971, 980
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	7 cut(s)	81, 346, 382, 601, 694, 924, 1046
NlaIII	CATG	4 cut(s)	608, 730, 836, 947
NlaIV	GGNNCC	7 cut(s)	232, 247, 265, 421, 538, 748, 786
NmeAIII	GCCGAG	1 cut(s)	297
PaeR7I	CTCGAG	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	1 cut(s)	884
PfoI	TCCNGGA	1 cut(s)	242
PkrI	GCNGC	6 cut(s)	210, 313, 394, 490, 511, 623
Ple19I	CGATCG	1 cut(s)	84
PleI	GAGTC	1 cut(s)	608
PmaCI	CACGTG	1 cut(s)	430
PmlI	CACGTG	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	608
Ppu21I	YACGTR	1 cut(s)	430
PpuMI	RGGWCCY	2 cut(s)	420, 784
Psp5II	RGGWCCY	2 cut(s)	420, 784
Psp6I	CCWGG	4 cut(s)	198, 226, 868, 905
PspCI	CACGTG	1 cut(s)	430
PspGI	CCWGG	4 cut(s)	198, 226, 868, 905
PspN4I	GGNNCC	7 cut(s)	232, 247, 265, 421, 538, 748, 786
PspPI	GGNCC	5 cut(s)	246, 263, 420, 447, 784
PspPPI	RGGWCCY	2 cut(s)	420, 784
PspXI	VCTCGAGB	1 cut(s)	616
PsrI	GAACNNNNNNTAC	2 cut(s)	462, 494
PstI	CTGCAG	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	187
PvuI	CGATCG	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	3 cut(s)	672, 816, 1057
SatI	GCNGC	6 cut(s)	209, 312, 393, 489, 510, 622
Sau3AI	GATC	7 cut(s)	81, 346, 382, 601, 694, 924, 1046
Sau96I	GGNCC	5 cut(s)	246, 263, 420, 447, 784
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	5 cut(s)	200, 228, 244, 870, 907
SduI	GDGCHC	1 cut(s)	403
SexAI	ACCWGGT	1 cut(s)	868
SfaNI	GCATC	2 cut(s)	939, 1005
SfcI	CTRYAG	1 cut(s)	179
Sfr274I	CTCGAG	1 cut(s)	616
SgrDI	CGTCGACG	1 cut(s)	251
SinI	GGWCC	4 cut(s)	246, 263, 420, 784
SlaI	CTCGAG	1 cut(s)	616
SmlI	CTYRAG	2 cut(s)	616, 890
SmoI	CTYRAG	2 cut(s)	616, 890
Sse9I	AATT	4 cut(s)	105, 113, 172, 451
SsiI	CCGC	5 cut(s)	71, 209, 267, 312, 509
SspI	AATATT	1 cut(s)	805
SspMI	CTAG	2 cut(s)	506, 558
StyD4I	CCNGG	5 cut(s)	198, 226, 242, 868, 905
TaaI	ACNGT	3 cut(s)	250, 829, 903
TaiI	ACGT	2 cut(s)	432, 687
TaqI	TCGA	4 cut(s)	252, 617, 865, 1026
TasI	AATT	4 cut(s)	105, 113, 172, 451
TauI	GCSGC	3 cut(s)	211, 314, 512
TfiI	GAWTC	1 cut(s)	884
Tru1I	TTAA	3 cut(s)	672, 816, 1057
Tru9I	TTAA	3 cut(s)	672, 816, 1057
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	3 cut(s)	392, 488, 621
TspDTI	ATGAA	4 cut(s)	211, 325, 431, 743
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	408
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	4 cut(s)	246, 263, 420, 784
XagI	CCTNNNNNAGG	1 cut(s)	959
XhoI	CTCGAG	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	2 cut(s)	506, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.