Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004349

Physical Location & Seq

Genomic Coordinates Reverse (-)

12871117 .. 12875631

Gene Structure 4515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTGGGTGCAGAACACCACAAAGAGTGCCACGGCACTAACAGAATCCAAGACACTGCCAAAACAGATCCAGGGATTCAAGAGGTCGGTCACAACTCACAATCCACAACCAAAAGACCAAAACTTGATAAACAGATACTTGGCAAGTACCAAGAGAAGCTGCCTCTGCCTTTCATCTCCGGCTCCGATTACTCCGATGTCGTCGACACCGTCGGCCCCGCCATCTACAAGTTTAAAGTCGGCGATGCTGTTTGCTCCGTTGCTGCCCTCGGGTCCTTTTCTCAGTTCATCATCGTCGATCAGTCACTTCTGTTTGGAGTCCCGAAAGGGTGTGGTCTGGTGGCTGCTGGTGCACTGCCGGTTGCATTTGGGACCTCTCATGTGGCTCTTCTTCACCAGGCCAATTTCAGCTCTGGTCAAGAATTGCTGGTGCTTGGTGCAGCTGGAGGTGGTGGACTTGTGATGGTGCAGATTGGAAAGGTTGTTGGAGCTGTTGTTATTGCAGTAGCTAGGGGAGCTGAGAAGGTGCAGTATTTGAAGTCATTGATCATGTGGTGGACTCCAGCAGTCAAAGTATTATCCAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

196

Amino Acids

20.55

Weight (kDa)

8.96

Isoelectric Point (pI)

