Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004349

Physical Location & Seq

Genomic Coordinates Reverse (-)

32173200 .. 32174346

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCTTCGACGTCGTCGGCCCCGCCATCTCCAAGTTTAAAATCGGCGATGCTGTTTGCTCCGTCGCTGCCCTCAGGTCCTTTTCTCAGTTCATCGTCGTCGATCAGTCACTTCTGTGAGTTCTTTGTCATATACACAACATTGATAATTACAATTGAGTGGAATTTGATTGCGGAAATTTTTGGTGTTGGAAGGTTTGGAGTCCTGAAAGGGTGTGGTCTGGTGGCCGCTGGTGCACTACCGGTTGCATTTGGGACCTCTCATGTGGCTCTTCTTCACCAGGCCAATTTCAGCTCTGGTCAAGTATTGCTGGTGCTTGGTGTAGCTAGAGGTGGTGGACTTGTGATGGTGCAGATTGGAAAGGTTGTTGGAGCCGTTGTTATTGCAGTAGCTAGTGCAGTATTTGAAGTCATTGATCATGTGGTGGACTCTAGCAGTCAAAGTATTATCCAAAGTGTGAAGGACTTTTTGAAAACCAGAAAGCTTAAAGGTGTTGATGTTTTGTATGATTCGATTGGAGGGAAGCTTACTAAAGAAATTTTGGTTATAGGTTTTGCGAGTGGAGAGCTCTCTGTCATTTCCGCCAATATTGCTCTTCTTGGTCTTGTTTTTGGAGAAGAAAGAGAAGAGAAGAGTAAGAGTTGTCATGGTTTTGGAGAAAAAAGAGGGAGAGAGAAGACCAAATCTGACTTTGAGGGTATTTTAGGAAGTGCAAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

240

Amino Acids

25.1

Weight (kDa)