22.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56460
fragaria_vesca	FvH4_7g26290 FvH4_7g26290 FvH4_7g26290 FvH4_7g26290
malus_domestica	MD00G1044900.v1.1 MD07G1238300.v1.1 MD11G1140100.v1.1
pyrus_communis	pycom07g21430
rosa_chinensis	RchiOBHm_Chr1g0372751 RchiOBHm_Chr5g0036601
rosa_laevigata	RLG00000026875
rosa_multiflora	Rmu_sc0003277.1_g000001 Rmu_sc0003804.1_g000038 Rmu_sc0008708.1_g000010 Rmu_sc0009717.1_g000007
rosa_roxburghii	Rroxscaffold_4G00284710
rosa_rugosa	Rorug01G0374100 Rorug02G0272800 Rorug04G0441100
rosa_samantha	Rh1AG382800 Rh1BG346300 Rh1CG359600 Rh1DG377400 Rh2AG155100 Rh2DG160700 Rh5BG251000 Rh5DG126800 Rh5DG259000
rosa_wichuraiana	Rw1G033690 Rw2G012370 Rw5G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	80, 538
AjnI	CCWGG	2 cut(s)	70, 396
AluBI	AGCT	6 cut(s)	160, 411, 443, 491, 509, 518
AluI	AGCT	6 cut(s)	160, 411, 443, 491, 509, 518
Alw21I	GWGCWC	1 cut(s)	355
Alw44I	GTGCAC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	214, 399
ApaLI	GTGCAC	1 cut(s)	351
ApeKI	GCWGC	4 cut(s)	160, 263, 344, 440
AspS9I	GGNCC	3 cut(s)	215, 273, 372
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	273, 372
BaeGI	GKGCMC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	4 cut(s)	147, 250, 331, 452
BccI	CCATC	2 cut(s)	230, 457
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	2 cut(s)	72, 398
BclI	TGATCA	1 cut(s)	546
BfaI	CTAG	1 cut(s)	510
BisI	GCNGC	4 cut(s)	161, 264, 345, 441
BlsI	GCNGC	4 cut(s)	162, 265, 346, 442
Bme1390I	CCNGG	2 cut(s)	72, 398
Bme18I	GGWCC	2 cut(s)	273, 372
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	215, 273, 372
BmiI	GGNNCC	4 cut(s)	184, 217, 274, 373
BmrFI	CCNGG	2 cut(s)	72, 398
BmsI	GCATC	1 cut(s)	235
BpmI	CTGGAG	2 cut(s)	465, 546
BsaJI	CCNNGG	3 cut(s)	31, 71, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bse118I	RCCGGY	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	72, 398
BseDI	CCNNGG	3 cut(s)	31, 71, 268
BseMII	CTCAG	2 cut(s)	296, 510
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	4 cut(s)	147, 250, 331, 452
BsgI	GTGCAG	4 cut(s)	30, 459, 488, 548
BshFI	GGCC	2 cut(s)	216, 401
BsiHKAI	GWGCWC	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	180, 359
BslFI	GGGAC	2 cut(s)	305, 385
BsmFI	GGGAC	2 cut(s)	305, 385
BsnI	GGCC	2 cut(s)	216, 401
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	67, 298, 546
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	2 cut(s)	216, 401
BspCNI	CTCAG	2 cut(s)	295, 511
BspLI	GGNNCC	4 cut(s)	184, 217, 274, 373
BspPI	GGATC	1 cut(s)	62
BspQI	GCTCTTC	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	3 cut(s)	31, 71, 268
BssMI	GATC	3 cut(s)	67, 298, 546
Bst2UI	CCWGG	2 cut(s)	72, 398
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	282, 519
BstDSI	CCRYGG	1 cut(s)	31
BstKTI	GATC	3 cut(s)	70, 301, 549
BstMBI	GATC	3 cut(s)	67, 298, 546
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 350, 515
BstNI	CCWGG	2 cut(s)	72, 398
BstSCI	CCNGG	2 cut(s)	70, 396
BstSLI	GKGCMC	1 cut(s)	355
BstV1I	GCAGC	4 cut(s)	147, 250, 331, 452
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	216, 401
BtgI	CCRYGG	1 cut(s)	31
BtgZI	GCGATG	1 cut(s)	258
BtsI	GCAGTG	2 cut(s)	54, 353
BtsIMutI	CAGTG	2 cut(s)	54, 353
Cfr10I	RCCGGY	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	215, 273, 372
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	2 cut(s)	380, 550
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	282, 519
DpnI	GATC	3 cut(s)	69, 300, 548
DpnII	GATC	3 cut(s)	67, 298, 546
DraI	TTTAAA	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco47I	GGWCC	2 cut(s)	273, 372
Eco88I	CYCGRG	1 cut(s)	269
EcoO109I	RGGNCCY	2 cut(s)	273, 372
EcoRII	CCWGG	2 cut(s)	70, 396
FaeI	CATG	2 cut(s)	383, 553
FaiI	YATR	2 cut(s)	381, 551
FaqI	GGGAC	2 cut(s)	305, 385
FatI	CATG	2 cut(s)	379, 549
FauI	CCCGC	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	546
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	161, 264, 345, 441
Fsp4HI	GCNGC	4 cut(s)	161, 264, 345, 441
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	4 cut(s)	161, 264, 345, 441
GsuI	CTGGAG	2 cut(s)	465, 546
HaeIII	GGCC	2 cut(s)	216, 401
HapII	CCGG	2 cut(s)	180, 359
Hin1II	CATG	2 cut(s)	383, 553
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	4 cut(s)	45, 76, 318, 559
HpaII	CCGG	2 cut(s)	180, 359
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	4 cut(s)	205, 353, 455, 558
Hpy188I	TCNGA	2 cut(s)	187, 196
Hpy188III	TCNNGA	3 cut(s)	80, 322, 419
Hpy8I	GTNNAC	4 cut(s)	205, 353, 455, 558
Hpy99I	CGWCG	3 cut(s)	206, 215, 299
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	7 cut(s)	11, 353, 365, 440, 469, 503, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 350, 515
HpyF3I	CTNAG	2 cut(s)	282, 519
Hsp92II	CATG	2 cut(s)	383, 553
Ksp22I	TGATCA	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	67, 298, 546
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	4 cut(s)	188, 260, 488, 515
Lsp1109I	GCAGC	4 cut(s)	147, 250, 331, 452
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	510
MaeIII	GTNAC	2 cut(s)	89, 303
MalI	GATC	3 cut(s)	69, 300, 548
MboI	GATC	3 cut(s)	67, 298, 546
MboII	GAAGA	2 cut(s)	380, 383
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	2 cut(s)	403, 422
MlyI	GAGTC	2 cut(s)	327, 553
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	5 cut(s)	76, 174, 278, 385, 440
MseI	TTAA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	180, 359
MspR9I	CCNGG	2 cut(s)	72, 398
MvaI	CCWGG	2 cut(s)	72, 398
MwoI	GCNNNNNNNGC	3 cut(s)	166, 350, 515
NdeII	GATC	3 cut(s)	67, 298, 546
NlaIII	CATG	2 cut(s)	383, 553
NlaIV	GGNNCC	4 cut(s)	184, 217, 274, 373
NmuCI	GTSAC	2 cut(s)	89, 303
PciSI	GCTCTTC	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	45, 76
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	162, 265, 346, 442
PleI	GAGTC	2 cut(s)	326, 553
PpsI	GAGTC	2 cut(s)	326, 553
PpuMI	RGGWCCY	2 cut(s)	273, 372
Psp5II	RGGWCCY	2 cut(s)	273, 372
Psp6I	CCWGG	2 cut(s)	70, 396
PspGI	CCWGG	2 cut(s)	70, 396
PspN4I	GGNNCC	4 cut(s)	184, 217, 274, 373
PspPI	GGNCC	3 cut(s)	215, 273, 372
PspPPI	RGGWCCY	2 cut(s)	273, 372
PsuI	RGATCY	1 cut(s)	67
PsyI	GACNNNGTC	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SalI	GTCGAC	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	4 cut(s)	161, 264, 345, 441
Sau3AI	GATC	3 cut(s)	67, 298, 546
Sau96I	GGNCC	3 cut(s)	215, 273, 372
SchI	GAGTC	2 cut(s)	327, 553
ScrFI	CCNGG	2 cut(s)	72, 398
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	2 cut(s)	273, 372
Sse9I	AATT	2 cut(s)	403, 422
SsiI	CCGC	1 cut(s)	219
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	70, 396
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	2 cut(s)	204, 297
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	2 cut(s)	403, 422
TfiI	GAWTC	2 cut(s)	45, 76
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	2 cut(s)	61, 360
TseFI	GTSAC	2 cut(s)	89, 303
TseI	GCWGC	4 cut(s)	160, 263, 344, 440
Tsp45I	GTSAC	2 cut(s)	89, 303
TspDTI	ATGAA	2 cut(s)	163, 277
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	2 cut(s)	61, 360
Tth111I	GACNNNGTC	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	351
VpaK11BI	GGWCC	2 cut(s)	273, 372
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.