8.76

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56460
fragaria_vesca	FvH4_7g26290 FvH4_7g26290 FvH4_7g26290 FvH4_7g26290
malus_domestica	MD00G1044900.v1.1 MD07G1238300.v1.1 MD11G1140100.v1.1
pyrus_communis	pycom07g21430
rosa_chinensis	RchiOBHm_Chr1g0372751 RchiOBHm_Chr5g0036601
rosa_laevigata	RLG00000026875
rosa_multiflora	Rmu_sc0003277.1_g000001 Rmu_sc0003804.1_g000038 Rmu_sc0008708.1_g000010 Rmu_sc0009717.1_g000007
rosa_roxburghii	Rroxscaffold_4G00284710
rosa_rugosa	Rorug01G0374100 Rorug02G0272800 Rorug04G0441100
rosa_samantha	Rh1AG382800 Rh1BG346300 Rh1CG359600 Rh1DG377400 Rh2AG155100 Rh2DG160700 Rh5BG251000 Rh5DG126800 Rh5DG259000
rosa_wichuraiana	Rw1G033690 Rw2G012370 Rw5G022950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
AciI	CCGC	4 cut(s)	23, 173, 228, 582
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	3 cut(s)	163, 177, 537
AcyI	GRCGYC	1 cut(s)	11
AgeI	ACCGGT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	407, 472
AjnI	CCWGG	1 cut(s)	279
AleI	CACNNNNGTG	1 cut(s)	114
AluBI	AGCT	6 cut(s)	294, 326, 392, 484, 526, 568
AluI	AGCT	6 cut(s)	294, 326, 392, 484, 526, 568
Alw21I	GWGCWC	2 cut(s)	238, 570
Alw44I	GTGCAC	1 cut(s)	234
AoxI	GGCC	3 cut(s)	18, 225, 282
ApaLI	GTGCAC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	3 cut(s)	163, 177, 537
AsiGI	ACCGGT	1 cut(s)	241
AspS9I	GGNCC	3 cut(s)	19, 77, 255
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	77, 255
AxyI	CCTNAGG	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	683
Bbv12I	GWGCWC	2 cut(s)	238, 570
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	2 cut(s)	34, 340
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	281
BclI	TGATCA	1 cut(s)	415
BfaI	CTAG	3 cut(s)	327, 393, 432
BisI	GCNGC	2 cut(s)	68, 228
BlsI	GCNGC	2 cut(s)	69, 229
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	2 cut(s)	77, 255
BmgT120I	GGNCC	3 cut(s)	19, 77, 255
BmiI	GGNNCC	3 cut(s)	21, 256, 373
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	683
BsaHI	GRCGYC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bse118I	RCCGGY	1 cut(s)	241
Bse21I	CCTNAGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	281
BseMII	CTCAG	2 cut(s)	87, 100
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	54
BsgI	GTGCAG	2 cut(s)	371, 417
BshFI	GGCC	3 cut(s)	20, 227, 284
BshTI	ACCGGT	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	238, 570
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	3 cut(s)	20, 227, 284
Bsp1286I	GDGCHC	2 cut(s)	238, 570
Bsp143I	GATC	2 cut(s)	102, 415
BspACI	CCGC	4 cut(s)	23, 173, 228, 582
BspANI	GGCC	3 cut(s)	20, 227, 284
BspCNI	CTCAG	2 cut(s)	86, 99
BspLI	GGNNCC	3 cut(s)	21, 256, 373
BspQI	GCTCTTC	2 cut(s)	276, 600
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssMI	GATC	2 cut(s)	102, 415
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	281
Bst6I	CTCTTC	4 cut(s)	276, 600, 621, 626
BstACI	GRCGYC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	73, 86
BstKTI	GATC	2 cut(s)	105, 418
BstMBI	GATC	2 cut(s)	102, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 590
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	683
Bsu36I	CCTNAGG	1 cut(s)	73
BsuRI	GGCC	3 cut(s)	20, 227, 284
BtgZI	GCGATG	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	3 cut(s)	19, 77, 255
CspAI	ACCGGT	1 cut(s)	241
CviAII	CATG	3 cut(s)	263, 419, 647
DdeI	CTNAG	2 cut(s)	73, 86
DpnI	GATC	2 cut(s)	104, 417
DpnII	GATC	2 cut(s)	102, 415
DraI	TTTAAA	1 cut(s)	39
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	4 cut(s)	276, 600, 621, 626
EarI	CTCTTC	4 cut(s)	276, 600, 621, 626
EciI	GGCGGA	1 cut(s)	571
Ecl136II	GAGCTC	1 cut(s)	568
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	2 cut(s)	77, 255
Eco53kI	GAGCTC	1 cut(s)	568
Eco81I	CCTNAGG	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	568
EcoO109I	RGGNCCY	2 cut(s)	77, 255
EcoRII	CCWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	570
FaeI	CATG	3 cut(s)	266, 422, 650
FaiI	YATR	7 cut(s)	131, 133, 264, 420, 507, 548, 648
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	3 cut(s)	262, 418, 646
FauI	CCCGC	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	68, 228
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	2 cut(s)	68, 228
FspBI	CTAG	3 cut(s)	327, 393, 432
GluI	GCNGC	2 cut(s)	68, 228
HaeIII	GGCC	3 cut(s)	20, 227, 284
HapII	CCGG	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	3 cut(s)	266, 422, 650
HindIII	AAGCTT	2 cut(s)	482, 524
HinfI	GANTC	3 cut(s)	201, 428, 509
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	3 cut(s)	236, 338, 427
Hpy188I	TCNGA	1 cut(s)	688
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	3 cut(s)	236, 338, 427
Hpy99I	CGWCG	6 cut(s)	13, 16, 19, 67, 100, 103
HpyAV	CCTTC	2 cut(s)	186, 454
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	6 cut(s)	236, 248, 352, 386, 398, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 590
HpyF3I	CTNAG	2 cut(s)	73, 86
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	266, 422, 650
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	102, 415
LguI	GCTCTTC	2 cut(s)	276, 600
LmnI	GCTCC	2 cut(s)	64, 371
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	3 cut(s)	327, 393, 432
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	2 cut(s)	104, 417
MboI	GATC	2 cut(s)	102, 415
MboII	GAAGA	7 cut(s)	263, 266, 587, 629, 638, 643, 688
MfeI	CAATTG	1 cut(s)	153
MhlI	GDGCHC	2 cut(s)	238, 570
MluCI	AATT	6 cut(s)	147, 153, 163, 177, 286, 537
MlyI	GAGTC	2 cut(s)	210, 422
MmeI	TCCRAC	2 cut(s)	169, 349
MnlI	CCTC	6 cut(s)	82, 268, 323, 512, 659, 688
MseI	TTAA	2 cut(s)	38, 486
MslI	CAYNNNNRTG	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	233, 590
NdeII	GATC	2 cut(s)	102, 415
NlaIII	CATG	3 cut(s)	266, 422, 650
NlaIV	GGNNCC	3 cut(s)	21, 256, 373
NmuCI	GTSAC	1 cut(s)	107
OliI	CACNNNNGTG	1 cut(s)	114
PciSI	GCTCTTC	2 cut(s)	276, 600
PfeI	GAWTC	1 cut(s)	509
PflFI	GACNNNGTC	1 cut(s)	13
PinAI	ACCGGT	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	69, 229
PleI	GAGTC	2 cut(s)	209, 422
PpsI	GAGTC	2 cut(s)	209, 422
PpuMI	RGGWCCY	2 cut(s)	77, 255
Psp124BI	GAGCTC	1 cut(s)	570
Psp5II	RGGWCCY	2 cut(s)	77, 255
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	21, 256, 373
PspPI	GGNCC	3 cut(s)	19, 77, 255
PspPPI	RGGWCCY	2 cut(s)	77, 255
PsyI	GACNNNGTC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	570
SapI	GCTCTTC	2 cut(s)	276, 600
SaqAI	TTAA	2 cut(s)	38, 486
SatI	GCNGC	2 cut(s)	68, 228
Sau3AI	GATC	2 cut(s)	102, 415
Sau96I	GGNCC	3 cut(s)	19, 77, 255
SchI	GAGTC	2 cut(s)	210, 422
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	238, 570
SfaNI	GCATC	1 cut(s)	39
SinI	GGWCC	2 cut(s)	77, 255
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	6 cut(s)	147, 153, 163, 177, 286, 537
SsiI	CCGC	4 cut(s)	23, 173, 228, 582
SspI	AATATT	1 cut(s)	589
SspMI	CTAG	3 cut(s)	327, 393, 432
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	279
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	3 cut(s)	8, 101, 512
TasI	AATT	6 cut(s)	147, 153, 163, 177, 286, 537
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	2 cut(s)	38, 486
Tru9I	TTAA	2 cut(s)	38, 486
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	81
TspGWI	ACGGA	1 cut(s)	51
Tth111I	GACNNNGTC	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	234
VpaK11BI	GGWCC	2 cut(s)	77, 255
XapI	RAATTY	3 cut(s)	163, 177, 537
XspI	CTAG	3 cut(s)	327, 393, 432
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.